ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart49a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AK073953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
4dbj|AK060355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
5dbj|AK060197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
7gb|BT018472.1| Zea mays clone EL01N0422G04.d mRNA sequence 78 3e-11
8gb|AC123936.4| Mus musculus BAC clone RP23-408L3 from chromosome... 44 0.38
9gb|AC122275.4| Mus musculus BAC clone RP23-229G17 from 15, compl... 44 0.38
10ref|XM_367545.1| Magnaporthe grisea 70-15 chromosome III hypothe... 42 1.5
11emb|BX842589.1| Chimp DNA sequence from clone bCH-61P22, complet... 42 1.5
12gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Ho... 42 1.5
13emb|AL353583.15| Human DNA sequence from clone RP11-144I2 on chr... 42 1.5
14gb|AC158241.3| Pan troglodytes BAC clone CH251-351I22 from chrom... 42 1.5
15gb|AC153806.1| Homo sapiens chromosome 1 clone fa0649, complete ... 40 5.9
16ref|XM_513329.1| PREDICTED: Pan troglodytes similar to metal-reg... 40 5.9
17ref|NM_005955.1| Homo sapiens metal-regulatory transcription fac... 40 5.9
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.9
19gb|BC014454.1| Homo sapiens metal-regulatory transcription facto... 40 5.9
20gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 5.9
21ref|XM_845044.1| PREDICTED: Canis familiaris similar to Metal-re... 40 5.9
22emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on ch... 40 5.9
23gb|AC162365.5| Mus musculus chromosome 19, clone RP23-75P11, com... 40 5.9
24gb|AY309439.1| Bos taurus metal-responsive transcription factor ... 40 5.9
25emb|X78710.1|HSMTFMR H.sapiens MTF-1 mRNA for metal-regulatory t... 40 5.9
26emb|BX883042.1| Rattus norvegicus chromosome 20, major histocomp... 40 5.9
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
28dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
29gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complet... 40 5.9
30gb|AC008670.6| Homo sapiens chromosome 5 clone CTB-36O1, complet... 40 5.9
31dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
32dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
33dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
34gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequ... 40 5.9
35gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, co... 40 5.9
36gb|AC114424.10| Mus musculus chromosome 3, clone RP24-84L9, comp... 40 5.9
37dbj|AK060513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
38gb|AY454588.1| Uncultured crenarchaeote clone E_G01 16S ribosoma... 40 5.9
39gb|AY454587.1| Uncultured crenarchaeote clone E_C04 16S ribosoma... 40 5.9
40gb|AC006077.1|AC006077 Homo sapiens chromosome 5, P1 clone 254f1... 40 5.9
41gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, co... 40 5.9
42gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.64... 40 5.9
43emb|AL627302.20| Mouse DNA sequence from clone RP23-272D10 on ch... 40 5.9 
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16
              map C481S, complete sequence
          Length = 179668

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                          
Query: 327    gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
              ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 121883 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 121824

                       
Query: 387    gccgtcctc 395
              |||||||||
Sbjct: 121823 gccgtcctc 121815
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                            
Query: 327      gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
                ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 28163328 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 28163269

                         
Query: 387      gccgtcctc 395
                |||||||||
Sbjct: 28163268 gccgtcctc 28163260
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>dbj|AK073953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076G17, full
            insert sequence
          Length = 1380

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 327  gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
            ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 1136 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 1077

                     
Query: 387  gccgtcctc 395
            |||||||||
Sbjct: 1076 gccgtcctc 1068
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>dbj|AK060355.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G09, full
            insert sequence
          Length = 1420

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 327  gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
            ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 1176 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 1117

                     
Query: 387  gccgtcctc 395
            |||||||||
Sbjct: 1116 gccgtcctc 1108
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>dbj|AK060197.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-F05, full
            insert sequence
          Length = 1647

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                        
Query: 327  gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
            ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 1248 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 1189

                     
Query: 387  gccgtcctc 395
            |||||||||
Sbjct: 1188 gccgtcctc 1180
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 64/69 (92%)
 Strand = Plus / Minus

                                                                            
Query: 327      gggaggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtaccc 386
                ||||||||| |||||||||||||||  | ||||||||||||||| |||||||||||||||
Sbjct: 28148206 gggaggcgacggcaaggggatgaccttgttgttcttccccaccatgatggtgatgtaccc 28148147

                         
Query: 387      gccgtcctc 395
                |||||||||
Sbjct: 28148146 gccgtcctc 28148138
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>gb|BT018472.1| Zea mays clone EL01N0422G04.d mRNA sequence
          Length = 1502

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                        
Query: 331  ggcgaaggcaaggggatgacccgggtgttcttccccaccacgatggtgatgtacccgccg 390
            ||||| |||| ||||||||| ||| |||||||  ||||||||||||||||||||||||| 
Sbjct: 1128 ggcgacggcatggggatgacgcggttgttcttatccaccacgatggtgatgtacccgcca 1069

                       
Query: 391  tcctcgtcggc 401
            ||||| |||||
Sbjct: 1068 tcctcctcggc 1058
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>gb|AC123936.4| Mus musculus BAC clone RP23-408L3 from chromosome 15, complete sequence
          Length = 221204

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 95    cctttaagtcacaagtcacaga 116
             ||||||||||||||||||||||
Sbjct: 15762 cctttaagtcacaagtcacaga 15783
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>gb|AC122275.4| Mus musculus BAC clone RP23-229G17 from 15, complete sequence
          Length = 214490

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 95     cctttaagtcacaagtcacaga 116
              ||||||||||||||||||||||
Sbjct: 187745 cctttaagtcacaagtcacaga 187766
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>ref|XM_367545.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG07456.4) partial mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 399  ggccgccggcgatggcgaagg 419
            |||||||||||||||||||||
Sbjct: 1194 ggccgccggcgatggcgaagg 1214
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>emb|BX842589.1| Chimp DNA sequence from clone bCH-61P22, complete sequence
          Length = 201637

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    gggaggcgaaggcaaggggat 347
              |||||||||||||||||||||
Sbjct: 187726 gggaggcgaaggcaaggggat 187746
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>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 245907

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     ttgtctcctacaacaacaaaa 75
              |||||||||||||||||||||
Sbjct: 131013 ttgtctcctacaacaacaaaa 131033
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>emb|AL353583.15| Human DNA sequence from clone RP11-144I2 on chromosome 10 Contains part
             of a novel gene (DKFZp761L0424) (KIAA1217), complete
             sequence
          Length = 118906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 175   gccatgttcatgttatctaca 195
             |||||||||||||||||||||
Sbjct: 32549 gccatgttcatgttatctaca 32529
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>gb|AC158241.3| Pan troglodytes BAC clone CH251-351I22 from chromosome unknown, complete
              sequence
          Length = 218497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 327    gggaggcgaaggcaaggggat 347
              |||||||||||||||||||||
Sbjct: 154346 gggaggcgaaggcaaggggat 154366
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>gb|AC153806.1| Homo sapiens chromosome 1 clone fa0649, complete sequence
          Length = 35984

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 2631 cactgactgactctgcatca 2612
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>ref|XM_513329.1| PREDICTED: Pan troglodytes similar to metal-regulatory transcription
            factor 1 (LOC456766), mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1294 cactgactgactctgcatca 1275
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>ref|NM_005955.1| Homo sapiens metal-regulatory transcription factor 1 (MTF1), mRNA
          Length = 3302

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1299 cactgactgactctgcatca 1280
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 359     tcttccccaccacgatggtgatgt 382
               ||||| ||||||||||||||||||
Sbjct: 2800818 tcttctccaccacgatggtgatgt 2800841
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>gb|BC014454.1| Homo sapiens metal-regulatory transcription factor 1, mRNA (cDNA
            clone MGC:23036 IMAGE:4901099), complete cds
          Length = 2606

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1332 cactgactgactctgcatca 1313
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 262     aacactgactgactctgcat 281
               ||||||||||||||||||||
Sbjct: 1981319 aacactgactgactctgcat 1981338
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>ref|XM_845044.1| PREDICTED: Canis familiaris similar to Metal-regulatory transcription
            factor 1 (Transcription factor MTF-1) (MRE-binding
            transcription factor) (LOC608127), mRNA
          Length = 2373

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1342 cactgactgactctgcatca 1323
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>emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on chromosome 1 Contains a
             pseudogene similar to part of actinin alpha4 (ACTN4), a
             novel pseudogene, two genes for novel proteins (FLJ31434,
             FLJ45459), the gene for ischemia/reperfusion inducible
             protein (FLJ23476), the MTF1 gene for metal-regulatory
             transcription factor 1, a ribosomal protein S2 (RPS2)
             pseudogene, the 3' end of the INPP5B gene for 75kDa
             nositol polyphosphate-5-phosphatase, two novel genes and
             four CpG islands, complete sequence
          Length = 143060

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   cactgactgactctgcatca 283
             ||||||||||||||||||||
Sbjct: 51398 cactgactgactctgcatca 51417
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>gb|AC162365.5| Mus musculus chromosome 19, clone RP23-75P11, complete sequence
          Length = 157286

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   tccccaccacgatggtgatg 381
             ||||||||||||||||||||
Sbjct: 74256 tccccaccacgatggtgatg 74275
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>gb|AY309439.1| Bos taurus metal-responsive transcription factor 1 mRNA, partial cds
          Length = 2253

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1216 cactgactgactctgcatca 1197
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>emb|X78710.1|HSMTFMR H.sapiens MTF-1 mRNA for metal-regulatory transcription factor
          Length = 3302

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  cactgactgactctgcatca 283
            ||||||||||||||||||||
Sbjct: 1299 cactgactgactctgcatca 1280
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>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 1/11
          Length = 348780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    caggacatccaatcatccaa 213
              ||||||||||||||||||||
Sbjct: 193165 caggacatccaatcatccaa 193184
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 400     gccgccggcgatggcgaaggcgac 423
               ||||||||||||||||| ||||||
Sbjct: 3926863 gccgccggcgatggcgatggcgac 3926840
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 398      cggccgccggcgatggcgaa 417
                ||||||||||||||||||||
Sbjct: 22928143 cggccgccggcgatggcgaa 22928162
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>gb|AC114788.4| Homo sapiens BAC clone RP11-648F7 from 2, complete sequence
          Length = 116951

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 310   caggcgctgccaggagcgggaggc 333
             ||||||||||| ||||||||||||
Sbjct: 69694 caggcgctgcccggagcgggaggc 69671
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>gb|AC008670.6| Homo sapiens chromosome 5 clone CTB-36O1, complete sequence
          Length = 126034

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 85     ttaacctgcgcctttaagtcacaa 108
              |||||||||||||| |||||||||
Sbjct: 116238 ttaacctgcgccttaaagtcacaa 116261
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>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1449_C01
          Length = 192857

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 400    gccgccggcgatggcgaaggcgac 423
              ||||||||||||||||| ||||||
Sbjct: 192080 gccgccggcgatggcgatggcgac 192057
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>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502H06
          Length = 165630

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    cggccgccggcgatggcgaa 417
              ||||||||||||||||||||
Sbjct: 102965 cggccgccggcgatggcgaa 102984
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>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0462E11
          Length = 166115

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 400   gccgccggcgatggcgaaggcgac 423
             ||||||||||||||||| ||||||
Sbjct: 14160 gccgccggcgatggcgatggcgac 14137
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>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence
          Length = 137074

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    aacactgactgactctgcat 281
              ||||||||||||||||||||
Sbjct: 121753 aacactgactgactctgcat 121772
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>gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, complete sequence
          Length = 208984

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    tgggattgatcccaagttct 165
              ||||||||||||||||||||
Sbjct: 152497 tgggattgatcccaagttct 152516
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>gb|AC114424.10| Mus musculus chromosome 3, clone RP24-84L9, complete sequence
          Length = 220500

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    aagtcacaagtcacagacta 119
              ||||||||||||||||||||
Sbjct: 187853 aagtcacaagtcacagacta 187872
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>dbj|AK060513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F01, full
            insert sequence
          Length = 1734

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  cggccgccggcgatggcgaa 417
            ||||||||||||||||||||
Sbjct: 1525 cggccgccggcgatggcgaa 1544
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>gb|AY454588.1| Uncultured crenarchaeote clone E_G01 16S ribosomal RNA gene,
           partial sequence
          Length = 1002

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 aaaagccacctttttcaggc 314
           ||||||||||||||||||||
Sbjct: 55  aaaagccacctttttcaggc 36
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>gb|AY454587.1| Uncultured crenarchaeote clone E_C04 16S ribosomal RNA gene,
           partial sequence
          Length = 1054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 aaaagccacctttttcaggc 314
           ||||||||||||||||||||
Sbjct: 105 aaaagccacctttttcaggc 86
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>gb|AC006077.1|AC006077 Homo sapiens chromosome 5, P1 clone 254f11 (LBNL H62), complete
             sequence
          Length = 87424

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    ttaacctgcgcctttaagtcacaa 108
             |||||||||||||| |||||||||
Sbjct: 61178 ttaacctgcgccttaaagtcacaa 61155
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>gb|AC113075.9| Mus musculus chromosome 19, clone RP23-278F24, complete sequence
          Length = 171837

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    tccccaccacgatggtgatg 381
              ||||||||||||||||||||
Sbjct: 149538 tccccaccacgatggtgatg 149519
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>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence
          Length = 172084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     atgctgacctgagtccattt 23
             ||||||||||||||||||||
Sbjct: 47588 atgctgacctgagtccattt 47569
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>emb|AL627302.20| Mouse DNA sequence from clone RP23-272D10 on chromosome X, complete
             sequence
          Length = 191439

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    acaacaacaaaattacagtg 83
             ||||||||||||||||||||
Sbjct: 36339 acaacaacaaaattacagtg 36358


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,308,300
Number of Sequences: 3902068
Number of extensions: 4308300
Number of successful extensions: 92231
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91967
Number of HSP's gapped (non-prelim): 264
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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