ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 131 bits (66), Expect = 2e-27 Identities = 93/102 (91%) Strand = Plus / Minus Query: 299 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 358 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 1708 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 1649 Query: 359 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 1607
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 131 bits (66), Expect = 2e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 299 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 358 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 11976552 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 11976611 Query: 359 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 11976612 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 11976653 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 337 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 396 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 19370014 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 19369955 Query: 397 tgga 400 |||| Sbjct: 19369954 tgga 19369951
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 131 bits (66), Expect = 2e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 299 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 358 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 81032 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 81091 Query: 359 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 81092 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 81133
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 324 cttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgc 383 |||||||||||| |||||| |||| ||||| ||| |||||||||||| || ||||| Sbjct: 1750 cttgccgacgcggtcgatggcctcggcgaagatgacccccatgcccatgtggaggtgcgg 1691 Query: 384 ctcgatgtggcagtgga 400 ||||||||||||||||| Sbjct: 1690 ctcgatgtggcagtgga 1674
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 350 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 21606980 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtgga 21606930 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 319 gggagcttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaag 378 ||||||| || |||||| |||| | |||| ||||| |||||||||||||||| || | Sbjct: 21550130 gggagctcgctgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggagg 21550071 Query: 379 tgcgcctcgatgtggcagtgga 400 |||| ||||||||||||||||| Sbjct: 21550070 tgcggctcgatgtggcagtgga 21550049
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 350 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 164164 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtgga 164114 Score = 60.0 bits (30), Expect = 6e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 319 gggagcttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaag 378 ||||||| || |||||| |||| | |||| ||||| |||||||||||||||| || | Sbjct: 107314 gggagctcgctgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggagg 107255 Query: 379 tgcgcctcgatgtggcagtgga 400 |||| ||||||||||||||||| Sbjct: 107254 tgcggctcgatgtggcagtgga 107233
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 350 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 5911 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtgga 5861
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 350 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 ||||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct: 1859 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtgga 1809
>gb|BT009516.1| Triticum aestivum clone wr1.pk0100.d9:fis, full insert mRNA sequence Length = 491 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 328 ccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcg 387 |||||||| |||||| |||| ||||| ||| ||||| |||||| || ||||| |||| Sbjct: 124 ccgacgcggtcgatggcctcggcgaagatgacccccatccccatgtggaggtgcggctcg 65 Query: 388 atgtggcagtgga 400 ||||||||||||| Sbjct: 64 atgtggcagtgga 52
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 337 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 396 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 89240 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 89181 Query: 397 tgga 400 |||| Sbjct: 89180 tgga 89177
>gb|BT019237.1| Zea mays clone Contig910.F mRNA sequence Length = 1171 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 357 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtgga 400 |||||||||||||||| || ||||| |||||| |||||||||| Sbjct: 241 gacgcccatgcccatgtggaggtgcggctcgatatggcagtgga 284
>gb|AC128667.3| Mus musculus BAC clone RP24-160B11 from chromosome 17, complete sequence Length = 164685 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 117 ccaaaggaaaaatataaggaatta 140 |||||||||||||||||||||||| Sbjct: 47531 ccaaaggaaaaatataaggaatta 47508
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence Length = 2047 Score = 48.1 bits (24), Expect = 0.022 Identities = 54/64 (84%) Strand = Plus / Minus Query: 337 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 396 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 1788 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 1729 Query: 397 tgga 400 |||| Sbjct: 1728 tgga 1725
>gb|AC153018.4| Mus musculus BAC clone RP23-95J19 from chromosome 17, complete sequence Length = 223539 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 117 ccaaaggaaaaatataaggaatta 140 |||||||||||||||||||||||| Sbjct: 62082 ccaaaggaaaaatataaggaatta 62105
>emb|AL606590.3|OSJN00031 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052O21, complete sequence Length = 166475 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 99 ccttaggccctgtttgaaccaaaggaaaaa 128 ||||||||||| |||||| ||||||||||| Sbjct: 98940 ccttaggccctctttgaatcaaaggaaaaa 98911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 99 ccttaggccctgtttgaaccaaaggaaaaa 128 ||||||||||| |||||| ||||||||||| Sbjct: 7077749 ccttaggccctctttgaatcaaaggaaaaa 7077720
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 tccgggagcttgccgacgcgc 336 ||||||||||||||||||||| Sbjct: 2980441 tccgggagcttgccgacgcgc 2980421
>ref|XM_647158.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (126.t00015) partial mRNA Length = 1458 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 taatatcaaagataatgaaaa 83 ||||||||||||||||||||| Sbjct: 1116 taatatcaaagataatgaaaa 1136
>emb|AJ972409.1| Spiroplasma citri pBJS-O plasmid, complete sequence Length = 13374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 taatatcaaagataatgaaaa 83 ||||||||||||||||||||| Sbjct: 1695 taatatcaaagataatgaaaa 1715
>emb|BX248398.9| Human DNA sequence from clone RP6-137J22 on chromosome 1 Contains a novel gene, the gene for a novel protein similar to cyclophilin-LC (cyclophilin homolog overexpressed in liver cancer (chromosome 1 amplified sequence 2)) and a CpG island, complete sequence Length = 127263 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tgtgaagaatgaatgaaatta 208 ||||||||||||||||||||| Sbjct: 105289 tgtgaagaatgaatgaaatta 105309
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 aaaataaataattgaatgtga 192 ||||||||||||||||||||| Sbjct: 50524 aaaataaataattgaatgtga 50544
>emb|AL022240.8|HS328E19 Human DNA sequence from clone RP3-328E19 on chromosome 1q12-21.2 Contains the 5' end of a novel gene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a novel pseudogene, the 3' end of a novel gene and a CpG island, complete sequence Length = 97619 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tgtgaagaatgaatgaaatta 208 ||||||||||||||||||||| Sbjct: 42510 tgtgaagaatgaatgaaatta 42530
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence Length = 1857073 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 ccctgtttgaaccaaaggaaa 126 ||||||||||||||||||||| Sbjct: 1117556 ccctgtttgaaccaaaggaaa 1117536
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 atgtgaagaatgaatgaaatt 207 ||||||||||||||||||||| Sbjct: 53067 atgtgaagaatgaatgaaatt 53087
>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence Length = 163009 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 aataattgaatgtgaagaatg 198 ||||||||||||||||||||| Sbjct: 3897 aataattgaatgtgaagaatg 3917
>gb|AC018683.4|AC018683 Homo sapiens BAC clone RP11-423P14 from 4, complete sequence Length = 201907 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 aaggaaaaatataaggaatta 140 ||||||||||||||||||||| Sbjct: 30654 aaggaaaaatataaggaatta 30674
>emb|BX255944.7| Zebrafish DNA sequence from clone CH211-241L20, complete sequence Length = 169165 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 57 gtgttgtaatatcaaagataatgaa 81 |||||||||||||||| |||||||| Sbjct: 61734 gtgttgtaatatcaaaaataatgaa 61758
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 337 tcgatgccctcctcgaaggcg 357 ||||||||||||||||||||| Sbjct: 4136824 tcgatgccctcctcgaaggcg 4136804
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 aataattgaatgtgaagaatgaatgaaat 206 |||||||||||| ||||||||||||||| Sbjct: 190567 aataattgaatgaaaagaatgaatgaaat 190595
>emb|AJ297706.1|SCI297706 Spiroplasma citri soj gene (partial), ORF2, p89 gene and ORF4 (partial) Length = 4273 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 taatatcaaagataatgaaaa 83 ||||||||||||||||||||| Sbjct: 474 taatatcaaagataatgaaaa 494
>emb|AJ969074.1| Spiroplasma citri plasmid pSci6 Length = 35318 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 taatatcaaagataatgaaaa 83 ||||||||||||||||||||| Sbjct: 1585 taatatcaaagataatgaaaa 1565
>emb|AJ969070.1| Spiroplasma citri pSci2 plasmid Length = 14407 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 taatatcaaagataatgaaaa 83 ||||||||||||||||||||| Sbjct: 1086 taatatcaaagataatgaaaa 1106
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 9 atttgtacatacatgattaatagtccaac 37 |||||||||||| | |||||||||||||| Sbjct: 285998 atttgtacatacttaattaatagtccaac 285970
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ggagcttgccgacgcgctcga 340 ||||||||||||||||||||| Sbjct: 2536960 ggagcttgccgacgcgctcga 2536980
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 ccctgtttgaaccaaaggaaa 126 ||||||||||||||||||||| Sbjct: 491374 ccctgtttgaaccaaaggaaa 491354
>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007, complete sequence Length = 92741 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gaaaatgtgttgtaatatcaa 71 ||||||||||||||||||||| Sbjct: 53126 gaaaatgtgttgtaatatcaa 53146
>gb|AC164566.3| Mus musculus BAC clone RP23-94P17 from chromosome 16, complete sequence Length = 203314 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tatcaaagataatgaaaagga 86 ||||||||||||||||||||| Sbjct: 57818 tatcaaagataatgaaaagga 57798
>dbj|AB019438.1| Homo sapiens DNA for immunoglobulin heavy-chain variable region, complete sequence, 2 of 5 Length = 200000 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 9 atttgtacatacatgattaatagtccaac 37 |||||||||||| | |||||||||||||| Sbjct: 85998 atttgtacatacttaattaatagtccaac 85970
>gb|AC116728.12| Mus musculus chromosome 3, clone RP23-345H12, complete sequence Length = 192916 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tgtgttgtaatatcaaagat 75 |||||||||||||||||||| Sbjct: 153703 tgtgttgtaatatcaaagat 153684
>gb|AC018464.9| Homo sapiens BAC clone RP11-328M22 from 7, complete sequence Length = 155862 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 aaataaataattgaatgtga 192 |||||||||||||||||||| Sbjct: 114817 aaataaataattgaatgtga 114836
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gacgcgctcgatgccctcct 349 |||||||||||||||||||| Sbjct: 1371853 gacgcgctcgatgccctcct 1371872
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 aagaatgaatgaaattatgt 211 |||||||||||||||||||| Sbjct: 7286 aagaatgaatgaaattatgt 7267
>emb|AL136459.12| Human DNA sequence from clone RP5-888L3 on chromosome 1, complete sequence Length = 19838 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaaatataaggaattagagg 144 |||||||||||||||||||| Sbjct: 16199 aaaatataaggaattagagg 16180
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taatagtccaacaatttgct 45 |||||||||||||||||||| Sbjct: 774821 taatagtccaacaatttgct 774840
>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE Length = 136310 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 tttgaaccaaaggaaaaatataag 134 |||||||||||| ||||||||||| Sbjct: 73404 tttgaaccaaagaaaaaatataag 73381
>emb|BX005227.12| Zebrafish DNA sequence from clone CH211-286C23 in linkage group 21, complete sequence Length = 187709 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 aatgaatgaaattatgtgag 214 |||||||||||||||||||| Sbjct: 138253 aatgaatgaaattatgtgag 138234
>emb|BX649396.3| Zebrafish DNA sequence from clone DKEY-177E22 in linkage group 9, complete sequence Length = 46907 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 178 aataattgaatgtgaagaatgaatgaaa 205 |||||||||||| |||||||||||||| Sbjct: 29644 aataattgaatgaaaagaatgaatgaaa 29671
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tgtttgaaccaaaggaaaaa 128 |||||||||||||||||||| Sbjct: 99513 tgtttgaaccaaaggaaaaa 99494
>gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, region 87E-87E, BAC clone BACR05K08, complete sequence Length = 188967 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 aatattttctcgcacgtttt 259 |||||||||||||||||||| Sbjct: 183265 aatattttctcgcacgtttt 183246
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ttgccgacgcgctcgatgcc 344 |||||||||||||||||||| Sbjct: 2630709 ttgccgacgcgctcgatgcc 2630690
>gb|AC008360.3|AC008360 Drosophila melanogaster, chromosome 3R, region 87E-87F, BAC clone BACR06H18, complete sequence Length = 194672 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 aatattttctcgcacgtttt 259 |||||||||||||||||||| Sbjct: 64986 aatattttctcgcacgtttt 64967
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 tgtttgaaccaaaggaaaaatata 132 ||||||||||| |||||||||||| Sbjct: 15463389 tgtttgaaccataggaaaaatata 15463366
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ttaggccctgtttgaaccaaaggaaaaa 128 ||||||||| |||||| ||||||||||| Sbjct: 9373669 ttaggccctctttgaatcaaaggaaaaa 9373642
>gb|DQ017268.1| Bombyx mori densovirus 3 isolate VD1, complete genome Length = 6543 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atatcaaagataatgaaaaggata 88 |||| ||||||||||||||||||| Sbjct: 5377 atataaaagataatgaaaaggata 5354
>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence Length = 202218 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 taattatttgtacatacatg 23 |||||||||||||||||||| Sbjct: 86968 taattatttgtacatacatg 86987
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ttaggccctgtttgaaccaaaggaaaaa 128 ||||||||| |||||| ||||||||||| Sbjct: 43996 ttaggccctctttgaatcaaaggaaaaa 43969
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 ttaggccctgtttgaaccaaaggaaaaa 128 ||||||||| |||||| ||||||||||| Sbjct: 150263 ttaggccctctttgaatcaaaggaaaaa 150236
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aggaaaaatataaggaatta 140 |||||||||||||||||||| Sbjct: 1278086 aggaaaaatataaggaatta 1278105
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cgatgccctcctcgaaggcg 357 |||||||||||||||||||| Sbjct: 2260096 cgatgccctcctcgaaggcg 2260115
>emb|CR394535.19| Zebrafish DNA sequence from clone CH211-198P19 in linkage group 3, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgaaaataaataattgaatg 189 |||||||||||||||||||| Sbjct: 153555 cgaaaataaataattgaatg 153574
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ttgctgacgcagcgcgtgat 311 |||||||||||||||||||| Sbjct: 474993 ttgctgacgcagcgcgtgat 475012
>gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37 of 118 of the complete sequence Length = 208424 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 aatattttctcgcacgtttt 259 |||||||||||||||||||| Sbjct: 199851 aatattttctcgcacgtttt 199832
>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete sequence Length = 303191 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tgtttgaaccaaaggaaaaa 128 |||||||||||||||||||| Sbjct: 289334 tgtttgaaccaaaggaaaaa 289315
>dbj|AP006214.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-176I21, complete sequence Length = 62000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 taattatttgtacatacatg 23 |||||||||||||||||||| Sbjct: 56643 taattatttgtacatacatg 56624
>gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, region 62A10-62B5, P1 clones DS02777, DS03222, DS02345, and DS04808, complete sequence Length = 257867 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 tgtttgaaccaaaggaaaaa 128 |||||||||||||||||||| Sbjct: 212500 tgtttgaaccaaaggaaaaa 212481
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cgatgccctcctcgaaggcg 357 |||||||||||||||||||| Sbjct: 2172543 cgatgccctcctcgaaggcg 2172562
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 tgtttgaaccaaaggaaaaatata 132 ||||||||||| |||||||||||| Sbjct: 15417672 tgtttgaaccataggaaaaatata 15417649
>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126680 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 tgtttgaaccaaaggaaaaatata 132 ||||||||||| |||||||||||| Sbjct: 39098 tgtttgaaccataggaaaaatata 39121
>emb|AL844225.9| Mouse DNA sequence from clone RP23-119M24 on chromosome 2, complete sequence Length = 137220 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 taattatttgtacatacatg 23 |||||||||||||||||||| Sbjct: 19808 taattatttgtacatacatg 19827
>gb|DQ138935.1| Drosophila yakuba strain Tai18 CG12105 gene, partial cds Length = 4278 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 taatgaaaaggatatgagca 94 |||||||||||||||||||| Sbjct: 2019 taatgaaaaggatatgagca 2038
>dbj|AB033596.1| Parvo-like virus orf4, orf3, orf2, orf1 genes, complete cds Length = 6542 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atatcaaagataatgaaaaggata 88 |||| ||||||||||||||||||| Sbjct: 5376 atataaaagataatgaaaaggata 5353 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,218,265 Number of Sequences: 3902068 Number of extensions: 5218265 Number of successful extensions: 108018 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107239 Number of HSP's gapped (non-prelim): 779 length of query: 400 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 378 effective length of database: 17,147,199,772 effective search space: 6481641513816 effective search space used: 6481641513816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
