ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (... 30 1.5
2CFI_VITVI (P51117) Chalcone--flavonone isomerase (EC 5.5.1.6) (C... 30 1.5
3SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar... 29 3.3
4VMSA_HBVDR (P03140) Major surface antigen precursor 28 4.3
5GLNA_CLOSA (P10656) Glutamine synthetase (EC 6.3.1.2) (Glutamate... 28 4.3
6VMSA_HBVDN (P30019) Major surface antigen 28 4.3
7CFI_ELAUM (O65333) Chalcone--flavonone isomerase (EC 5.5.1.6) (C... 28 5.6
8M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kina... 28 5.6
9ABL1_MOUSE (P00520) Proto-oncogene tyrosine-protein kinase ABL1 ... 28 7.3
10GRPE_THEVO (Q97BG7) Protein grpE (HSP-70 cofactor) 27 9.5
11VMSA_HPBGS (P03144) Major surface antigen precursor 27 9.5
12H1_LYCES (P37218) Histone H1 27 9.5
13VMSA_HBVAR (P31869) Major surface antigen 27 9.5
14ANFB_CANFA (P16859) Natriuretic peptides B precursor [Contains: ... 27 9.5

>DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 360

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -3

Query: 349 FPEYPIPTRCKDEVNPPKKGYKYTNQPLKDLGMKFTPVQEYLY-EAVNSLQEKGFI 185
           +PEY +PT+ KD         +++++ L DLG +F    + +Y  AV S + KG +
Sbjct: 287 YPEYNVPTKFKD-YKEDMGQVQFSSKKLTDLGFEFKYGLKDMYTAAVESCRAKGLL 341



to top

>CFI_VITVI (P51117) Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone|
           isomerase)
          Length = 234

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 319 KDEVNPPKKGYKYTNQPLKDLGMKFTPVQEYLYEAVNSLQEKGFIKKASGTKVLASRGGS 140
           KDE  PP     +T+ PL  L M F+     L E  N++ E   + +A    ++   G S
Sbjct: 142 KDETFPPGNSILFTHSPLGALTMSFSK-DGSLPEVGNAVIENKLLTEAVLESIIGKHGVS 200

Query: 139 PPQNSPAPMFMSKL 98
           P         +S+L
Sbjct: 201 PEAKKSLAARLSEL 214



to top

>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 98  KFRHKHGRR*ILRRRTPSTSKHLGARS 178
           K RH   R    RRRTPS+S+H  +RS
Sbjct: 245 KRRHSRSRSRSRRRRTPSSSRHRRSRS 271



to top

>VMSA_HBVDR (P03140) Major surface antigen precursor|
          Length = 399

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
 Frame = +1

Query: 193 PFLAGNSQLHRG------IPAQG*TS----CLGP*EAGSCTCNPSLADSPRPCILWEWGT 342
           P L G S    G      IPAQG +     C      G+CTC P  +       LWEW +
Sbjct: 281 PLLPGTSTTSTGPCKTCTIPAQGTSMFPSCCCTKPSDGNCTCIPIPSSWAFARFLWEWAS 340



to top

>GLNA_CLOSA (P10656) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase)
          Length = 443

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 319 KDEVNPPKKG----YKYTNQPLKDLGMKFTPVQEYLYEAVNSLQEKGFIKKASGTKV 161
           K+ + PP +     +  T Q  K+ G+   P    LYEAVN ++E    KKA G  V
Sbjct: 358 KNNLQPPAEVEANIFAMTEQERKENGIDNLP--NNLYEAVNYMKENELAKKALGDHV 412



to top

>VMSA_HBVDN (P30019) Major surface antigen|
          Length = 226

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
 Frame = +1

Query: 193 PFLAGNSQLHRG------IPAQG*TS----CLGP*EAGSCTCNPSLADSPRPCILWEWGT 342
           P L G S    G      IPAQG +     C      G+CTC P  +       LWEW +
Sbjct: 108 PLLPGTSTTSTGPCKTCTIPAQGTSMFPSCCCTKPSDGNCTCIPIPSSWAFARFLWEWAS 167



to top

>CFI_ELAUM (O65333) Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone|
           isomerase)
          Length = 256

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = -3

Query: 319 KDEVNPPKKGYKYTNQPLKDLGMKFTPVQEYLYEAVNSLQEKGFIKKASGTKVLASRGGS 140
           KD+  PP     +T  PL  L M F+     + E  N++ E   + +A    ++   G S
Sbjct: 143 KDQTFPPAASNLFTQSPLGSLTMSFSK-DGSIPEVGNAVLENKLLSEAVLESIIGKHGVS 201

Query: 139 P 137
           P
Sbjct: 202 P 202



to top

>M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kinase 4 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4)
           (MEKK 4)
          Length = 1597

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = -3

Query: 319 KDEVNPPKKGYKYTNQPLKDLGMKFTPVQEYLYEAVNSLQ------EKGFIKKASGTKVL 158
           K+++N P +       P KDLG     V+EY Y+    ++      E+   K A  + +L
Sbjct: 107 KEKMNTPSQS------PHKDLGKGVETVEEYSYKQEKKIRATLRTTERDHKKNAQCSFML 160

Query: 157 ASRGGSPPQNSPAPMFMSK 101
            S  GS P+ S   + ++K
Sbjct: 161 DSVAGSLPKKSIPDVDLNK 179



to top

>ABL1_MOUSE (P00520) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)|
            (p150) (c-ABL) (Abelson murine leukemia viral oncogene
            homolog 1)
          Length = 1123

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = -3

Query: 337  PIPTRCKDEVNPPKKGYKYTNQPLKDLGMKFTPVQEYLYEAVNSLQEKGFIKKASGTKVL 158
            P P   K      ++G+K T           TP  + L   V +    G   K   TK  
Sbjct: 781  PPPRLVKKNEEAAEEGFKDTESSPGSSPPSLTP--KLLRRQVTASPSSGLSHKEEATKGS 838

Query: 157  ASRGGSPPQNSPAPMFMSKL**ASAQSNN-AVRRH 56
            AS  G+P    PAP   +K+  + A S    VRRH
Sbjct: 839  ASGMGTPATAEPAPP-SNKVGLSKASSEEMRVRRH 872



to top

>GRPE_THEVO (Q97BG7) Protein grpE (HSP-70 cofactor)|
          Length = 176

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 286 KYTNQPLKDLGMKFTPVQEYLYEAVNSLQ--EKGFIK 182
           KY  QP+K  G KF P   YL+EA+   Q  E G IK
Sbjct: 119 KYGLQPIKAEGEKFDP---YLHEAIGMTQDGEDGKIK 152



to top

>VMSA_HPBGS (P03144) Major surface antigen precursor|
          Length = 428

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 CLGP*EAGSCTCNPSLADSPRPCILWEW 336
           CL P  AG+CTC P  +       LWEW
Sbjct: 341 CLKP-TAGNCTCWPIPSSWALGSYLWEW 367



to top

>H1_LYCES (P37218) Histone H1|
          Length = 287

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
 Frame = -3

Query: 343 EYPIPTRCKDEVNPPKKGYK-----YTNQPLKDLGMKFTPVQ----EYLYEAVNSLQEKG 191
           E   P   KDE NPP K  K        +P        TP      E + +A+ +L+E+ 
Sbjct: 15  EQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERT 74

Query: 190 FIKKASGTKVLASRGGSPPQN 128
              + + TK +  +  S P N
Sbjct: 75  GSSQHAITKFIEEKQKSLPSN 95



to top

>VMSA_HBVAR (P31869) Major surface antigen|
          Length = 226

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
 Frame = +1

Query: 193 PFLAGNSQLHRG------IPAQG*TS-----CLGP*EAGSCTCNPSLADSPRPCILWEWG 339
           P L G S    G      IPAQG +      C  P +A +CTC P  +       LWEW 
Sbjct: 108 PLLPGTSTTSTGPCKTCTIPAQGTSMFPSCCCTKPSDA-NCTCIPIPSSWAFARFLWEWA 166

Query: 340 T 342
           +
Sbjct: 167 S 167



to top

>ANFB_CANFA (P16859) Natriuretic peptides B precursor [Contains: Gamma-brain|
           natriuretic peptide; Brain natriuretic peptide 34
           (BNP-34); Brain natriuretic peptide 29 (BNP-29)]
          Length = 140

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -1

Query: 192 GSLRRLLAPRCLLVEGVRRLR----IHRRPCLCRNFDRL 88
           G+ R +LAP   +++ +RRLR    +H+  C  R  DR+
Sbjct: 88  GTPRGVLAPHDSVLQALRRLRSPKMMHKSGCFGRRLDRI 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,471,476
Number of Sequences: 219361
Number of extensions: 1107955
Number of successful extensions: 2468
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2468
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top