ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104416.7| Homo sapiens chromosome 8, clone CTD-3015P10, com... 42 1.7
2gb|AC018612.7| Homo sapiens chromosome 8, clone RP11-34K13, comp... 42 1.7
3gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, comp... 42 1.7
4gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, compl... 42 1.7
5gb|AC008033.9| Homo sapiens 12 BAC RP11-81H14 (Roswell Park Canc... 42 1.7
6gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049... 42 1.7
7emb|Z75953.1|CEF57F5 Caenorhabditis elegans Cosmid F57F5, comple... 42 1.7
8gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome... 40 6.6
9gb|AC157570.5| Mus musculus BAC clone RP23-105H5 from chromosome... 40 6.6
10gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosom... 40 6.6
11gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete... 40 6.6
12gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, com... 40 6.6
13ref|XM_992597.1| PREDICTED: Mus musculus heat shock transcriptio... 40 6.6
14ref|XM_904809.2| PREDICTED: Mus musculus heat shock transcriptio... 40 6.6
15ref|XM_484622.3| PREDICTED: Mus musculus heat shock transcriptio... 40 6.6
16gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome... 40 6.6
17ref|XM_548023.2| PREDICTED: Canis familiaris similar to guanine ... 40 6.6
18gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, c... 40 6.6
19gb|AC006320.4| Homo sapiens PAC clone RP5-839O24 from 7, complet... 40 6.6
20gb|AC103363.6| Mus musculus chromosome 17, clone RP24-247H9, com... 40 6.6
21emb|BX640931.1|HSM807077 Homo sapiens genomic DNA; cDNA DKFZp686... 40 6.6
22gb|AC108210.4| Homo sapiens BAC clone RP11-457P14 from 4, comple... 40 6.6
23dbj|AK016553.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.6
24gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, r... 40 6.6
25gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromoso... 40 6.6
26gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosom... 40 6.6
27gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Can... 40 6.6
28emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chro... 40 6.6
29emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on ch... 40 6.6
30dbj|AK106143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
31dbj|AK104374.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
32dbj|AK101500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
33dbj|AK071579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
34dbj|AK069680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
35gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53... 40 6.6
36dbj|AP000767.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.6
37emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chr... 40 6.6
38emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chr... 40 6.6
39gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (B... 40 6.6
40gb|AC161414.3| Mus musculus chromosome 1, clone CH36-500J15, com... 40 6.6
41gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-... 40 6.6
42emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on ch... 40 6.6 
>gb|AC104416.7| Homo sapiens chromosome 8, clone CTD-3015P10, complete sequence
          Length = 172029

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    acatacatacacacattccca 133
              |||||||||||||||||||||
Sbjct: 157048 acatacatacacacattccca 157028
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>gb|AC018612.7| Homo sapiens chromosome 8, clone RP11-34K13, complete sequence
          Length = 178525

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   acatacatacacacattccca 133
             |||||||||||||||||||||
Sbjct: 85038 acatacatacacacattccca 85018
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>gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, complete sequence
          Length = 180339

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    aaacactttccttattcaaca 175
              |||||||||||||||||||||
Sbjct: 177045 aaacactttccttattcaaca 177065
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>gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, complete sequence
          Length = 141513

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     ttttattacttggcacatgta 32
              |||||||||||||||||||||
Sbjct: 125776 ttttattacttggcacatgta 125756
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>gb|AC008033.9| Homo sapiens 12 BAC RP11-81H14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 149136

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   cacaaggcaatgagccaactt 235
             |||||||||||||||||||||
Sbjct: 92865 cacaaggcaatgagccaactt 92885
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>gb|AC005780.1|AC005780 Homo sapiens chromosome 19, cosmid F23049, complete sequence
          Length = 42393

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   ttttattacttggcacatgta 32
            |||||||||||||||||||||
Sbjct: 3409 ttttattacttggcacatgta 3389
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>emb|Z75953.1|CEF57F5 Caenorhabditis elegans Cosmid F57F5, complete sequence
          Length = 25842

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   aaacactttccttattcaaca 175
             |||||||||||||||||||||
Sbjct: 22684 aaacactttccttattcaaca 22664
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>gb|AC163358.3| Mus musculus BAC clone RP23-11M14 from chromosome 14, complete sequence
          Length = 208634

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tgcaatcgccttcagttcct 271
             ||||||||||||||||||||
Sbjct: 49233 tgcaatcgccttcagttcct 49214
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>gb|AC157570.5| Mus musculus BAC clone RP23-105H5 from chromosome 12, complete sequence
          Length = 227238

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    atacatacacacattcccac 134
              ||||||||||||||||||||
Sbjct: 194762 atacatacacacattcccac 194781
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>gb|AC161050.2| Mus musculus BAC clone RP23-477C12 from chromosome 12, complete
             sequence
          Length = 197084

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   taacaagacatacatacacacatt 129
             |||||| |||||||||||||||||
Sbjct: 64582 taacaatacatacatacacacatt 64559
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>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence
          Length = 163116

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   caagacatacatacacacat 128
             ||||||||||||||||||||
Sbjct: 50841 caagacatacatacacacat 50822
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>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence
          Length = 227648

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    atacatacacacattcccac 134
              ||||||||||||||||||||
Sbjct: 205178 atacatacacacattcccac 205159
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>ref|XM_992597.1| PREDICTED: Mus musculus heat shock transcription factor 2 binding
            protein (Hsf2bp), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  aggaaaacactttccttatt 170
            ||||||||||||||||||||
Sbjct: 1604 aggaaaacactttccttatt 1623
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>ref|XM_904809.2| PREDICTED: Mus musculus heat shock transcription factor 2 binding
            protein (Hsf2bp), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  aggaaaacactttccttatt 170
            ||||||||||||||||||||
Sbjct: 1604 aggaaaacactttccttatt 1623
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>ref|XM_484622.3| PREDICTED: Mus musculus heat shock transcription factor 2 binding
            protein (Hsf2bp), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  aggaaaacactttccttatt 170
            ||||||||||||||||||||
Sbjct: 1604 aggaaaacactttccttatt 1623
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>gb|AC124688.3| Mus musculus BAC clone RP24-484D9 from chromosome 14, complete sequence
          Length = 141678

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   tgcaatcgccttcagttcct 271
             ||||||||||||||||||||
Sbjct: 54746 tgcaatcgccttcagttcct 54727
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>ref|XM_548023.2| PREDICTED: Canis familiaris similar to guanine nucleotide binding
           protein (G protein), alpha 13 (LOC490901), mRNA
          Length = 949

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 ccactgtctgcccacagtgc 402
           ||||||||||||||||||||
Sbjct: 185 ccactgtctgcccacagtgc 166
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>gb|AC138228.10| Mus musculus chromosome 17, clone RP23-304G12, complete sequence
          Length = 225739

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   aggaaaacactttccttatt 170
             ||||||||||||||||||||
Sbjct: 62796 aggaaaacactttccttatt 62815
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>gb|AC006320.4| Homo sapiens PAC clone RP5-839O24 from 7, complete sequence
          Length = 94793

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   acatacatacacacattcccacca 136
             |||||||||||||||||| |||||
Sbjct: 55906 acatacatacacacattcacacca 55883
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>gb|AC103363.6| Mus musculus chromosome 17, clone RP24-247H9, complete sequence
          Length = 222909

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  tgcaatcgccttcagttcct 271
            ||||||||||||||||||||
Sbjct: 4851 tgcaatcgccttcagttcct 4832
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>emb|BX640931.1|HSM807077 Homo sapiens genomic DNA; cDNA DKFZp686B05123 (from clone
            DKFZp686B05123)
          Length = 3463

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   tttttcatgacaagttcaga 103
            ||||||||||||||||||||
Sbjct: 2782 tttttcatgacaagttcaga 2763
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>gb|AC108210.4| Homo sapiens BAC clone RP11-457P14 from 4, complete sequence
          Length = 123377

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    cacatgtacaatagcacaat 44
             ||||||||||||||||||||
Sbjct: 30750 cacatgtacaatagcacaat 30731
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>dbj|AK016553.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4932437G14 product:heat shock
            transcription factor 2 binding protein, full insert
            sequence
          Length = 2853

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  aggaaaacactttccttatt 170
            ||||||||||||||||||||
Sbjct: 1591 aggaaaacactttccttatt 1610
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>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone
             BACR03M20, complete sequence
          Length = 175335

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   caagacatacatacacacat 128
             ||||||||||||||||||||
Sbjct: 11644 caagacatacatacacacat 11663
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>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete
             sequence
          Length = 176118

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   acatacatacacacattcccacca 136
             |||||||||||||||||| |||||
Sbjct: 86333 acatacatacacacattcacacca 86310
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>gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosome 17, complete
             sequence
          Length = 140053

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   tgcaatcgccttcagttcct 271
             ||||||||||||||||||||
Sbjct: 18489 tgcaatcgccttcagttcct 18508
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>gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   aaaacactttccttattcaa 173
             ||||||||||||||||||||
Sbjct: 82510 aaaacactttccttattcaa 82529
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>emb|AL606494.4| Mouse DNA sequence from clone RP23-198B6 on chromosome 2, complete
              sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    acatacatacacacattccc 132
              ||||||||||||||||||||
Sbjct: 174215 acatacatacacacattccc 174196
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>emb|BX284612.22| Mouse DNA sequence from clone RP23-332H17 on chromosome 2, complete
              sequence
          Length = 132718

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    agacatacatacacacattc 130
              ||||||||||||||||||||
Sbjct: 131908 agacatacatacacacattc 131889
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>dbj|AK106143.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G11, full
            insert sequence
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   agcacaattcttgctgctcaatttacat 64
            ||||||||||||| |||| |||||||||
Sbjct: 1882 agcacaattcttggtgctgaatttacat 1855
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>dbj|AK104374.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G01, full
            insert sequence
          Length = 1949

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   agcacaattcttgctgctcaatttacat 64
            ||||||||||||| |||| |||||||||
Sbjct: 1882 agcacaattcttggtgctgaatttacat 1855
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>dbj|AK101500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043P15, full
            insert sequence
          Length = 1922

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   agcacaattcttgctgctcaatttacat 64
            ||||||||||||| |||| |||||||||
Sbjct: 1868 agcacaattcttggtgctgaatttacat 1841
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>dbj|AK071579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102O20, full
            insert sequence
          Length = 1943

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   agcacaattcttgctgctcaatttacat 64
            ||||||||||||| |||| |||||||||
Sbjct: 1889 agcacaattcttggtgctgaatttacat 1862
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>dbj|AK069680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J06, full
            insert sequence
          Length = 1115

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 37   agcacaattcttgctgctcaatttacat 64
            ||||||||||||| |||| |||||||||
Sbjct: 1077 agcacaattcttggtgctgaatttacat 1050
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>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete
              sequence
          Length = 228547

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    caagacatacatacacacat 128
              ||||||||||||||||||||
Sbjct: 106853 caagacatacatacacacat 106872
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>dbj|AP000767.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-878E11, complete
             sequence
          Length = 190524

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tttttcatgacaagttcaga 103
             ||||||||||||||||||||
Sbjct: 27884 tttttcatgacaagttcaga 27903
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>emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chromosome 17, complete
            sequence
          Length = 177126

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  aggaaaacactttccttatt 170
            ||||||||||||||||||||
Sbjct: 2248 aggaaaacactttccttatt 2229
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>emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chromosome 2, complete
            sequence
          Length = 118597

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 111  agacatacatacacacattc 130
            ||||||||||||||||||||
Sbjct: 1190 agacatacatacacacattc 1171
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>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence
          Length = 338234

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   caagacatacatacacacat 128
             ||||||||||||||||||||
Sbjct: 76865 caagacatacatacacacat 76846
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>gb|AC161414.3| Mus musculus chromosome 1, clone CH36-500J15, complete sequence
          Length = 165234

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   ctgcccacagtgcctaagca 409
             ||||||||||||||||||||
Sbjct: 72049 ctgcccacagtgcctaagca 72068
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>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene
          Length = 80423

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   caagacatacatacacacat 128
             ||||||||||||||||||||
Sbjct: 76865 caagacatacatacacacat 76846
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>emb|AL607090.12| Mouse DNA sequence from clone RP23-273I17 on chromosome 4, complete
              sequence
          Length = 153056

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    caagacatacatacacacat 128
              ||||||||||||||||||||
Sbjct: 102509 caagacatacatacacacat 102490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,615,572
Number of Sequences: 3902068
Number of extensions: 4615572
Number of successful extensions: 125208
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125111
Number of HSP's gapped (non-prelim): 97
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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