ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPX2_ARATH (O22711) Peroxiredoxin TPx2 (EC 1.11.1.15) (Thioredox... 40 0.001
2SPEG_BRARE (Q696W0) Striated muscle preferentially expressed pro... 30 1.0
3UNC30_CAEEL (P52906) Homeobox protein unc-30 (Uncoordinated prot... 30 1.4
4SOX30_MOUSE (Q8CGW4) Transcription factor SOX-30 30 1.4
5CJ095_HUMAN (Q9H7T3) Protein C10orf95 29 2.3
6PLSB_VIBPA (Q87KN0) Glycerol-3-phosphate acyltransferase (EC 2.3... 28 4.0
7STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Pro... 28 4.0
8PLSB_PHOLL (Q7MZB7) Glycerol-3-phosphate acyltransferase (EC 2.3... 28 5.2
9KLF4_MOUSE (Q60793) Krueppel-like factor 4 (Gut-enriched krueppe... 28 5.2
10CHLI_CHLRE (Q94FT3) Magnesium-chelatase subunit chlI, chloroplas... 28 5.2
11NAS32_CAEEL (O16977) Zinc metalloproteinase nas-32 precursor (EC... 28 6.8
12CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-gluta... 28 6.8
13GLTL2_HUMAN (Q8N3T1) Polypeptide N-acetylgalactosaminyltransfera... 28 6.8
14UL49_BHV1C (P30022) Tegument protein UL49 homolog 27 8.9
15H12_VOLCA (Q08865) Histone H1-II 27 8.9
16CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-gluta... 27 8.9

>TPX2_ARATH (O22711) Peroxiredoxin TPx2 (EC 1.11.1.15) (Thioredoxin reductase)|
          Length = 162

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = -1

Query: 407 YALLADDGVVKVLNLEEGGAFTNSSAEDMLKAL 309
           +ALL D+  V V N+E GG FT SSAED+LKAL
Sbjct: 130 FALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162



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>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1)
          Length = 2995

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -2

Query: 397  SPTTASSRCSTSRKAAPSPTAAPRTCSRRSEA*AATPLRPRHARRVIAIGSVRPL 233
            SP + ++  S  R  +P PT  P TCS      A TP+ P     VI + S+ P+
Sbjct: 2602 SPRSYTAPPSIGRSISPVPTYVPATCSL-----APTPVSP----SVIVVSSISPI 2647



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>UNC30_CAEEL (P52906) Homeobox protein unc-30 (Uncoordinated protein 30)|
          Length = 319

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -2

Query: 397 SPTTASSRCSTSRKAAPSPTA 335
           SPTTA+SR ST+   AP PTA
Sbjct: 257 SPTTATSRFSTAANLAPLPTA 277



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>SOX30_MOUSE (Q8CGW4) Transcription factor SOX-30|
          Length = 782

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 391 TTASSRCSTSRKAAPSPTAAPRTCSRRSEA*AATPLRPRHARRVIAIGSVRPLFPDEGLF 212
           +TA +R +TS    P   A+  TC R +    ATP+   H  +   +G    LF     F
Sbjct: 580 STAHARFATSPIQPPKEYASVSTCPRSTPIPPATPIPHSHVYQPPPLGHPATLFGTPPRF 639

Query: 211 CFVFP 197
            F  P
Sbjct: 640 SFHHP 644



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>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 406 TRCSPTTASSRCSTSRKAAPSPTAA-PRTC-SRRSEA*AATPLRPRHA 269
           T  SP+ A+S C   R+A  SPT A    C +  + A AA P +PR A
Sbjct: 202 TCASPSAAASSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKPRSA 249



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>PLSB_VIBPA (Q87KN0) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)|
          Length = 808

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +1

Query: 55  HGHDRFIVLQKLRKATLHYSVLATAHRGXXXXXXXXXPPLPHRLLLFREKRSKKGLHQET 234
           HG D  I  +  R A +H+S    A  G         P LP R +LF        + Q  
Sbjct: 180 HGTDSAIAHKLARVARIHFSRQKLAASG---------PNLPQRQVLFARLLKSPAIEQAI 230

Query: 235 EDE 243
           EDE
Sbjct: 231 EDE 233



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>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 394 PTTASSRCSTSRKAAPSPTAA-PRTCSRRSEA*AAT----PLRPRHARRVIAIGSV 242
           PTTA+S  STS  ++ +PT   P + S  S +   T    P +P H   V+A   +
Sbjct: 448 PTTATSSSSTSTTSSKTPTTTRPISSSSSSSSGIVTSSQRPTQPTHRTPVLATSGI 503



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>PLSB_PHOLL (Q7MZB7) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)|
          Length = 818

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 55  HGHDRFIVLQKLRKATLHYSVLATAHRGXXXXXXXXXPPLPHRLLLFREKRSKKGLHQET 234
           HG D+ I  +  R A +HYS    A  G         P LP R  LF +  + K + +  
Sbjct: 179 HGTDKTIAHKLARVARMHYSRQRLAAVG---------PRLPVRQELFNKLLASKAIEKAV 229

Query: 235 EDE 243
            DE
Sbjct: 230 SDE 232



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>KLF4_MOUSE (Q60793) Krueppel-like factor 4 (Gut-enriched krueppel-like factor)|
           (Epithelial zinc-finger protein EZF)
          Length = 474

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 391 TTASSRCSTSRKAAPSPTAAPRTCS 317
           TT++S  S+S  A+  P +AP TCS
Sbjct: 113 TTSASASSSSSPASSGPASAPSTCS 137



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>CHLI_CHLRE (Q94FT3) Magnesium-chelatase subunit chlI, chloroplast precursor|
           (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)
          Length = 417

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 382 SSRCSTSRKAAP---SPTAAPRTCSRRSEA*AATPLRPRHARRVIAIGSVRPLFP 227
           SS+ ++S + AP   +P AA R       A AAT ++    R    +G  RP+FP
Sbjct: 27  SSKVASSARVAPFQGAPVAAQRAALLVRAA-AATEVKAAEGRTGKELGQARPIFP 80



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>NAS32_CAEEL (O16977) Zinc metalloproteinase nas-32 precursor (EC 3.4.24.21)|
           (Nematode astacin 32)
          Length = 651

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 406 TRCSPTTASSRCSTSRKAAPSPTAAPRTCSRRSEA 302
           +R + TTA++  ST   +  +PT +PR    +SEA
Sbjct: 69  SRINSTTAATPTSTVTTSTSAPTTSPRVYKLKSEA 103



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>CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 387

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 397 SPTTASSRCSTSRKAAPSPTAAPRTCSRRSEA*AATPLRP-RHARRVIAIGS 245
           +PTTA +R   +R AAP+   AP   +  + A   T   P R A +++AIG+
Sbjct: 161 APTTAPARAVPTRTAAPA--TAPAAHAHHAPAHPTTSGTPKRKAYKLVAIGT 210



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>GLTL2_HUMAN (Q8N3T1) Polypeptide N-acetylgalactosaminyltransferase-like protein|
           2 (EC 2.4.1.41) (Protein-UDP
           acetylgalactosaminyltransferase-like protein 2)
           (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase-like protein 2)
           (Polypeptide GalNAc tra
          Length = 639

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 303 PEPRHPSALAM-PVESSPSARFVLCF 229
           PE RHP  L   P +S P+A  +LCF
Sbjct: 174 PEVRHPLCLQQHPQDSLPTASVILCF 199



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>UL49_BHV1C (P30022) Tegument protein UL49 homolog|
          Length = 258

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
 Frame = -2

Query: 406 TRCSPTTASSRCSTSRKAAPSPTAAP---------RTCSRRSEA*AATPLRPRHARRVIA 254
           T  +P  A +R S+SR ++  P AA          R  S  + A A  P RPR      A
Sbjct: 82  TVAAPAAAPARRSSSRASSRPPRAAADPPVLRPATRGSSGGAGAVAVGPPRPRAPPGANA 141

Query: 253 IGSVRPL 233
           + S RPL
Sbjct: 142 VASGRPL 148



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>H12_VOLCA (Q08865) Histone H1-II|
          Length = 240

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 364 SRKAAPSPTAAPRTCSRRSEA*AATPLRPRHARRVIAIGSVRP 236
           ++KA P   AAP+  +   +A AATP + + A    A  + +P
Sbjct: 178 AKKATPKKAAAPKKAAAPKKAKAATPKKAKAATPKKAKAAAKP 220



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>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 374

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 397 SPTTASSRCSTSRKAAPSPTAAPRTCSRRSEA*AATPLRPRHARRVIAIGS 245
           +P  ASS    S  A+P+P     T    + A + +P   R   +++AIG+
Sbjct: 147 APVPASSPAPASSFASPAPARPAATARAAAPAASHSPAPKRKPYKLVAIGT 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,358,781
Number of Sequences: 219361
Number of extensions: 789266
Number of successful extensions: 2843
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2839
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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