ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ELN_HUMAN (P15502) Elastin precursor (Tropoelastin) 30 3.0
2RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya... 29 6.7
3CEFF_STRCL (P42220) Deacetoxycephalosporin C hydroxylase (EC 1.1... 29 6.7

>ELN_HUMAN (P15502) Elastin precursor (Tropoelastin)|
          Length = 786

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = -3

Query: 406 PGLGVGAGEPHEGAEADE 353
           PGLGVGAG P  GA ADE
Sbjct: 598 PGLGVGAGVPGFGAGADE 615



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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = -3

Query: 415  AEPPGLGVGAGEPHEGAEADELHVQQ------DHHVGIRDGG 308
            A+  G G GAGE  EGA  +E+ VQ+      D  V + +GG
Sbjct: 4399 ADGEGAGEGAGEAWEGAGDEEVAVQEAGPGGADGAVAVAEGG 4440



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>CEFF_STRCL (P42220) Deacetoxycephalosporin C hydroxylase (EC 1.14.11.26)|
           (Deacetylcephalosporin C synthetase) (DACS) (Beta-lactam
           hydroxylase)
          Length = 317

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 22  PPHHRRKSRTGTELQNERQARAYNLRPIPSFTFGAASQDSNG 147
           P HH R    G    ++R +  + LRP   F+F  A   S G
Sbjct: 244 PRHHVRSPGAGMREGSDRTSSVFFLRPTTDFSFSVAKARSYG 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,697,591
Number of Sequences: 219361
Number of extensions: 792378
Number of successful extensions: 2060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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