ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483226.1| Oryza sativa (japonica cultivar-group), mRNA 248 1e-62
2dbj|AK069190.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 5e-56
3ref|XM_483227.1| Oryza sativa (japonica cultivar-group), mRNA 180 3e-42
4dbj|AK072089.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
5gb|BT018093.1| Zea mays clone EL01N0552E08.c mRNA sequence 127 3e-26
6gb|AY110492.1| Zea mays CL13733_1 mRNA sequence 125 1e-25
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
8dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
9ref|XM_459502.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.6
10gb|AC124134.8| Mus musculus chromosome 12, clone RP23-235G12, co... 42 1.6
11emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 42 1.6
12emb|CR405785.1| Gallus gallus finished cDNA, clone ChEST571l20 42 1.6
13gb|AC125041.2| Mus musculus BAC clone RP23-337J19 from chromosom... 42 1.6
14gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, com... 40 6.3
15gb|AC167222.4| Mus musculus 10 BAC RP23-261G3 (Roswell Park Canc... 40 6.3
16gb|AC163753.5| Pan troglodytes BAC clone CH251-295G5 from chromo... 40 6.3
17gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome... 40 6.3
18gb|AC147056.3| Pan troglodytes BAC clone RP43-153F5 from 7, comp... 40 6.3
19gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 6.3
20gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 40 6.3
21emb|CR956382.7| Pig DNA sequence from clone CH242-231E9 on chrom... 40 6.3
22emb|CR703865.2|CNS0G61X Tetraodon nigroviridis full-length cDNA 40 6.3
23emb|CR683267.2|CNS0FQ5R Tetraodon nigroviridis full-length cDNA 40 6.3
24gb|AC005521.1| Homo sapiens PAC clone RP5-1106E3 from 7, complet... 40 6.3
25emb|AL591242.4| Human DNA sequence from clone RP11-446F17 on chr... 40 6.3
26emb|AL359378.12| Human DNA sequence from clone RP11-203H2 on chr... 40 6.3
27gb|AC160567.2| Pan troglodytes BAC clone CH251-304P1 from chromo... 40 6.3
28gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Ca... 40 6.3
29gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosom... 40 6.3
30dbj|AP000037.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 6.3
31emb|AL954210.1| Pan troglodytes chromosome 22 clone RP43-012J05 ... 40 6.3
32dbj|AP001714.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.3
33gb|AC174771.1| Gasterosteus aculeatus clone VMRC28-84K03, comple... 40 6.3
34gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Can... 40 6.3
35dbj|AP000275.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.3
36dbj|AP000181.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.3
37dbj|AP000105.1| Homo sapiens genomic DNA of 21q22.1, GART and AM... 40 6.3 
>ref|XM_483226.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1256

 Score =  248 bits (125), Expect = 1e-62
 Identities = 221/253 (87%)
 Strand = Plus / Minus

                                                                       
Query: 209 tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
           ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 966 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 907

                                                                       
Query: 269 cattgttcttcacaagtgcaatattggcttccaatgaagatcctccagttagtactttca 328
           |||||||||| ||||| |||||||||||||| |  ||||||| |||||||||||||||||
Sbjct: 906 cattgttctttacaagcgcaatattggcttctagcgaagatcgtccagttagtactttca 847

                                                                       
Query: 329 ctctgtcaaggatgaagggggtgattgtgtttcctattatctttttagcatctgcttcct 388
           |||||||||| |||||||| ||||| | ||| |||||||| |||||| | ||||||||||
Sbjct: 846 ctctgtcaagcatgaagggagtgatcgcgttgcctattatatttttatcctctgcttcct 787

                                                                       
Query: 389 ggagggattgctgtattgcagactctataacctttccagaagctgcatgttgcttcggaa 448
            ||||| || ||||||||||||||||||| | ||||| ||||||||||||| ||| ||||
Sbjct: 786 tgagggctttctgtattgcagactctatagcatttcctgaagctgcatgttccttgggaa 727

                        
Query: 449 ctggcactgcaat 461
             ||||| |||||
Sbjct: 726 tcggcacagcaat 714
to top
>dbj|AK069190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O19, full
           insert sequence
          Length = 1254

 Score =  226 bits (114), Expect = 5e-56
 Identities = 219/253 (86%), Gaps = 2/253 (0%)
 Strand = Plus / Minus

                                                                       
Query: 209 tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
           ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 964 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 905

                                                                       
Query: 269 cattgttcttcacaagtgcaatattggcttccaatgaagatcctccagttagtactttca 328
           |||||||||| ||||| |||||  ||||||| |  ||||||| |||||||||||||||||
Sbjct: 904 cattgttctttacaagcgcaat--tggcttctagcgaagatcgtccagttagtactttca 847

                                                                       
Query: 329 ctctgtcaaggatgaagggggtgattgtgtttcctattatctttttagcatctgcttcct 388
           |||||||||| |||||||| ||||| | ||| |||||||| |||||| | ||||||||||
Sbjct: 846 ctctgtcaagcatgaagggagtgatcgcgttgcctattatatttttatcctctgcttcct 787

                                                                       
Query: 389 ggagggattgctgtattgcagactctataacctttccagaagctgcatgttgcttcggaa 448
            ||||| || ||||||||||||||||||| | ||||| ||||||||||||| ||| ||||
Sbjct: 786 tgagggctttctgtattgcagactctatagcatttcctgaagctgcatgttccttgggaa 727

                        
Query: 449 ctggcactgcaat 461
             ||||| |||||
Sbjct: 726 tcggcacagcaat 714
to top
>ref|XM_483227.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1320

 Score =  180 bits (91), Expect = 3e-42
 Identities = 148/167 (88%)
 Strand = Plus / Minus

                                                                        
Query: 209  tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
            ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 1104 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 1045

                                                                        
Query: 269  cattgttcttcacaagtgcaatattggcttccaatgaagatcctccagttagtactttca 328
            |||||||||| ||||| |||||||||||||| |  ||||||| |||||||||||||||||
Sbjct: 1044 cattgttctttacaagcgcaatattggcttctagcgaagatcgtccagttagtactttca 985

                                                           
Query: 329  ctctgtcaaggatgaagggggtgattgtgtttcctattatcttttta 375
            |||||||||| |||||||| ||||| | ||| |||||||| ||||||
Sbjct: 984  ctctgtcaagcatgaagggagtgatcgcgttgcctattatattttta 938



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 379 tctgcttcctggagggattgctgtattgcagactctataacctttccagaagctgcatgt 438
           |||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 832 tctgcttccttgagggctttctgtattgcagactctatagcatttcctgaagctgcatgt 773

                                  
Query: 439 tgcttcggaactggcactgcaat 461
           | ||| ||||  ||||| |||||
Sbjct: 772 tccttgggaatcggcacagcaat 750
to top
>dbj|AK072089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B08, full
            insert sequence
          Length = 1320

 Score =  180 bits (91), Expect = 3e-42
 Identities = 148/167 (88%)
 Strand = Plus / Minus

                                                                        
Query: 209  tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
            ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 1104 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 1045

                                                                        
Query: 269  cattgttcttcacaagtgcaatattggcttccaatgaagatcctccagttagtactttca 328
            |||||||||| ||||| |||||||||||||| |  ||||||| |||||||||||||||||
Sbjct: 1044 cattgttctttacaagcgcaatattggcttctagcgaagatcgtccagttagtactttca 985

                                                           
Query: 329  ctctgtcaaggatgaagggggtgattgtgtttcctattatcttttta 375
            |||||||||| |||||||| ||||| | ||| |||||||| ||||||
Sbjct: 984  ctctgtcaagcatgaagggagtgatcgcgttgcctattatattttta 938



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 379 tctgcttcctggagggattgctgtattgcagactctataacctttccagaagctgcatgt 438
           |||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 832 tctgcttccttgagggctttctgtattgcagactctatagcatttcctgaagctgcatgt 773

                                  
Query: 439 tgcttcggaactggcactgcaat 461
           | ||| ||||  ||||| |||||
Sbjct: 772 tccttgggaatcggcacagcaat 750
to top
>gb|BT018093.1| Zea mays clone EL01N0552E08.c mRNA sequence
          Length = 1162

 Score =  127 bits (64), Expect = 3e-26
 Identities = 190/232 (81%)
 Strand = Plus / Minus

                                                                       
Query: 235 gaaagggctacagcaattttagcaccagtgagagcattgttcttcacaagtgcaatattg 294
           |||||||| |||||||| || |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 970 gaaagggcaacagcaatgttcgcaccaataagagcattgttcttaacaagtgcaatatta 911

                                                                       
Query: 295 gcttccaatgaagatcctccagttagtactttcactctgtcaaggatgaagggggtgatt 354
           |||||||| ||||||||| | || ||| |||| ||||| ||||| |||||||| ||||| 
Sbjct: 910 gcttccaaggaagatcctgcggtcagttcttttactctttcaagcatgaagggagtgatc 851

                                                                       
Query: 355 gtgtttcctattatctttttagcatctgcttcctggagggattgctgtattgcagactct 414
           |  |||||||||||| ||||| |  |||| || |  || | |  ||||||||||||||||
Sbjct: 850 gcatttcctattatccttttatcccctgcctcttttagagctgtctgtattgcagactct 791

                                                               
Query: 415 ataacctttccagaagctgcatgttgcttcggaactggcactgcaataagaa 466
           ||||  || || |||| |||||| ||||| || |  || |||||||||||||
Sbjct: 790 ataattttccctgaagttgcatgctgcttggggatcggtactgcaataagaa 739
to top
>gb|AY110492.1| Zea mays CL13733_1 mRNA sequence
          Length = 461

 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                       
Query: 235 gaaagggctacagcaattttagcaccagtgagagcattgttcttcacaagtgcaatattg 294
           |||||||| |||||||| || |||||| | |||||||||||||| |||||||||||||| 
Sbjct: 293 gaaagggcaacagcaatgttcgcaccaataagagcattgttcttaacaagtgcaatatta 352

                                                                      
Query: 295 gcttccaatgaagatcctccagttagtactttcactctgtcaaggatgaagggggtgat 353
           |||||||| ||||||||||| |||||| |||| ||||| ||||| |||||||| |||||
Sbjct: 353 gcttccaaggaagatcctccggttagttcttttactctttcaagcatgaagggagtgat 411
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                            
Query: 209      tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
                ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 24922976 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 24923035

                                        
Query: 269      cattgttcttcacaagtgcaatat 292
                |||||||||| ||||| |||||||
Sbjct: 24923036 cattgttctttacaagcgcaatat 24923059



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                            
Query: 304      gaagatcctccagttagtactttcactctgtcaaggatgaagggggtgattgtgtttcct 363
                ||||||| ||||||||||||||||||||||||||| |||||||| ||||| | ||| |||
Sbjct: 24923318 gaagatcgtccagttagtactttcactctgtcaagcatgaagggagtgatcgcgttgcct 24923377

                            
Query: 364      attatcttttta 375
                ||||| ||||||
Sbjct: 24923378 attatattttta 24923389



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                            
Query: 379      tctgcttcctggagggattgctgtattgcagactctataacctttccagaagctgcatgt 438
                |||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 24923495 tctgcttccttgagggctttctgtattgcagactctatagcatttcctgaagctgcatgt 24923554

                                       
Query: 439      tgcttcggaactggcactgcaat 461
                | ||| ||||  ||||| |||||
Sbjct: 24923555 tccttgggaatcggcacagcaat 24923577
to top
>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1134_H03
          Length = 135914

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                         
Query: 209   tgtttgttactctcttgcgaagatcggaaagggctacagcaattttagcaccagtgagag 268
             ||||||||||||||| | ||||||| |||||||| ||||||||||||||||||   ||||
Sbjct: 24691 tgtttgttactctctggtgaagatcagaaagggccacagcaattttagcaccaacaagag 24750

                                     
Query: 269   cattgttcttcacaagtgcaatat 292
             |||||||||| ||||| |||||||
Sbjct: 24751 cattgttctttacaagcgcaatat 24774



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                         
Query: 304   gaagatcctccagttagtactttcactctgtcaaggatgaagggggtgattgtgtttcct 363
             ||||||| ||||||||||||||||||||||||||| |||||||| ||||| | ||| |||
Sbjct: 25033 gaagatcgtccagttagtactttcactctgtcaagcatgaagggagtgatcgcgttgcct 25092

                         
Query: 364   attatcttttta 375
             ||||| ||||||
Sbjct: 25093 attatattttta 25104



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                         
Query: 379   tctgcttcctggagggattgctgtattgcagactctataacctttccagaagctgcatgt 438
             |||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 25210 tctgcttccttgagggctttctgtattgcagactctatagcatttcctgaagctgcatgt 25269

                                    
Query: 439   tgcttcggaactggcactgcaat 461
             | ||| ||||  ||||| |||||
Sbjct: 25270 tccttgggaatcggcacagcaat 25292
to top
>ref|XM_459502.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E04928g)
            partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 350  tgattgtgtttcctattatcttttt 374
            |||||||||||||||||||| ||||
Sbjct: 1415 tgattgtgtttcctattatcatttt 1439
to top
>gb|AC124134.8| Mus musculus chromosome 12, clone RP23-235G12, complete sequence
          Length = 220574

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 381    tgcttcctggagggattgctg 401
              |||||||||||||||||||||
Sbjct: 121944 tgcttcctggagggattgctg 121964
to top
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 350    tgattgtgtttcctattatcttttt 374
              |||||||||||||||||||| ||||
Sbjct: 356123 tgattgtgtttcctattatcatttt 356147
to top
>emb|CR405785.1| Gallus gallus finished cDNA, clone ChEST571l20
          Length = 706

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 159 tcacatgctccttcagcaggagcat 183
           ||||||||||| |||||||||||||
Sbjct: 407 tcacatgctccatcagcaggagcat 431
to top
>gb|AC125041.2| Mus musculus BAC clone RP23-337J19 from chromosome 12, complete sequence
          Length = 202288

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    tgcttcctggagggattgctg 401
              |||||||||||||||||||||
Sbjct: 197300 tgcttcctggagggattgctg 197280
to top
>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence
          Length = 188649

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tgttgtttgttactctcttg 225
             ||||||||||||||||||||
Sbjct: 33917 tgttgtttgttactctcttg 33936
to top
>gb|AC167222.4| Mus musculus 10 BAC RP23-261G3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 198762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   acagcaattttagcaccagt 263
             ||||||||||||||||||||
Sbjct: 66037 acagcaattttagcaccagt 66018
to top
>gb|AC163753.5| Pan troglodytes BAC clone CH251-295G5 from chromosome unknown, complete
              sequence
          Length = 176946

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     caagatacaaaatagtaaga 68
              ||||||||||||||||||||
Sbjct: 123976 caagatacaaaatagtaaga 123995
to top
>gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome 13, complete sequence
          Length = 173020

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    ttagcatctgcttcctggag 392
              ||||||||||||||||||||
Sbjct: 146091 ttagcatctgcttcctggag 146072
to top
>gb|AC147056.3| Pan troglodytes BAC clone RP43-153F5 from 7, complete sequence
          Length = 167738

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttatttattcagatgttact 30
             ||||||||||||||||||||
Sbjct: 83641 ttatttattcagatgttact 83660
to top
>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 371    ttttagcatctgcttcctggagggattg 398
              |||||| ||||||||||||| |||||||
Sbjct: 182760 ttttagtatctgcttcctggtgggattg 182733
to top
>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 371   ttttagcatctgcttcctggagggattg 398
             |||||| ||||||||||||| |||||||
Sbjct: 83336 ttttagtatctgcttcctggtgggattg 83309
to top
>emb|CR956382.7| Pig DNA sequence from clone CH242-231E9 on chromosome 6, complete
             sequence
          Length = 186091

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tagcatctgcttcctggagg 393
             ||||||||||||||||||||
Sbjct: 82640 tagcatctgcttcctggagg 82621
to top
>emb|CR703865.2|CNS0G61X Tetraodon nigroviridis full-length cDNA
          Length = 937

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 tcaaggatgaagggggtgat 353
           ||||||||||||||||||||
Sbjct: 613 tcaaggatgaagggggtgat 632
to top
>emb|CR683267.2|CNS0FQ5R Tetraodon nigroviridis full-length cDNA
          Length = 698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 tcaaggatgaagggggtgat 353
           ||||||||||||||||||||
Sbjct: 374 tcaaggatgaagggggtgat 393
to top
>gb|AC005521.1| Homo sapiens PAC clone RP5-1106E3 from 7, complete sequence
          Length = 136495

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    ttatttattcagatgttact 30
             ||||||||||||||||||||
Sbjct: 15666 ttatttattcagatgttact 15647
to top
>emb|AL591242.4| Human DNA sequence from clone RP11-446F17 on chromosome 6 Contains the
             5' end of the CYP39A1 gene for cytochrome P450 subfamily
             XXXIX (oxysterol 7 alpha-hydroxylase) polypeptide 1, the
             gene for uncoupling protein 4 (UCP4), a novel gene, the 3'
             end of the PLA2G7 gene for phospholipase A2, group VII
             (platelet-activating factor acetylhydrolase plasma) (PAFAH
             LDL-PLA2) and two CpG islands, complete sequence
          Length = 95107

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   agtgagagcattgttcttca 280
             ||||||||||||||||||||
Sbjct: 58776 agtgagagcattgttcttca 58795
to top
>emb|AL359378.12| Human DNA sequence from clone RP11-203H2 on chromosome 6 Contains part
             of a novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 100919

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tattatctttttagcatctg 382
             ||||||||||||||||||||
Sbjct: 26074 tattatctttttagcatctg 26093
to top
>gb|AC160567.2| Pan troglodytes BAC clone CH251-304P1 from chromosome unknown, complete
             sequence
          Length = 174998

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 37517 caagatacaaaatagtaaga 37536
to top
>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    acagcaattttagcaccagt 263
              ||||||||||||||||||||
Sbjct: 205645 acagcaattttagcaccagt 205664
to top
>gb|AC159103.1| Mus musculus BAC clone RP23-424O13 from chromosome 14, complete sequence
          Length = 195391

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      ttaaaacttatttattcagatgtt 27
              |||||||| |||||||||||||||
Sbjct: 166891 ttaaaactcatttattcagatgtt 166914
to top
>dbj|AP000037.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 8/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 47495 caagatacaaaatagtaaga 47476
to top
>emb|AL954210.1| Pan troglodytes chromosome 22 clone RP43-012J05 map 22q22.11, complete
             sequence
          Length = 168835

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 35488 caagatacaaaatagtaaga 35469
to top
>dbj|AP001714.1| Homo sapiens genomic DNA, chromosome 21q, section 58/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     caagatacaaaatagtaaga 68
              ||||||||||||||||||||
Sbjct: 251632 caagatacaaaatagtaaga 251613
to top
>gb|AC174771.1| Gasterosteus aculeatus clone VMRC28-84K03, complete sequence
          Length = 128214

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   tgtgtttcctattatctttt 373
             ||||||||||||||||||||
Sbjct: 12284 tgtgtttcctattatctttt 12303
to top
>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 167574

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    tttagcatctgcttcctgga 391
              ||||||||||||||||||||
Sbjct: 122707 tttagcatctgcttcctgga 122726
to top
>dbj|AP000275.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:T1866, complete sequence
          Length = 74600

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 47495 caagatacaaaatagtaaga 47476
to top
>dbj|AP000181.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 8/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 53471 caagatacaaaatagtaaga 53452
to top
>dbj|AP000105.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 8/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    caagatacaaaatagtaaga 68
             ||||||||||||||||||||
Sbjct: 53471 caagatacaaaatagtaaga 53452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,678,612
Number of Sequences: 3902068
Number of extensions: 4678612
Number of successful extensions: 84855
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84770
Number of HSP's gapped (non-prelim): 84
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top