ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLS_CITUN (Q9ZWQ9) Flavonol synthase/flavanone 3-hydroxylase (EC... 33 0.38
2FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC... 29 5.5
3PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase ... 28 7.2
4PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase ... 28 7.2
5GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ... 28 9.4

>FLS_CITUN (Q9ZWQ9) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS) (CitFLS)
          Length = 335

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 427 NAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDY 296
           N +K R+S  +      +T + P+ +LVDD+ P +Y   K  DY
Sbjct: 282 NKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 325



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>FLS_EUSGR (Q9M547) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23)|
           (EC 1.14.11.9) (FLS)
          Length = 334

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 427 NAEKERLSLVLVYTLELETQLEPVSELVDDKRPARYMKIKLNDY 296
           N EK R+S  +      + ++ P+ +LV+++ PA++   K  DY
Sbjct: 281 NKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDY 324



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>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1439

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259



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>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1457

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258



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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
 Frame = -3

Query: 323 IHEDQAQRLHGKIP*HLCHWDTSHRRREDLNMIPMYASSLSKIYGE-------------V 183
           +H   ++ +HG+    +CHW    R         M    + +  GE              
Sbjct: 253 VHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSY 312

Query: 182 SSVDQFVTSLRFYLFPR-FLCVYSSC-KMLGSLCGRIKP*YKTYPMWATYGCK--GSNKT 15
           S ++   T LR +   + ++C +  C K   +   R K   +T+     Y CK  G  K 
Sbjct: 313 SRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKR 372

Query: 14  Y 12
           Y
Sbjct: 373 Y 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,414,921
Number of Sequences: 219361
Number of extensions: 1267521
Number of successful extensions: 3448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3446
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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