ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009091.1| Triticum aestivum clone wkm2c.pk0003.c3:fis, full... 260 3e-66
2ref|XM_464429.1| Oryza sativa (japonica cultivar-group), mRNA 170 2e-39
3ref|XM_506741.1| PREDICTED Oryza sativa (japonica cultivar-group... 170 2e-39
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
5dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
6dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
7dbj|AK065909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
8dbj|AK061629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
10dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
11dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
12dbj|AK104130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
13dbj|AK068955.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
14dbj|AK058459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 3e-32
15gb|AY106451.1| Zea mays PCO082226 mRNA sequence 147 3e-32
16ref|NM_184016.1| Oryza sativa (japonica cultivar-group), predic... 111 2e-21
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
18dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
19dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
20gb|AY796053.1| Saccharum officinarum putative thioredoxin peroxi... 72 2e-09
21gb|AC005748.10| Homo sapiens X BAC GS1-293I18 (Genome Systems Hu... 48 0.022
22ref|XM_482610.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.35
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
24dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
25dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
26dbj|AK068551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
27emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 42 1.4
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.4
29emb|AL359475.13| Human DNA sequence from clone RP11-121P10 on ch... 42 1.4
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.4
31emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster 42 1.4
32emb|AL731725.8| Mouse DNA sequence from clone RP23-146P19 on chr... 42 1.4
33ref|NM_189031.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
34ref|XM_482475.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.4
35gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.4
36gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.4
37gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.4
38gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 5.4
39gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.4
40ref|XM_503211.1| Yarrowia lipolytica CLIB122, YALI0D23925g predi... 40 5.4
41emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.4
42emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.4
43emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.4
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.4
45gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 5.4
46dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
47dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
48dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
49dbj|AK072791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
50dbj|AK069134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
51emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 i... 40 5.4
52gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.4
53gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 5.4
54gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.4
55gb|DQ222978.1| Hordeum vulgare temperature-induced lipocalin-2 (... 40 5.4
56emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 5.4
57emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chr... 40 5.4 
>gb|BT009091.1| Triticum aestivum clone wkm2c.pk0003.c3:fis, full insert mRNA
           sequence
          Length = 1123

 Score =  260 bits (131), Expect = 3e-66
 Identities = 224/250 (89%), Gaps = 15/250 (6%)
 Strand = Plus / Minus

                                                                       
Query: 166 ccgccgctgccgcaccgattattattatt---cagggaaaaacgaagcaaaaaa--ggcc 220
           |||||||||||||||||||||||||||||   |||| |||||| ||||||||||  ||||
Sbjct: 872 ccgccgctgccgcaccgattattattattattcagg-aaaaacaaagcaaaaaaaaggcc 814

                                                                       
Query: 221 ttcatcaggaaacagaggacgaaccgagccgatggcgatgactcgacg---ggcatggcg 277
           ||||   |||||||||||||||||||||||||   ||| |||||||||   | | |||||
Sbjct: 813 ttca---ggaaacagaggacgaaccgagccga---cgacgactcgacgatagccgtggcg 760

                                                                       
Query: 278 agggcggaggggtgtcgcggctcaggcctcagagcgccttgagcatgtcctcggcgctgc 337
           || ||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agagcggaggggggtcgcgattcaggcctcagagcgccttgagcatgtcctcggcgctgc 700

                                                                       
Query: 338 tgttggtgaaggcgccgccttcctcgaggttgagcaccttgacgacgccgtcgtcggcga 397
           ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct: 699 tgttggtgaaggcgccgccctcctcgaggttgagcaccttgaccacgccgtcgtcggcca 640

                     
Query: 398 gcagcgcgta 407
           ||||||||||
Sbjct: 639 gcagcgcgta 630



 Score =  188 bits (95), Expect = 1e-44
 Identities = 129/140 (92%), Gaps = 4/140 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    gcaaacaacaagcacaagttgacattccattccatgccaggttgcaaaccaggacacggc 60
            ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1032 gcaaacagcaagcaaaagttgacattccattccatgccaggttgcgaaccaggacacggc 973

                                                                        
Query: 61   cacgacagattcatagttctccagaaacttcgcaaagctacgctgcactactcagtactc 120
            ||||||    || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 972  cacgac----tcgtagttctccagaaacttcacaaagctacgctgcactactcagtactc 917

                                
Query: 121  gccaccgcacatcgaggtga 140
            |||||| |||||| ||||||
Sbjct: 916  gccacctcacatcaaggtga 897
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>ref|XM_464429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 912

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 731 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 672

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 671 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 630
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>ref|XM_506741.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453H10.33 mRNA
          Length = 994

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 729 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 670

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 669 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 628
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Plus

                                                                           
Query: 306     tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
               |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 5167260 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 5167319

                                                         
Query: 366     gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
               ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 5167320 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 5167361
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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0453H10
          Length = 133464

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Plus

                                                                          
Query: 306    tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
              |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 127758 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 127817

                                                        
Query: 366    gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
              ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127818 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 127859
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>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0437H03
          Length = 170173

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Plus

                                                                         
Query: 306   tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
             |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 60713 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 60772

                                                       
Query: 366   gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
             ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 60773 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 60814
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>dbj|AK065909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043E11, full
           insert sequence
          Length = 912

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 731 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 672

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 671 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 630
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>dbj|AK061629.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H06, full
           insert sequence
          Length = 994

 Score =  170 bits (86), Expect = 2e-39
 Identities = 98/102 (96%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 729 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 670

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 669 gttgagcaccttgacgacgccgtcgtcggcgaggagcgcgta 628
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                            
Query: 306      tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
                |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 24831194 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 24831135

                                                          
Query: 366      gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
                |||||||||||||||||||||||| || || || ||||||||
Sbjct: 24831134 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 24831093
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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0072A21
          Length = 158287

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                         
Query: 306   tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
             |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 42277 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 42218

                                                       
Query: 366   gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
             |||||||||||||||||||||||| || || || ||||||||
Sbjct: 42217 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 42176
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>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0029G06
          Length = 169711

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                          
Query: 306    tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
              |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 164875 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 164816

                                                        
Query: 366    gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
              |||||||||||||||||||||||| || || || ||||||||
Sbjct: 164815 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 164774
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>dbj|AK104130.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H07, full
           insert sequence
          Length = 1098

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 699 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 640

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           |||||||||||||||||||||||| || || || ||||||||
Sbjct: 639 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 598
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>dbj|AK068955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003C09, full
           insert sequence
          Length = 1140

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 795 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 736

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           |||||||||||||||||||||||| || || || ||||||||
Sbjct: 735 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 694
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>dbj|AK058459.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H12, full
           insert sequence
          Length = 1248

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 794 tcagagcgccttgagcatctcctcggcgctgctggtggtgaaggcgccgccctcctcgag 735

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           |||||||||||||||||||||||| || || || ||||||||
Sbjct: 734 gttgagcaccttgacgacgccgtcctccgccaggagcgcgta 693
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>gb|AY106451.1| Zea mays PCO082226 mRNA sequence
          Length = 1137

 Score =  147 bits (74), Expect = 3e-32
 Identities = 95/102 (93%)
 Strand = Plus / Minus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 788 tcagagcgcgttgagcatgtcctcggcgctgctgttggtgaacgcgccgccctcctcgag 729

                                                     
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||| ||||||||| |||||||| || ||||||||||||||
Sbjct: 728 gttgatcaccttgaccacgccgtcctccgcgagcagcgcgta 687
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>ref|NM_184016.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 456

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Plus

                                                                       
Query: 306 tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
           |||||||||||||||||| ||||||  ||||||| ||||||||||| ||||||||| |||
Sbjct: 184 tcagagcgccttgagcatctcctcgatgctgctggtggtgaaggcgacgccttccttgag 243

                                   
Query: 366 gttgagcaccttgacgacgccgtc 389
           ||||||||||||||| ||||||||
Sbjct: 244 gttgagcaccttgaccacgccgtc 267
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                            
Query: 306      tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
                |||||||||||||||||| ||||||  ||||||| ||||||||||| ||||||||| |||
Sbjct: 13899066 tcagagcgccttgagcatctcctcgatgctgctggtggtgaaggcgacgccttccttgag 13899007

                                        
Query: 366      gttgagcaccttgacgacgccgtc 389
                ||||||||||||||| ||||||||
Sbjct: 13899006 gttgagcaccttgaccacgccgtc 13898983
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1051E10
          Length = 207782

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                         
Query: 306   tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
             |||||||||||||||||| ||||||  ||||||| ||||||||||| ||||||||| |||
Sbjct: 59368 tcagagcgccttgagcatctcctcgatgctgctggtggtgaaggcgacgccttccttgag 59309

                                     
Query: 366   gttgagcaccttgacgacgccgtc 389
             ||||||||||||||| ||||||||
Sbjct: 59308 gttgagcaccttgaccacgccgtc 59285
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>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0440D10
          Length = 144340

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                          
Query: 306    tcagagcgccttgagcatgtcctcggcgctgctgttggtgaaggcgccgccttcctcgag 365
              |||||||||||||||||| ||||||  ||||||| ||||||||||| ||||||||| |||
Sbjct: 136469 tcagagcgccttgagcatctcctcgatgctgctggtggtgaaggcgacgccttccttgag 136410

                                      
Query: 366    gttgagcaccttgacgacgccgtc 389
              ||||||||||||||| ||||||||
Sbjct: 136409 gttgagcaccttgaccacgccgtc 136386
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>gb|AY796053.1| Saccharum officinarum putative thioredoxin peroxidase 1 mRNA,
           complete cds
          Length = 551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 352 ccgccttcctcgaggttgagcaccttgacgacgccgtcgtcggcgagcagcgcgta 407
           ||||| |||| |||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 263 ccgccgtccttgaggttaagcaccttgacgacgccgtcctcggccagcagcgcgta 208
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>gb|AC005748.10| Homo sapiens X BAC GS1-293I18 (Genome Systems Human BAC Library)
             complete sequence
          Length = 130615

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   aggccttcatcaggaaacagagga 239
             ||||||||||||||||||||||||
Sbjct: 11952 aggccttcatcaggaaacagagga 11929
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>ref|XM_482610.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 860

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagc 399
           |||||||||||| ||| |||||||| ||||||||
Sbjct: 244 gttgagcaccttcacggcgccgtcgccggcgagc 211
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 366      gttgagcaccttgacgacgccgtcgtcggcgagc 399
                |||||||||||| ||| |||||||| ||||||||
Sbjct: 21400494 gttgagcaccttcacggcgccgtcgccggcgagc 21400461



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 377      tgacgacgccgtcgtcggcgagca 400
                |||||| |||||||||||||||||
Sbjct: 25693041 tgacgatgccgtcgtcggcgagca 25693018



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 386      cgtcgtcggcgagcagcgcg 405
                ||||||||||||||||||||
Sbjct: 20401289 cgtcgtcggcgagcagcgcg 20401270
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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0528B09
          Length = 156897

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 366  gttgagcaccttgacgacgccgtcgtcggcgagc 399
            |||||||||||| ||| |||||||| ||||||||
Sbjct: 4489 gttgagcaccttcacggcgccgtcgccggcgagc 4456
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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0524F03
          Length = 167696

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 366    gttgagcaccttgacgacgccgtcgtcggcgagc 399
              |||||||||||| ||| |||||||| ||||||||
Sbjct: 100419 gttgagcaccttcacggcgccgtcgccggcgagc 100386
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>dbj|AK068551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155M04, full
           insert sequence
          Length = 860

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 366 gttgagcaccttgacgacgccgtcgtcggcgagc 399
           |||||||||||| ||| |||||||| ||||||||
Sbjct: 244 gttgagcaccttcacggcgccgtcgccggcgagc 211
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 357    ttcctcgaggttgagcaccttgacgacgccgtc 389
              |||||||| ||| ||| ||||||||||||||||
Sbjct: 135093 ttcctcgatgttcagcgccttgacgacgccgtc 135125
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 386     cgtcgtcggcgagcagcgcgt 406
               |||||||||||||||||||||
Sbjct: 2199271 cgtcgtcggcgagcagcgcgt 2199251
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>emb|AL359475.13| Human DNA sequence from clone RP11-121P10 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 44627

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 268   gggcatggcgagggcggaggggtgt 292
             ||||| |||||||||||||||||||
Sbjct: 14554 gggcagggcgagggcggaggggtgt 14530
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 382     acgccgtcgtcggcgagcagc 402
               |||||||||||||||||||||
Sbjct: 6641072 acgccgtcgtcggcgagcagc 6641092



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 386     cgtcgtcggcgagcagcgcg 405
               ||||||||||||||||||||
Sbjct: 8958814 cgtcgtcggcgagcagcgcg 8958833
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>emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster
          Length = 64650

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   gacgccgtcgtcggcgagcag 401
             |||||||||||||||||||||
Sbjct: 17803 gacgccgtcgtcggcgagcag 17823
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>emb|AL731725.8| Mouse DNA sequence from clone RP23-146P19 on chromosome X, complete
              sequence
          Length = 213743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    attattattattcagggaaaa 203
              |||||||||||||||||||||
Sbjct: 178964 attattattattcagggaaaa 178944
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>ref|NM_189031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 377  tgacgacgccgtcgtcggcgagca 400
            |||||| |||||||||||||||||
Sbjct: 1016 tgacgatgccgtcgtcggcgagca 1039
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>ref|XM_482475.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3182

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 cgtcgtcggcgagcagcgcg 405
           ||||||||||||||||||||
Sbjct: 311 cgtcgtcggcgagcagcgcg 292
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 307    cagagcgccttgagcatgtcctcggcgc 334
              |||||||||||||||  |||||||||||
Sbjct: 825606 cagagcgccttgagccggtcctcggcgc 825579
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 383     cgccgtcgtcggcgagcagcgcgt 406
               ||||| ||||||||||||||||||
Sbjct: 2040492 cgccgccgtcggcgagcagcgcgt 2040469
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 386     cgtcgtcggcgagcagcgcg 405
               ||||||||||||||||||||
Sbjct: 2486918 cgtcgtcggcgagcagcgcg 2486937
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     cgccgtcgtcggcgagcagc 402
               ||||||||||||||||||||
Sbjct: 1042463 cgccgtcgtcggcgagcagc 1042482
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 383     cgccgtcgtcggcgagcagcgcgt 406
               ||||| ||||||||||||||||||
Sbjct: 1392691 cgccgccgtcggcgagcagcgcgt 1392714
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>ref|XM_503211.1| Yarrowia lipolytica CLIB122, YALI0D23925g predicted mRNA
          Length = 2850

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 tggcgagggcggaggggtgt 292
           ||||||||||||||||||||
Sbjct: 307 tggcgagggcggaggggtgt 288
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     cgccgtcgtcggcgagcagc 402
               ||||||||||||||||||||
Sbjct: 2359991 cgccgtcgtcggcgagcagc 2360010
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 383     cgccgtcgtcggcgagcagcgcgt 406
               ||||| ||||||||||||||||||
Sbjct: 1264615 cgccgccgtcggcgagcagcgcgt 1264638
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gacgacgccgtcgtcggcga 397
              ||||||||||||||||||||
Sbjct: 266047 gacgacgccgtcgtcggcga 266028
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 379     acgacgccgtcgtcggcgag 398
               ||||||||||||||||||||
Sbjct: 3598756 acgacgccgtcgtcggcgag 3598775



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 386     cgtcgtcggcgagcagcgcg 405
               ||||||||||||||||||||
Sbjct: 2068513 cgtcgtcggcgagcagcgcg 2068494
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 383     cgccgtcgtcggcgagcagc 402
               ||||||||||||||||||||
Sbjct: 1908483 cgccgtcgtcggcgagcagc 1908502
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>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0056L09
          Length = 152910

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    cgtcgtcggcgagcagcgcg 405
              ||||||||||||||||||||
Sbjct: 149037 cgtcgtcggcgagcagcgcg 149018
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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0700D12
          Length = 145177

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 377   tgacgacgccgtcgtcggcgagca 400
             |||||| |||||||||||||||||
Sbjct: 70789 tgacgatgccgtcgtcggcgagca 70766
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>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0456B03
          Length = 152973

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   cgtcgtcggcgagcagcgcg 405
             ||||||||||||||||||||
Sbjct: 31919 cgtcgtcggcgagcagcgcg 31900
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>dbj|AK072791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141K11, full
           insert sequence
          Length = 1831

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 cgtcgtcggcgagcagcgcg 405
           ||||||||||||||||||||
Sbjct: 292 cgtcgtcggcgagcagcgcg 273
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>dbj|AK069134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007E19, full
           insert sequence
          Length = 3183

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 386 cgtcgtcggcgagcagcgcg 405
           ||||||||||||||||||||
Sbjct: 311 cgtcgtcggcgagcagcgcg 292
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>emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 in linkage group 20,
             complete sequence
          Length = 200617

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ggcggaggggtgtcgcggct 299
             ||||||||||||||||||||
Sbjct: 22663 ggcggaggggtgtcgcggct 22644
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 323    tgtcctcggcgctgctgttggtgaaggcgccg 354
              |||| |||||||||||||| |||||| |||||
Sbjct: 233275 tgtcgtcggcgctgctgttcgtgaagacgccg 233306
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   acgccgtcgtcggcgagcag 401
             ||||||||||||||||||||
Sbjct: 41890 acgccgtcgtcggcgagcag 41871
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     cttgacgacgccgtcgtcgg 394
               ||||||||||||||||||||
Sbjct: 1587549 cttgacgacgccgtcgtcgg 1587568
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>gb|DQ222978.1| Hordeum vulgare temperature-induced lipocalin-2 (TIL-2) mRNA,
           complete cds
          Length = 549

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 366 gttgagcaccttgacgacgccgtc 389
           |||||||||||||||| |||||||
Sbjct: 159 gttgagcaccttgacggcgccgtc 136
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     tggcgagggcggaggggtgt 292
               ||||||||||||||||||||
Sbjct: 3124229 tggcgagggcggaggggtgt 3124248
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>emb|AL805968.6| Mouse DNA sequence from clone RP23-424G19 on chromosome 4, complete
             sequence
          Length = 171320

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   gattattattattcagggaaaaac 205
             |||||||||||||||| |||||||
Sbjct: 34925 gattattattattcagagaaaaac 34902


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,399,786
Number of Sequences: 3902068
Number of extensions: 4399786
Number of successful extensions: 69820
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67847
Number of HSP's gapped (non-prelim): 1969
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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