ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IN21_MAIZE (P49248) IN2-1 protein 87 2e-17
2SOCS4_MOUSE (Q91ZA6) Suppressor of cytokine signaling 4 (SOCS-4)... 32 0.71
3OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor ... 32 0.71
4SOCS4_HUMAN (Q8WXH5) Suppressor of cytokine signaling 4 (SOCS-4)... 32 0.71
5SOCS5_MOUSE (O54928) Cytokine-inducible SH2-containing protein 5... 30 2.7
6SOCS5_HUMAN (O75159) Cytokine-inducible SH2-containing protein 5... 30 2.7
7MYLIP_MOUSE (Q8BM54) Ubiquitin ligase MYLIP (EC 6.3.2.-) (Myosin... 30 2.7
8MYLIP_HUMAN (Q8WY64) Ubiquitin ligase MYLIP (EC 6.3.2.-) (Myosin... 30 4.6

>IN21_MAIZE (P49248) IN2-1 protein|
          Length = 243

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 40/68 (58%), Positives = 52/68 (76%)
 Frame = -2

Query: 494 QFSLVDIAYVPFIERFQIFFSGIKNYDITKDRPNIQKFIEEVNKIDAYTQTKLDPQFLLQ 315
           QFSL D+AYV  +ER QI++S ++NYDI + RPN+Q+FI+E+NKI+AY QTK DP FLL 
Sbjct: 175 QFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLD 234

Query: 314 HTKKRLGI 291
             K  L I
Sbjct: 235 LAKSHLKI 242



to top

>SOCS4_MOUSE (Q91ZA6) Suppressor of cytokine signaling 4 (SOCS-4) (Suppressor of|
           cytokine signaling 7) (SOCS-7)
          Length = 436

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 412 SPRTDLTFRNSSRK*TRSMHTHKRSWTHNFCFNTQRSGLGLSEDMT 275
           S + D  F  S R+ +RS+H     W HNF F+     +  S D+T
Sbjct: 310 SAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDIT 355



to top

>OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor TPCR92)|
          Length = 319

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 255 PGLCSCLVISSLNPKPLLCVLKQKLWVQLRLCVCIDLVHFLDEFLNV------RSVLGDI 416
           P LC  LV++S     L  +L+  + V+L  C  +++ HF  E   V       S L  +
Sbjct: 138 PHLCGLLVLASWTMSALYSLLQILMVVRLSFCTALEIPHFFCELNQVIQLACSDSFLNHM 197

Query: 417 IVFYT 431
           ++++T
Sbjct: 198 VIYFT 202



to top

>SOCS4_HUMAN (Q8WXH5) Suppressor of cytokine signaling 4 (SOCS-4) (Suppressor of|
           cytokine signaling 7) (SOCS-7)
          Length = 440

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 412 SPRTDLTFRNSSRK*TRSMHTHKRSWTHNFCFNTQRSGLGLSEDMT 275
           S + D  F  S R+ +RS+H     W HNF F+     +  S D+T
Sbjct: 313 SAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDIT 358



to top

>SOCS5_MOUSE (O54928) Cytokine-inducible SH2-containing protein 5 (Suppressor of|
           cytokine signaling 5) (SOCS-5)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 412 SPRTDLTFRNSSRK*TRSMHTHKRSWTHNFCFN 314
           S + D  F  S R+  RS+H     W HNF F+
Sbjct: 408 SAQEDYLFSVSFRRYNRSLHARIEQWNHNFSFD 440



to top

>SOCS5_HUMAN (O75159) Cytokine-inducible SH2-containing protein 5 (Suppressor of|
           cytokine signaling 5) (SOCS-5) (Cytokine-inducible SH2
           protein 6) (CIS-6)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 412 SPRTDLTFRNSSRK*TRSMHTHKRSWTHNFCFN 314
           S + D  F  S R+  RS+H     W HNF F+
Sbjct: 408 SAQEDYLFSVSFRRYNRSLHARIEQWNHNFSFD 440



to top

>MYLIP_MOUSE (Q8BM54) Ubiquitin ligase MYLIP (EC 6.3.2.-) (Myosin regulatory|
           light chain-interacting protein) (MIR)
          Length = 445

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 174 IKRCMLLRSCLLRIN*VVDCDYSILSTFCDCGLTVC 67
           +K  ML  +C         C+  I STFC CG TVC
Sbjct: 381 LKEAMLCMAC---------CEEEINSTFCPCGHTVC 407



to top

>MYLIP_HUMAN (Q8WY64) Ubiquitin ligase MYLIP (EC 6.3.2.-) (Myosin regulatory|
           light chain-interacting protein) (MIR)
          Length = 445

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 126 VVDCDYSILSTFCDCGLTVC 67
           +V C+  I STFC CG TVC
Sbjct: 388 MVCCEEEINSTFCPCGHTVC 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,711,301
Number of Sequences: 219361
Number of extensions: 1406048
Number of successful extensions: 3362
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3356
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top