ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart49a11 |
|---|---|
| Clone Library Name | barley_pub |
>ASNS_ASPOF (P31752) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (AS) Length = 589 Score = 83.2 bits (204), Expect = 1e-16 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 6/67 (8%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAG------TSKKPRMIKVAA 169 TAKA+EWDARWS NLDPSGRAALGVH SAY+ LP++I AG T+KKPR++ VA Sbjct: 524 TAKAIEWDARWSNNLDPSGRAALGVHDSAYDPP-LPSSISAGKGAAMITNKKPRIVDVAT 582 Query: 168 PGVAIES 148 PGV I + Sbjct: 583 PGVVIST 589
>ASNS1_PEA (P19251) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 585 Score = 67.8 bits (164), Expect = 7e-12 Identities = 35/61 (57%), Positives = 41/61 (67%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKKPRMIKVAAPGVAIE 151 T KA+EWDA WS NLDPSGRAALGVH+SAYE + P T K I V+ GVAI+ Sbjct: 525 TEKAIEWDASWSNNLDPSGRAALGVHVSAYEHQINPVTKGVEPEKIIPKIGVSPLGVAIQ 584 Query: 150 S 148 + Sbjct: 585 T 585
>ASNS_ARATH (P49078) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 583 Score = 65.5 bits (158), Expect = 3e-11 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 2/63 (3%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATI--MAGTSKKPRMIKVAAPGVA 157 TAKAVEWDA WS N+DPSGRAA+GVHLSAY+ +++ TI + P M+ GV Sbjct: 524 TAKAVEWDASWSNNMDPSGRAAIGVHLSAYDGKNVALTIPPLKAIDNMPMMM---GQGVV 580 Query: 156 IES 148 I+S Sbjct: 581 IQS 583
>ASNS1_LOTJA (P49092) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 1) Length = 585 Score = 63.9 bits (154), Expect = 9e-11 Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 2/63 (3%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKKPRMIKVAAP--GVA 157 TAKAVEWDA WS NLDPSGRAALGVHLSAY+ + I + ++I + AP GVA Sbjct: 524 TAKAVEWDAAWSNNLDPSGRAALGVHLSAYDDKQ-NNLINNKPVEFEKLIPMEAPSLGVA 582 Query: 156 IES 148 I S Sbjct: 583 IHS 585
>ASNS_BRAOL (P49091) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 61.2 bits (147), Expect = 6e-10 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYE 238 TAKAVEWDA WS N+DPSGRAA+GVHLSAY+ Sbjct: 525 TAKAVEWDASWSNNMDPSGRAAIGVHLSAYD 555
>ASNS2_PEA (P19252) Asparagine synthetase, root [glutamine-hydrolyzing] (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase) Length = 582 Score = 61.2 bits (147), Expect = 6e-10 Identities = 28/34 (82%), Positives = 29/34 (85%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEH 229 TAKAVEWDA WS NLDPSGRAALGVH SAYE + Sbjct: 524 TAKAVEWDAAWSNNLDPSGRAALGVHDSAYENHN 557
>ASNS2_LOTJA (P49093) Asparagine synthetase [glutamine-hydrolyzing] 2 (EC| 6.3.5.4) (Glutamine-dependent asparagine synthetase 2) Length = 585 Score = 60.5 bits (145), Expect = 1e-09 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 3/64 (4%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKK---PRMIKVAAPGV 160 T KA+EWDA WS NLDPSGRAALGVH SAY+ + L ++ G + P+M +V+ GV Sbjct: 524 TEKAIEWDAAWSNNLDPSGRAALGVHDSAYD-DQLNKSVSKGVEPEKIIPKM-EVSPLGV 581 Query: 159 AIES 148 AI S Sbjct: 582 AILS 585
>ASNS_ORYSA (Q43011) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 590 Score = 58.9 bits (141), Expect = 3e-09 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYE 238 TAKAVEWDA WS NLDPSGRAALGVH +AYE Sbjct: 524 TAKAVEWDAAWSKNLDPSGRAALGVHDAAYE 554
>ASNS_TRIVS (O24661) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 53.1 bits (126), Expect = 2e-07 Identities = 30/53 (56%), Positives = 33/53 (62%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKKPRMIKVA 172 TA AV WDA WS NLDPSGRAA GVH AYE H+P G K +M V+ Sbjct: 524 TATAVAWDASWSKNLDPSGRAATGVHDLAYE-NHVP----IGNLKSKKMDSVS 571
>ASNB_ECOLI (P22106) Asparagine synthetase B [glutamine-hydrolyzing] (EC| 6.3.5.4) Length = 553 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYE 238 +AKA+EWD + DPSGR A+GVH SAY+ Sbjct: 524 SAKAIEWDEAFKKMDDPSGR-AVGVHQSAYK 553
>DNLJ_MYCLE (O33102) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 694 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 222 LGDAPAHRPRDGLQVLLSLRDPGSPTTEHPTLL 320 LG RP Q L+LRD G P +EH TL+ Sbjct: 238 LGHIEGFRPATQHQAYLALRDWGLPVSEHTTLV 270
>GLYA_GLUOX (Q5FNK4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 434 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = -2 Query: 321 AVEWDARWSGNLDPSGRAALGV----HLSAYEQEHLPATIMAGTSKKPRMIKVA 172 A + +W ++ RA G+ + A +EH P I+AG+S PR+I A Sbjct: 142 APNYSGKWFNSVQYGVRAEDGLIDYDQMEALAREHKPKIIVAGSSAYPRVIDFA 195
>PSD2_PEA (P81930) Defense-related peptide 2 (Defensin-2) (Antifungal protein| Psd2) Length = 47 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +1 Query: 154 NCDTRCRNLDHPRLLAGSCHDG--CW 225 NC+ CRN +H LL+G C D CW Sbjct: 19 NCNKHCRNNEH--LLSGRCRDDFRCW 42
>10KD_VIGUN (P18646) 10 kDa protein precursor (Clone PSAS10)| Length = 75 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +1 Query: 145 STLNCDTRCRNLDHPRLLAGSCHDG--CW 225 +T +CD C+N +H LL+G C D CW Sbjct: 44 TTGSCDDHCKNKEH--LLSGRCRDDVRCW 70
>LUXS_STRPY (P0C0C7) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP8 (P0A3P9) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP6 (Q5XAN3) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP3 (P0A3P8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>LUXS_STRP1 (P0C0C8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ Q + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-QNSIETAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>FOXH1_XENLA (P70056) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (xFAST-1) Length = 518 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -1 Query: 277 RESSTWSPSLGL*AGASPSNHHG 209 RE TWSP G G SP H G Sbjct: 62 REGGTWSPDRGSMYGLSPGTHEG 84
>D108B_PANTR (Q5IAA6) Beta-defensin 108B precursor (Defensin, beta 108B)| (Defensin, beta 108) (Beta-defensin 8) (DEFB-8) (BD-8) (cBD-8) (Fragment) Length = 53 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 202 GSCHDGCWEMLLLIGREMDSK-CCSP*GIQ 288 GSC D C E + +GR ++S+ CC P G Q Sbjct: 13 GSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 42
>ATP6_PYLLI (Q37601) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 248 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +2 Query: 137 GHHQLSIATPGAATLIILGFLLVPAMMVA 223 G H LS+ PG T I+L FLLVP +V+ Sbjct: 137 GFHMLSLFLPG-GTSIVLAFLLVPIEIVS 164
>CJ111_HUMAN (Q8N326) Protein C10orf111| Length = 155 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Frame = -2 Query: 297 SGNLDPSGRAALGVHL-SAYEQEHLPATIMAGTSKKPRM 184 +GNL+P R A+ V L SA +++P+++ G SK+ R+ Sbjct: 31 AGNLEPEKRKAVRVALSSATAAQNIPSSVHCGCSKQWRL 69
>D108B_HUMAN (Q8NET1) Beta-defensin 108B precursor (Defensin, beta 108B)| (Defensin, beta 108) (Beta-defensin 8) (DEFB-8) (BD-8) (hBD-8) Length = 73 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 202 GSCHDGCWEMLLLIGREMDSK-CCSP*GIQ 288 GSC D C E + +GR ++S+ CC P G Q Sbjct: 33 GSCRDFCLETEIHVGRCLNSQPCCLPLGHQ 62
>MFGM_RAT (P70490) Lactadherin precursor (Milk fat globule-EGF factor 8)| (MFG-E8) (O-acetyl GD3 ganglioside synthase) (AGS) (MFGM) Length = 427 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = +1 Query: 124 GKQDRTPSTLNCDTRCRNLDHPRLLAGSCHDGCWEMLLLIGREMDSKCCSP*GIQ 288 G QD +N + RL SCH GC L+G E+ C P G++ Sbjct: 226 GNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLGCELHG-CSEPLGLK 279
>EMR2_HUMAN (Q9UHX3) EGF-like module-containing mucin-like hormone| receptor-like 2 precursor (EGF-like module EMR2) (CD312 antigen) Length = 823 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 196 EAEDDQGCGTWCRN*ELMVSCPACR 122 E +D +GC WC V+ ACR Sbjct: 22 ETQDSRGCARWCPQDSSCVNATACR 46
>CD97_HUMAN (P48960) CD97 antigen precursor (Leukocyte antigen CD97)| Length = 835 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -1 Query: 196 EAEDDQGCGTWCRN*ELMVSCPACR 122 E +D +GC WC V+ ACR Sbjct: 19 ETQDSRGCARWCPQNSSCVNATACR 43
>LUXS_STRMU (Q8DVK8) S-ribosylhomocysteine lyase (EC 4.4.1.21) (Autoinducer-2| production protein luxS) (AI-2 synthesis protein) Length = 160 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Frame = -3 Query: 221 QPSWQEPARSRG*SRLRHLVSQL---RVDGVLSCLPFLIRNKMYLVL 90 QP+ ++ + G + HL+++L R+DG++ C PF R +L++ Sbjct: 45 QPN-EDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPFGCRTGFHLIM 90
>ASNS_MAIZE (P49094) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)| (Glutamine-dependent asparagine synthetase) Length = 585 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGR 271 T A+EW +W + DPSGR Sbjct: 524 TPAAIEWVEQWKASNDPSGR 543
>GPA5_CAEEL (Q20701) Guanine nucleotide-binding protein alpha-5 subunit| Length = 385 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 16 SGFIRTIETLMHNLHSTLGLHH-SNGKTRYILFLIRNGKQ 132 S ++ T E L+H +TLG+H S T++I+ LI G Q Sbjct: 164 SNYVPTAEDLIHMRQTTLGVHEISFDYTKHIIRLIDVGGQ 203
>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/NT Length = 3010 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 61 STLGLHHSNGKTRYILFLIRNGKQDRTPSTLNCDTRC 171 S+ G +S G+ + FL++ K +TP L+ DTRC Sbjct: 2608 SSYGFQYSPGQR--VEFLVQAWKSKKTPMGLSYDTRC 2642
>SECA_STACA (P47994) Preprotein translocase secA subunit| Length = 844 Score = 27.3 bits (59), Expect = 9.8 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 309 DARWSGNLDPSGRAALGVHLSAYEQEH 229 D RW+ ++D + G+HL +Y Q++ Sbjct: 726 DGRWTDHIDTMDQLRQGIHLRSYGQQN 752
>AMPA_CAUCR (Q9A7M9) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 493 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = -2 Query: 330 TAKAVEWDARWSGNLDPSGRAALGVHLSAYEQEHLPATIMAGTSKKPRMIKVAA 169 T+ VE + + + + RAA G L+AY + T A +++K+AA Sbjct: 102 TSGVVELVLKLGADAETAARAAFGARLAAYRFDKYRTTEKAEKKPSVQVVKIAA 155
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 281 PQGEQHLESISRPMSRSISQQPSWQEPA 198 P+G+ L+ +SRP + S + SW PA Sbjct: 1164 PRGQGRLQELSRPHQPTPSSENSWAGPA 1191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,380,035 Number of Sequences: 219361 Number of extensions: 1093107 Number of successful extensions: 3177 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3176 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
