ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1METZ_PSEAE (P55218) O-succinylhomoserine sulfhydrylase (EC 2.5.1... 34 0.13
2MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-meth... 33 0.28

>METZ_PSEAE (P55218) O-succinylhomoserine sulfhydrylase (EC 2.5.1.-) (OSH|
           sulfhydrylase)
          Length = 403

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -1

Query: 408 STSSEMDPEDRARAGISPGLIRMSVGYNGTLEQRWAQFERALALM 274
           ++   + PEDRARAGI   LIR++VG    L+   A   R LA +
Sbjct: 360 TSHGRLSPEDRARAGIGDSLIRVAVGLE-DLDDLKADMARGLAAL 403



to top

>MEGL_PSEPU (P13254) Methionine gamma-lyase (EC 4.4.1.11) (L-methioninase)|
          Length = 398

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -1

Query: 405 TSSEMDPEDRARAGISPGLIRMSVG 331
           T S   PE+RA  GIS GL+R+SVG
Sbjct: 355 THSSYTPEERAHYGISEGLVRLSVG 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,845,427
Number of Sequences: 219361
Number of extensions: 583825
Number of successful extensions: 1239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top