ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 30 4.8
2WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein) 29 6.3
3ITRY_BAUVA (P83595) Trypsin inhibitor BvTI 29 6.3
4DRD2A_XENLA (P24628) D(2) dopamine receptor A (D2R-A) (D2R 1) 29 8.2
5IFXA_BAUUN (P83594) Factor Xa inhibitor BuXI 29 8.2

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
 Frame = +2

Query: 56  LNQHTRTLKSCTSAAIYTRQMTPYIHMPVAGSWSRIKWDKMNDAIP------NYIYKC-- 211
           +N H+R L+  TSA   ++ +    H+P+      +      + +P        I +C  
Sbjct: 314 MNCHSRYLRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRR 373

Query: 212 CRRLVNKNECVFYDAQRSWSCSALALL 292
           CR  VN     F D+ R W C+  ++L
Sbjct: 374 CRTYVNP-FVTFTDSGRKWRCNICSML 399



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>WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein)|
          Length = 456

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 353 KQHRTWVCPSGGFKANFTHCKARPMLNKTSCAARRRRHIH 234
           KQ     C +G   ++  HCK  P      C  R+RRH+H
Sbjct: 411 KQRSICKCRNGTCVSH-KHCKCHPGFYGRHCNGRKRRHVH 449



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>ITRY_BAUVA (P83595) Trypsin inhibitor BvTI|
          Length = 174

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 220 PTTTFVDIIWYCIVHFVPLDSGPRPCYWHV 131
           P + F+   W   + FV     P+P +WH+
Sbjct: 64  PRSLFISTSWRVTIQFVEATCIPKPSFWHI 93



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>DRD2A_XENLA (P24628) D(2) dopamine receptor A (D2R-A) (D2R 1)|
          Length = 442

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 1   KHKKVYIHLNSQGAILFQSKSTHTHTEELHICSYIYTANDTIYTHASSRVVVQ 159
           + K+V    NS+G  +   K   TH E++ +CS    +N +        ++VQ
Sbjct: 213 RRKRVNTKRNSRGVAVDAHKDKCTHPEDVKLCSVFVKSNGSFPADKKKVILVQ 265



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>IFXA_BAUUN (P83594) Factor Xa inhibitor BuXI|
          Length = 172

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 220 PTTTFVDIIWYCIVHFVPLDS-GPRPCYWHV 131
           P T F+   W   + F+ + +  P+P YWH+
Sbjct: 63  PRTMFISTAWRVSIQFLKVPTCTPKPSYWHI 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,635,501
Number of Sequences: 219361
Number of extensions: 1247716
Number of successful extensions: 2904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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