ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GCH1_DROME (P48596) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I... 31 0.92
2YJV5_YEAST (P40895) Hypothetical 13.9 kDa protein in HXT11-HXT8 ... 29 2.7

>GCH1_DROME (P48596) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I) (Protein|
           punch)
          Length = 324

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 187 LTSRVSLRCPPGSDTCRWNHPLNRDH*PPVTILLLP 294
           LT R S    PG + C ++H L  DH PP    LLP
Sbjct: 109 LTPRTSTT--PGHEKCTFHHDLELDHKPPTREALLP 142



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>YJV5_YEAST (P40895) Hypothetical 13.9 kDa protein in HXT11-HXT8 intergenic|
           region
          Length = 119

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 32  KYLLIWLRKLKYYAKKAVKIPKVLMVPLNLEQARVSIYPR 151
           +++L +LR   ++AKK  +IPK+L V    EQAR   Y R
Sbjct: 16  QFILFYLRVHVFHAKKRSEIPKLLRVQ---EQARSRNYSR 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,039,724
Number of Sequences: 219361
Number of extensions: 635952
Number of successful extensions: 1386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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