ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49b07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464328.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1335 Score = 129 bits (65), Expect = 7e-27 Identities = 146/173 (84%) Strand = Plus / Minus Query: 179 cttcttaatgaaccccttttcttgcagggaattcacagcttcatagaggtattcctgcac 238 |||||| ||||| || || |||| |||||| ||||| |||||||| |||||||| ||||| Sbjct: 1053 cttcttgatgaatcctttgtcttccagggacttcactgcttcatacaggtattcatgcac 994 Query: 239 aggggtgaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctt 298 ||| |||||||| |||||||| ||||| ||||| ||||| ||| ||||||| |||||||| Sbjct: 993 aggtgtgaacttgatgcctagatccttcagaggttggtttgtgaacttgtagcccttctt 934 Query: 299 tggcggattcacctcgtccttgcatcttgtgggaatggggtactccgggaaga 351 ||| ||||| | ||| ||| |||| ||||| || || || ||||||||||||| Sbjct: 933 tggtggatttatctcatccctgcaccttgtagggatcggatactccgggaaga 881
>dbj|AK070746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M01, full insert sequence Length = 1335 Score = 129 bits (65), Expect = 7e-27 Identities = 146/173 (84%) Strand = Plus / Minus Query: 179 cttcttaatgaaccccttttcttgcagggaattcacagcttcatagaggtattcctgcac 238 |||||| ||||| || || |||| |||||| ||||| |||||||| |||||||| ||||| Sbjct: 1053 cttcttgatgaatcctttgtcttccagggacttcactgcttcatacaggtattcatgcac 994 Query: 239 aggggtgaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctt 298 ||| |||||||| |||||||| ||||| ||||| ||||| ||| ||||||| |||||||| Sbjct: 993 aggtgtgaacttgatgcctagatccttcagaggttggtttgtgaacttgtagcccttctt 934 Query: 299 tggcggattcacctcgtccttgcatcttgtgggaatggggtactccgggaaga 351 ||| ||||| | ||| ||| |||| ||||| || || || ||||||||||||| Sbjct: 933 tggtggatttatctcatccctgcaccttgtagggatcggatactccgggaaga 881
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 4e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 179 cttcttaatgaaccccttttcttgcagggaattcacagcttcatagaggtattcctgcac 238 |||||| ||||| || || |||| |||||| ||||| |||||||| |||||||| ||||| Sbjct: 4499595 cttcttgatgaatcctttgtcttccagggacttcactgcttcatacaggtattcatgcac 4499536 Query: 239 aggggtgaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctt 298 ||| |||||||| |||||||| ||||| ||||| ||||| ||| ||||||| |||||||| Sbjct: 4499535 aggtgtgaacttgatgcctagatccttcagaggttggtttgtgaacttgtagcccttctt 4499476 Query: 299 tggcggatt 307 ||| ||||| Sbjct: 4499475 tggtggatt 4499467
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 113 bits (57), Expect = 4e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 179 cttcttaatgaaccccttttcttgcagggaattcacagcttcatagaggtattcctgcac 238 |||||| ||||| || || |||| |||||| ||||| |||||||| |||||||| ||||| Sbjct: 34974 cttcttgatgaatcctttgtcttccagggacttcactgcttcatacaggtattcatgcac 34915 Query: 239 aggggtgaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctt 298 ||| |||||||| |||||||| ||||| ||||| ||||| ||| ||||||| |||||||| Sbjct: 34914 aggtgtgaacttgatgcctagatccttcagaggttggtttgtgaacttgtagcccttctt 34855 Query: 299 tggcggatt 307 ||| ||||| Sbjct: 34854 tggtggatt 34846
>gb|AY771357.1| Triticum aestivum cultivar H4564 cinnamoyl-CoA reductase mRNA, complete cds Length = 1489 Score = 42.1 bits (21), Expect = 1.2 Identities = 84/105 (80%) Strand = Plus / Minus Query: 245 gaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctttggcgg 304 ||||| ||| || ||||||||||| |||||||||| | ||||| || ||| || || Sbjct: 1087 gaactccatccccaggtccttgagcctctggttcgtgaatttgtaccctttcaccggtgg 1028 Query: 305 attcacctcgtccttgcatcttgtgggaatggggtactccgggaa 349 ||||||||||||||||| | ||||| | ||||||||| ||||| Sbjct: 1027 gttcacctcgtccttgcacttggtgggtacggggtactcggggaa 983
>gb|AY008295.1| Triticum aestivum cinnamoyl-CoA reductase mRNA, partial cds Length = 498 Score = 42.1 bits (21), Expect = 1.2 Identities = 84/105 (80%) Strand = Plus / Minus Query: 245 gaacttcatgcctaggtccttgagaggctggttcgtgtacttgtaacccttctttggcgg 304 ||||| ||| || ||||||||||| |||||||||| | ||||| || ||| || || Sbjct: 438 gaactccatccccaggtccttgagcctctggttcgtgaatttgtaccctttcaccggtgg 379 Query: 305 attcacctcgtccttgcatcttgtgggaatggggtactccgggaa 349 ||||||||||||||||| | ||||| | ||||||||| ||||| Sbjct: 378 gttcacctcgtccttgcacttggtgggtacggggtactcagggaa 334
>gb|AC155347.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH093K03, complete sequence Length = 78322 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 ttaatcaaatgaattacaatt 52 ||||||||||||||||||||| Sbjct: 67017 ttaatcaaatgaattacaatt 67037
>ref|XM_425648.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 2310067E08 (LOC428090), mRNA Length = 3183 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccttttcttgcagggaattc 212 |||||||||||||||||||| Sbjct: 336 ccttttcttgcagggaattc 317
>gb|DQ001168.1| Acacia mangium x Acacia auriculiformis cinnamoyl-CoA reductase mRNA, complete cds Length = 1305 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggggtgaacttcatgcctag 259 |||||||||||||||||||| Sbjct: 987 ggggtgaacttcatgcctag 968
>gb|AC090958.3| Homo sapiens chromosome 3 clone RP11-758G22 map 3p, complete sequence Length = 193333 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccttttcttgcagggaattc 212 |||||||||||||||||||| Sbjct: 141120 ccttttcttgcagggaattc 141101 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,425,702 Number of Sequences: 3902068 Number of extensions: 2425702 Number of successful extensions: 36546 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36513 Number of HSP's gapped (non-prelim): 33 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
