ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49a12 |
|---|---|
| Clone Library Name | barley_pub |
>OPR3_ARATH (Q9FUP0) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (Delayed dehiscence 1) (AtOPR3) Length = 391 Score = 39.3 bits (90), Expect = 0.003 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFLSKPKSRM 188 FYT DPVVGYTDYPFL+ P SR+ Sbjct: 370 FYTQDPVVGYTDYPFLA-PFSRL 391
>OPR3_LYCES (Q9FEW9) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) Length = 396 Score = 37.7 bits (86), Expect = 0.008 Identities = 15/16 (93%), Positives = 15/16 (93%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFL 209 FYT DPVVGYTDYPFL Sbjct: 369 FYTQDPVVGYTDYPFL 384
>OPR1_ARATH (Q8LAH7) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (AtOPR1) (FS-AT-I) Length = 372 Score = 37.7 bits (86), Expect = 0.008 Identities = 15/16 (93%), Positives = 15/16 (93%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFL 209 FYT DPVVGYTDYPFL Sbjct: 353 FYTSDPVVGYTDYPFL 368
>OPR1_LYCES (Q9XG54) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase 1) (LeOPR1) Length = 376 Score = 37.4 bits (85), Expect = 0.010 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFL 209 FYT DP+VGYTDYPFL Sbjct: 357 FYTSDPIVGYTDYPFL 372
>OPRL_LYCES (Q9FEX0) 12-oxophytodienoate reductase-like protein (EC 1.3.1.-)| (LeOPR2) Length = 355 Score = 36.6 bits (83), Expect = 0.017 Identities = 13/16 (81%), Positives = 15/16 (93%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFL 209 FYT DP++GYTDYPFL Sbjct: 336 FYTNDPIIGYTDYPFL 351
>OPR2_ARATH (Q8GYB8) 12-oxophytodienoate reductase 2 (EC 1.3.1.42)| (12-oxophytodienoate-10,11-reductase 2) (OPDA-reductase 2) (AtOPR2) Length = 374 Score = 34.7 bits (78), Expect = 0.066 Identities = 14/16 (87%), Positives = 14/16 (87%) Frame = -3 Query: 256 FYTPDPVVGYTDYPFL 209 FYT DPVVGYTDYP L Sbjct: 355 FYTSDPVVGYTDYPSL 370
>RDRP_TMOB (P90211) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 31.6 bits (70), Expect = 0.56 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NYSH Y + KY+ +T+ P+ R YM+ + + NT K + L + TLY Sbjct: 268 LNYSHSYSNLL-KYVCKTYFPASNRFVYMKEFLITRVNTWFCKFTKLDTYTLY 319
>RDRP_TOMS1 (Q9YKD6) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 30.8 bits (68), Expect = 0.96 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLYTLHARFR 202 +NYSH Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYSHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYK------ 320 Query: 203 LAEERVVGVTHDGV 244 GV H GV Sbjct: 321 -------GVAHKGV 327
>RDRP_TOML (P03587) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 30.8 bits (68), Expect = 0.96 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLYTLHARFR 202 +NYSH Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYSHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYK------ 320 Query: 203 LAEERVVGVTHDGV 244 GV H GV Sbjct: 321 -------GVAHKGV 327
>RDRP_TOMK1 (Q9Q1T8) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 30.8 bits (68), Expect = 0.96 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLYTLHARFR 202 +NYSH Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYSHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYK------ 320 Query: 203 LAEERVVGVTHDGV 244 GV H GV Sbjct: 321 -------GVAHKGV 327
>YCF2_PSINU (Q8WHW9) Protein ycf2| Length = 2313 Score = 30.8 bits (68), Expect = 0.96 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = +2 Query: 29 NYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSKSNLRSLTLYTLHARFRLA 208 N S YY + I+ TH+PS + + ISPN L N+R L ++ F LA Sbjct: 1707 NNSSNYYVRNNIIIAPTHIPSKVDPSF------ISPNRLDQLINIRRLNIHQREREF-LA 1759 Query: 209 EERVVGVTHDG 241 RV G + G Sbjct: 1760 LLRVKGFYYKG 1770
>RDRP_PMMVS (P29098) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY+H Y + KY+ +T+ P+ R YM+ + + NT K S L + LY Sbjct: 267 LNYTHSYSNVL-KYVCKTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLY 318
>RDRP_PMMVJ (P89657) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY+H Y + KY+ +T+ P+ R YM+ + + NT K S L + LY Sbjct: 267 LNYTHSYSNVL-KYVCKTYFPASSREVYMKEFLVTRVNTWFCKFSRLDTFVLY 318
>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,| mitochondrial precursor Length = 739 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +2 Query: 110 MRVYDLISPNTLHSKSNLRSLTLYTLHARFRLAEERVVGVTHDGVRG 250 MR+ + + + L S+ + SLT+ L A R R +GVT D ++G Sbjct: 349 MRLRSIKADDKLISEEGVDSLTVKELQAACRARGMRALGVTEDRLKG 395
>LETM1_MOUSE (Q9Z2I0) Leucine zipper-EF-hand containing transmembrane protein 1,| mitochondrial precursor Length = 738 Score = 28.5 bits (62), Expect = 4.8 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +2 Query: 110 MRVYDLISPNTLHSKSNLRSLTLYTLHARFRLAEERVVGVTHDGVRG 250 MR+ + + + L S+ + SLT+ L A R R +GVT D ++G Sbjct: 349 MRLRSIKADDKLISEEGVDSLTVKELQAACRARGMRALGVTEDRLKG 395
>RDRP_TMVOM (O93058) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY H Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYCHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLY 319
>RDRP_TMVKR (P30738) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY H Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYCHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLY 319
>RDRP_TMVB (Q9YQ08) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY H Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYCHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLY 319
>RDRP_TMV (P03586) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1616 Score = 28.1 bits (61), Expect = 6.2 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +2 Query: 26 INYSHVYYFICSKYISQTHLPSLIRVHYMRVYDLISPNTLHSK-SNLRSLTLY 181 +NY H Y I KY+ +T+ P+ R YM+ + + NT K S + + LY Sbjct: 268 LNYCHSYSNIL-KYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLY 319
>LPXH_XYLFT (Q87A66) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)| Length = 250 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 227 HRLPVPQQAEIAHVVCTRLVIGDW 156 HR P ++A CTR+V+GDW Sbjct: 205 HR-PALHMLQVAECACTRVVLGDW 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,024,474 Number of Sequences: 219361 Number of extensions: 829642 Number of successful extensions: 1746 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1746 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
