ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472391.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1707 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Minus Query: 328 catgatggtcttgctggacgtggagctcgtcggcctcagcgccctcatggggctcgccag 387 |||||||| |||||||| | ||||||||||||||||||||| | ||| ||||||||||| Sbjct: 1116 catgatggatttgctggaggaggagctcgtcggcctcagcgctcgcatcgggctcgccag 1057 Query: 388 cgcccacgcccagccccggtggctccgcg 416 |||||||||||||| ||||||||| |||| Sbjct: 1056 cgcccacgcccagctccggtggctacgcg 1028
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence Length = 112404 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 328 catgatggtcttgctggacgtggagctcgtcggcctcagcgccctcatggggctcgccag 387 |||||||| |||||||| | ||||||||||||||||||||| | ||| ||||||||||| Sbjct: 99320 catgatggatttgctggaggaggagctcgtcggcctcagcgctcgcatcgggctcgccag 99379 Query: 388 cgcccacgcccagccccggtggctccgcg 416 |||||||||||||| ||||||||| |||| Sbjct: 99380 cgcccacgcccagctccggtggctacgcg 99408
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 328 catgatggtcttgctggacgtggagctcgtcggcctcagcgccctcatggggctcgccag 387 |||||||| |||||||| | ||||||||||||||||||||| | ||| ||||||||||| Sbjct: 20129415 catgatggatttgctggaggaggagctcgtcggcctcagcgctcgcatcgggctcgccag 20129474 Query: 388 cgcccacgcccagccccggtggctccgcg 416 |||||||||||||| ||||||||| |||| Sbjct: 20129475 cgcccacgcccagctccggtggctacgcg 20129503 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tcgtgctgccgccgctcccg 448 |||||||||||||||||||| Sbjct: 1526665 tcgtgctgccgccgctcccg 1526646
>dbj|AK063263.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A10, full insert sequence Length = 1090 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Minus Query: 328 catgatggtcttgctggacgtggagctcgtcggcctcagcgccctcatggggctcgccag 387 |||||||| |||||||| | ||||||||||||||||||||| | ||| ||||||||||| Sbjct: 829 catgatggatttgctggaggaggagctcgtcggcctcagcgctcgcatcgggctcgccag 770 Query: 388 cgcccacgcccagccccggtggctccgcg 416 |||||||||||||| ||||||||| |||| Sbjct: 769 cgcccacgcccagctccggtggctacgcg 741
>ref|XM_466046.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1338 Score = 89.7 bits (45), Expect = 8e-15 Identities = 65/71 (91%), Gaps = 3/71 (4%) Strand = Plus / Minus Query: 347 gtggagctcgtcggcctcagcgccctcatggggctcgccagcgc---ccacgcccagccc 403 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 1202 gtggagctcgtcggcctcagcgccctcatcgggctggccagcgccgtccacgcccagctc 1143 Query: 404 cggtggctccg 414 ||||||||||| Sbjct: 1142 cggtggctccg 1132
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 89.7 bits (45), Expect = 8e-15 Identities = 65/71 (91%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 347 gtggagctcgtcggcctcagcgccctcatggggctcgccagcgc---ccacgcccagccc 403 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 19291111 gtggagctcgtcggcctcagcgccctcatcgggctggccagcgccgtccacgcccagctc 19291170 Query: 404 cggtggctccg 414 ||||||||||| Sbjct: 19291171 cggtggctccg 19291181
>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0458B05 Length = 144917 Score = 89.7 bits (45), Expect = 8e-15 Identities = 65/71 (91%), Gaps = 3/71 (4%) Strand = Plus / Plus Query: 347 gtggagctcgtcggcctcagcgccctcatggggctcgccagcgc---ccacgcccagccc 403 ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| | Sbjct: 58909 gtggagctcgtcggcctcagcgccctcatcgggctggccagcgccgtccacgcccagctc 58968 Query: 404 cggtggctccg 414 ||||||||||| Sbjct: 58969 cggtggctccg 58979
>gb|AY109229.1| Zea mays PCO125289 mRNA sequence Length = 398 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 328 catgatggtcttgctggacgtggagctcgtcggcctcagcgccc 371 ||||||| |||||||||||| |||||| |||||||| ||||||| Sbjct: 51 catgatgctcttgctggacgaggagctggtcggcctgagcgccc 8
>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05, complete sequence Length = 107407 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 gtgctgccgccgctcccgccgc 452 |||||||||||||||||||||| Sbjct: 60614 gtgctgccgccgctcccgccgc 60593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 431 gtgctgccgccgctcccgccgc 452 |||||||||||||||||||||| Sbjct: 20327024 gtgctgccgccgctcccgccgc 20327003
>ref|NM_001031016.1| Gallus gallus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 (B4GALT6), mRNA Length = 4819 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 gccgctcccgccgctgggcgc 459 ||||||||||||||||||||| Sbjct: 29 gccgctcccgccgctgggcgc 9
>ref|XM_618492.2| PREDICTED: Bos taurus similar to triple functional domain (PTPRF interacting) (LOC538292), mRNA Length = 9320 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 432 tgctgccgccgctcccgccgctggg 456 |||||||||||| |||||||||||| Sbjct: 6652 tgctgccgccgcccccgccgctggg 6628
>emb|AL451046.8| Human DNA sequence from clone RP11-174C7 on chromosome 6 Contains a ubiquitin-like 1 (sentrin) (UBL1) pseudogene, a novel pseudogene, a pyridoxal (pyridoxine, vitamin B6) kinase (PDXK) pseudogene and a novel gene, complete sequence Length = 105692 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 caacataaaacatctctattt 21 ||||||||||||||||||||| Sbjct: 86816 caacataaaacatctctattt 86796
>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence Length = 212485 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 actcgaatggacataccagaa 157 ||||||||||||||||||||| Sbjct: 10815 actcgaatggacataccagaa 10835
>emb|AJ851705.1| Gallus gallus mRNA for hypothetical protein, clone 19h3 Length = 4819 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 gccgctcccgccgctgggcgc 459 ||||||||||||||||||||| Sbjct: 29 gccgctcccgccgctgggcgc 9
>gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 map 7, complete sequence Length = 223438 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 actcgaatggacataccagaa 157 ||||||||||||||||||||| Sbjct: 189432 actcgaatggacataccagaa 189452
>ref|NM_208279.1| Eremothecium gossypii ABL021Cp (ABL021C), mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 428 ctcgtgctgccgccgctcccgccgc 452 ||||||| ||||||||||||||||| Sbjct: 696 ctcgtgcagccgccgctcccgccgc 672
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 428 ctcgtgctgccgccgctcccgccgc 452 ||||||| ||||||||||||||||| Sbjct: 358299 ctcgtgcagccgccgctcccgccgc 358323
>emb|AL591854.18| Mouse DNA sequence from clone RP23-105M23 on chromosome 2, complete sequence Length = 187181 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 ccaccacaccacaggagaaaa 42 ||||||||||||||||||||| Sbjct: 122831 ccaccacaccacaggagaaaa 122811
>gb|AC152104.2| Ostreococcus sp. CCE9901 clone JGIACFB-9A2, complete sequence Length = 37168 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gctggacgtggagctcgtcg 359 |||||||||||||||||||| Sbjct: 12799 gctggacgtggagctcgtcg 12818
>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence Length = 235930 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aatggacataccagaaccaa 161 |||||||||||||||||||| Sbjct: 95339 aatggacataccagaaccaa 95320
>gb|AC159545.18| Mus musculus 6 BAC RP23-244E8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 172372 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aacataaaacatctctattt 21 |||||||||||||||||||| Sbjct: 88528 aacataaaacatctctattt 88547
>ref|XM_746758.1| Aspergillus fumigatus Af293 60S ribosomal protein L7/L12 precursor (Afu4g09750) partial mRNA Length = 564 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 gtgctgccgccgctcccgccgctg 454 ||||||| |||||||||||||||| Sbjct: 290 gtgctgctgccgctcccgccgctg 313
>gb|DQ136809.1| HIV-1 clone AFG15 from France envelope glycoprotein (env) gene, partial cds Length = 705 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 ctagtagtagacgcagtagtagta 205 ||||||||||||| |||||||||| Sbjct: 92 ctagtagtagacggagtagtagta 69
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tcgtgctgccgccgctcccg 448 |||||||||||||||||||| Sbjct: 2326432 tcgtgctgccgccgctcccg 2326413
>emb|AL606689.4|OSJN00078 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042N22, complete sequence Length = 152676 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 tcgtgctgccgccgctcccg 448 |||||||||||||||||||| Sbjct: 46831 tcgtgctgccgccgctcccg 46812
>emb|AJ006776.1|HSA6776 Homo sapiens mRNA for translation initiation factor 2 (IF2 gene) Length = 4169 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 45 ccctcgtgctgccgccgctc 26
>gb|AC073544.4| Homo sapiens chromosome 19 clone RP11-359H18, complete sequence Length = 177299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 caccacaccacaggagaaaa 42 |||||||||||||||||||| Sbjct: 107964 caccacaccacaggagaaaa 107945
>gb|AC023713.4| Drosophila melanogaster X BAC RP98-24A2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181178 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gctgccgccgctcccgccgc 452 |||||||||||||||||||| Sbjct: 48448 gctgccgccgctcccgccgc 48467
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 tgctgccgccgctcccgccgctgg 455 ||||||||||||| |||||||||| Sbjct: 2073643 tgctgccgccgctgccgccgctgg 2073620
>ref|NM_132206.1| Drosophila melanogaster Upf2 CG2253-RA (Upf2), mRNA Length = 4046 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gctgccgccgctcccgccgc 452 |||||||||||||||||||| Sbjct: 3374 gctgccgccgctcccgccgc 3393
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 aactcgtcgccaccgtcgcg 319 |||||||||||||||||||| Sbjct: 3555263 aactcgtcgccaccgtcgcg 3555244
>gb|AC079447.4| Homo sapiens BAC clone RP11-111H13 from 2, complete sequence Length = 175567 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 140832 ccctcgtgctgccgccgctc 140813
>gb|BT024221.1| Drosophila melanogaster RE04053 full insert cDNA Length = 5070 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gctgccgccgctcccgccgc 452 |||||||||||||||||||| Sbjct: 3341 gctgccgccgctcccgccgc 3360
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gctgccgccgctcccgccgc 452 |||||||||||||||||||| Sbjct: 4591358 gctgccgccgctcccgccgc 4591377
>gb|AC138126.1| Homo sapiens chromosome 19 clone RP11-274A19, complete sequence Length = 169063 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 caccacaccacaggagaaaa 42 |||||||||||||||||||| Sbjct: 24358 caccacaccacaggagaaaa 24339
>dbj|AB018284.1| Homo sapiens mRNA for KIAA0741 protein, partial cds Length = 4177 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 54 ccctcgtgctgccgccgctc 35
>emb|AJ334451.1|HSA334451 Homo sapiens genomic sequence surrounding NotI site, clone NL1-CH17R Length = 683 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 167 ccctcgtgctgccgccgctc 186
>emb|AJ335019.1|HSA335019 Homo sapiens genomic sequence surrounding NotI site, clone NL1-VD23C Length = 631 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 167 ccctcgtgctgccgccgctc 186
>emb|BX927361.31| Zebrafish DNA sequence from clone CH211-121K8 in linkage group 9, complete sequence Length = 177986 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 actagtagtagacgcagtag 200 |||||||||||||||||||| Sbjct: 164742 actagtagtagacgcagtag 164761
>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete sequence Length = 316794 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 gctgccgccgctcccgccgc 452 |||||||||||||||||||| Sbjct: 272507 gctgccgccgctcccgccgc 272488
>ref|NM_015904.3| Homo sapiens eukaryotic translation initiation factor 5B (EIF5B), mRNA Length = 4698 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 ccctcgtgctgccgccgctc 445 |||||||||||||||||||| Sbjct: 88 ccctcgtgctgccgccgctc 69
>gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosome ul, complete sequence Length = 116265 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gaattacaaaatgaaaggca 77 |||||||||||||||||||| Sbjct: 106904 gaattacaaaatgaaaggca 106885
>gb|AC153381.2| Mus musculus 6 BAC RP23-397L23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196902 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aacataaaacatctctattt 21 |||||||||||||||||||| Sbjct: 32569 aacataaaacatctctattt 32550
>emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chromosome 4, complete sequence Length = 201226 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tcttgctggacgtggagctc 355 |||||||||||||||||||| Sbjct: 43381 tcttgctggacgtggagctc 43362 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,239,159 Number of Sequences: 3902068 Number of extensions: 4239159 Number of successful extensions: 93244 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92743 Number of HSP's gapped (non-prelim): 498 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
