ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, comple... 44 0.18
2gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 42 0.72
3gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B0702... 42 0.72
4gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B5701... 42 0.72
5gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/... 42 0.72
6gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B1501... 42 0.72
7gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 42 0.72
8gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/... 42 0.72
9gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B0801... 42 0.72
10gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 42 0.72
11gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B0801... 42 0.72
12emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chr... 42 0.72
13emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chro... 42 0.72
14emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on c... 42 0.72
15emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chro... 42 0.72
16emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chr... 42 0.72
17emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chro... 42 0.72
18emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chro... 42 0.72
19dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 gen... 42 0.72
20ref|XM_397369.2| PREDICTED: Apis mellifera similar to MGC80272 p... 42 0.72
21dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 0.72
22gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21... 42 0.72
23gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21... 42 0.72
24dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes 42 0.72
25dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 42 0.72
26gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, comple... 40 2.8
27gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete se... 40 2.8
28emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 i... 40 2.8
29emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on ch... 40 2.8
30gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, compl... 40 2.8
31emb|AL133259.24| Human DNA sequence from clone RP1-258E1 on chro... 40 2.8
32gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 2.8
33gb|AC079054.6| Homo sapiens chromosome 8, clone RP11-158A14, com... 40 2.8
34gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, r... 40 2.8
35gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 40 2.8
36gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 40 2.8
37emb|AL512348.8| Human DNA sequence from clone RP11-361M3 on chro... 40 2.8
38gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15... 40 2.8
39gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 2.8 
>gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, complete sequence
          Length = 170202

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 132    gctaattatagtactcattcat 153
              ||||||||||||||||||||||
Sbjct: 145581 gctaattatagtactcattcat 145602
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>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
              sequence
          Length = 346809

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 249880 catgcccactgccacctccgc 249900
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>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103
              genomic sequence
          Length = 341361

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 252935 catgcccactgccacctccgc 252955
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>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
              sequence
          Length = 265420

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 253041 catgcccactgccacctccgc 253061
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>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 338517

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 249248 catgcccactgccacctccgc 249268
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>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401
              genomic sequence
          Length = 351341

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 264873 catgcccactgccacctccgc 264893
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>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 264651 catgcccactgccacctccgc 264671
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>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 328871

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 250232 catgcccactgccacctccgc 250252
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>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 338544

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 260938 catgcccactgccacctccgc 260958
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>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 243750 catgcccactgccacctccgc 243770
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>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 342745

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 241548 catgcccactgccacctccgc 241568
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>emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chromosome 6, complete
            sequence
          Length = 10602

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  catgcccactgccacctccgc 133
            |||||||||||||||||||||
Sbjct: 1311 catgcccactgccacctccgc 1291
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>emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chromosome 6 Contains the
             C6orf15 gene for chromosome 6 open reading frame 15, the
             CDSN gene for corneodesmosin, the PSORS1C1 gene for
             psoriasis susceptibility 1 candidate 1, the PSORS1C2 gene
             for psoriasis susceptibility 1 candidate 2, the POLR2LP
             pseudogene for polymerase (RNA) II (DNA directed)
             polypeptide L, the C6orf18 gene for chromosome 6 open
             reading frame 18, the TCF19 gene for transcription factor
             19 (SC1), the POU5F1 gene for POU domain, class 5,
             transcription factor 1, the PSORS1C3 gene for psoriasis
             susceptibility 1 candidate 3, and 1 CpG island, complete
             sequence
          Length = 113388

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 47901 catgcccactgccacctccgc 47881
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>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the
             gene for STG protein, the CDSN gene for corneodesmosin,
             the gene for SEEK1 protein, the gene for SPR1 protein, the
             gene for HCR, the TCF19 gene for transcription factor 19,
             the POU5F1 gene for POU domain, class 5, transcription
             factor 1, a putative novel transcript and four CpG
             islands, complete sequence
          Length = 204298

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 65576 catgcccactgccacctccgc 65556
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>emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chromosome 6 contains the
             genes for STG protein, SEEK1 protein, SPR1 protein and the
             CDSN gene for corneodesmosin, complete sequence
          Length = 70288

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 55489 catgcccactgccacctccgc 55469
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>emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chromosome 6, complete
            sequence
          Length = 6810

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 113  catgcccactgccacctccgc 133
            |||||||||||||||||||||
Sbjct: 6182 catgcccactgccacctccgc 6162
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>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete
              sequence
          Length = 135396

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 117610 catgcccactgccacctccgc 117590
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>emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chromosome 6, complete
             sequence
          Length = 81418

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 47354 catgcccactgccacctccgc 47334
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>dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 genes for chromosome 6
             open reading frame 15, chromosome 6 open reading frame 16,
             corneodesmosin, chromosome 6 open reading frame 17,
             complete cds
          Length = 30921

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 16179 catgcccactgccacctccgc 16159
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>ref|XM_397369.2| PREDICTED: Apis mellifera similar to MGC80272 protein (LOC413930),
            mRNA
          Length = 1956

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 75   aattggaacattatattgttc 95
            |||||||||||||||||||||
Sbjct: 1620 aattggaacattatattgttc 1640
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    catgcccactgccacctccgc 133
              |||||||||||||||||||||
Sbjct: 816010 catgcccactgccacctccgc 816030
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>gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21, complete sequence
          Length = 40878

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 39326 catgcccactgccacctccgc 39346
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>gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21, complete sequence
          Length = 44379

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  catgcccactgccacctccgc 133
            |||||||||||||||||||||
Sbjct: 1443 catgcccactgccacctccgc 1463
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>dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes
          Length = 30911

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 16177 catgcccactgccacctccgc 16157
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>dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:TY1C2, complete sequence
          Length = 39196

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 113   catgcccactgccacctccgc 133
             |||||||||||||||||||||
Sbjct: 22875 catgcccactgccacctccgc 22895
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>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence
          Length = 204795

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 115   tgcccactgccacctccgctaatt 138
             |||||||||||||||| |||||||
Sbjct: 45179 tgcccactgccacctctgctaatt 45156
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>gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete sequence
          Length = 127820

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      gcacaagaaccagcttttat 21
              ||||||||||||||||||||
Sbjct: 103274 gcacaagaaccagcttttat 103293
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>emb|CR533578.7| Zebrafish DNA sequence from clone CH211-216F21 in linkage group 16,
              complete sequence
          Length = 214872

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     acattatattgttcaggaaa 101
              ||||||||||||||||||||
Sbjct: 214586 acattatattgttcaggaaa 214567
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>emb|AL359075.15| Human DNA sequence from clone RP11-568K15 on chromosome 1 Contains the
             5' end of a gene for regucalcin gene promotor region
             related protein (RGPR), DKFZp686C2486, complete sequence
          Length = 119859

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aagaaccagcttttatttca 25
             ||||||||||||||||||||
Sbjct: 44611 aagaaccagcttttatttca 44630
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>gb|AC129292.4| Mus musculus chromosome 5 clone RP24-507A8, complete sequence
          Length = 186200

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    tgcccactgccacctccgctaatt 138
              |||||||||||||||| |||||||
Sbjct: 120072 tgcccactgccacctctgctaatt 120049
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>emb|AL133259.24| Human DNA sequence from clone RP1-258E1 on chromosome 6 Contains the 3'
             end of the CD83 gene for CD83 antigen (activated B
             lymphocytes, immunoglobulin superfamily), complete
             sequence
          Length = 72979

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tccccatgcccactgccacc 128
             ||||||||||||||||||||
Sbjct: 26783 tccccatgcccactgccacc 26764
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tgcccactgccacctccgct 134
              ||||||||||||||||||||
Sbjct: 821009 tgcccactgccacctccgct 821028
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>gb|AC079054.6| Homo sapiens chromosome 8, clone RP11-158A14, complete sequence
          Length = 175834

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagaaccagcttttatttca 25
             ||||||||||||||||||||
Sbjct: 10092 aagaaccagcttttatttca 10073
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>gb|AC008093.4|AC008093 Drosophila melanogaster, chromosome 3R, region 84F-84F, BAC clone
             BACR07M14, complete sequence
          Length = 181950

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttttatttcaatcgaaaata 35
             ||||||||||||||||||||
Sbjct: 62481 ttttatttcaatcgaaaata 62462
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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160095

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      aagaaccagcttttatttca 25
              ||||||||||||||||||||
Sbjct: 156374 aagaaccagcttttatttca 156393
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>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 199945

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    tttatttcaatcgaaaataggaaa 40
             ||||||||||| ||||||||||||
Sbjct: 38200 tttatttcaatggaaaataggaaa 38223
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>emb|AL512348.8| Human DNA sequence from clone RP11-361M3 on chromosome 1, complete
             sequence
          Length = 173447

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aagaaccagcttttatttca 25
             ||||||||||||||||||||
Sbjct: 65845 aagaaccagcttttatttca 65826
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>gb|AE003677.3| Drosophila melanogaster chromosome 3R, section 15 of 118 of the
             complete sequence
          Length = 228314

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttttatttcaatcgaaaata 35
             ||||||||||||||||||||
Sbjct: 40876 ttttatttcaatcgaaaata 40857
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 93      ttcaggaaatgcttcctccc 112
               ||||||||||||||||||||
Sbjct: 1763465 ttcaggaaatgcttcctccc 1763446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,327,036
Number of Sequences: 3902068
Number of extensions: 2327036
Number of successful extensions: 177605
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177443
Number of HSP's gapped (non-prelim): 162
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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