ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, c... 42 0.29
2gb|BC014733.1| Mus musculus yes-associated protein 1, mRNA (cDNA... 38 4.6
3gb|BC039125.1| Mus musculus yes-associated protein 1, mRNA (cDNA... 38 4.6
4gb|AC139885.3| Mus musculus BAC clone RP23-349N15 from chromosom... 38 4.6
5gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, comple... 38 4.6
6emb|AL035460.15|HS860F19 Human DNA sequence from clone RP5-860F1... 38 4.6
7emb|X80508.1|MMYAP65 M.musculus YAP65 mRNA 38 4.6
8ref|NM_009534.1| Mus musculus yes-associated protein 1 (Yap1), mRNA 38 4.6
9dbj|AK160543.1| Mus musculus ES cells cDNA, RIKEN full-length en... 38 4.6
10gb|AC022302.7|AC022302 Homo sapiens chromosome 15 clone CTD-2019... 38 4.6
11gb|BC094313.1| Mus musculus yes-associated protein 1, mRNA (cDNA... 38 4.6
12emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chr... 38 4.6
13emb|CT030639.8| Mouse DNA sequence from clone RP24-318P17 on chr... 38 4.6

>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence
          Length = 159722

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 24     ggctcatcaactgtgatttga 44
              |||||||||||||||||||||
Sbjct: 140859 ggctcatcaactgtgatttga 140879



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>gb|BC014733.1| Mus musculus yes-associated protein 1, mRNA (cDNA clone MGC:25351
            IMAGE:4239820), complete cds
          Length = 2569

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   aaagcggaacaacgatgga 102
            |||||||||||||||||||
Sbjct: 1808 aaagcggaacaacgatgga 1790



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>gb|BC039125.1| Mus musculus yes-associated protein 1, mRNA (cDNA clone MGC:11516
            IMAGE:2649070), complete cds
          Length = 3989

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   aaagcggaacaacgatgga 102
            |||||||||||||||||||
Sbjct: 1618 aaagcggaacaacgatgga 1600



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>gb|AC139885.3| Mus musculus BAC clone RP23-349N15 from chromosome 9, complete sequence
          Length = 207340

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     aaagcggaacaacgatgga 102
              |||||||||||||||||||
Sbjct: 118858 aaagcggaacaacgatgga 118840



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>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence
          Length = 214229

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     gtgggctcatcaactgtga 39
              |||||||||||||||||||
Sbjct: 101296 gtgggctcatcaactgtga 101314



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>emb|AL035460.15|HS860F19 Human DNA sequence from clone RP5-860F19 on chromosome 20p12.3-13
             Contains the gene for a novel protein (KIAA1442), the
             RPL19P1 gene for ribosomal protein L19 pseudogene 1, the
             CPX-1 gene for metallocarboxypeptidase, the C20orf141
             gene, a novel gene and four CpG islands, complete sequence
          Length = 135005

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ctcatcaactgtgatttga 44
             |||||||||||||||||||
Sbjct: 71693 ctcatcaactgtgatttga 71675



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>emb|X80508.1|MMYAP65 M.musculus YAP65 mRNA
          Length = 4125

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   aaagcggaacaacgatgga 102
            |||||||||||||||||||
Sbjct: 1755 aaagcggaacaacgatgga 1737



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>ref|NM_009534.1| Mus musculus yes-associated protein 1 (Yap1), mRNA
          Length = 4125

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   aaagcggaacaacgatgga 102
            |||||||||||||||||||
Sbjct: 1755 aaagcggaacaacgatgga 1737



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>dbj|AK160543.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410021C09 product:yes-associated protein, full
           insert sequence
          Length = 906

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  aaagcggaacaacgatgga 102
           |||||||||||||||||||
Sbjct: 467 aaagcggaacaacgatgga 449



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>gb|AC022302.7|AC022302 Homo sapiens chromosome 15 clone CTD-2019H15 map 15q21.2, complete
             sequence
          Length = 176872

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tcatcaactgtgatttgat 45
             |||||||||||||||||||
Sbjct: 42796 tcatcaactgtgatttgat 42778



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>gb|BC094313.1| Mus musculus yes-associated protein 1, mRNA (cDNA clone MGC:106687
            IMAGE:5697882), complete cds
          Length = 4137

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   aaagcggaacaacgatgga 102
            |||||||||||||||||||
Sbjct: 1751 aaagcggaacaacgatgga 1733



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>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete
              sequence
          Length = 187665

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     ctgtgatttgatctaggct 52
              |||||||||||||||||||
Sbjct: 116296 ctgtgatttgatctaggct 116314



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>emb|CT030639.8| Mouse DNA sequence from clone RP24-318P17 on chromosome 9, complete
             sequence
          Length = 198178

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    aaagcggaacaacgatgga 102
             |||||||||||||||||||
Sbjct: 18819 aaagcggaacaacgatgga 18801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 813,191
Number of Sequences: 3902068
Number of extensions: 813191
Number of successful extensions: 51095
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51078
Number of HSP's gapped (non-prelim): 17
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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