Clone Information

BLAST Search Result

Clone Name	rbart48g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|X56782.1\|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine z...	317	2e-83
2	dbj\|AK073601.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	180	3e-42
3	dbj\|AB037151.1\| Oryza sativa (japonica cultivar-group) OsRPN10 m...	180	3e-42
4	dbj\|AB010740.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	180	3e-42
5	gb\|BT018579.1\| Zea mays clone EL01N0445E02.d mRNA sequence	137	4e-29
6	gb\|AY103564.1\| Zea mays PCO151364 mRNA sequence	129	9e-27
7	gb\|BT017153.1\| Zea mays clone EL01N0367E07.c mRNA sequence	117	3e-23
8	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	111	2e-21
9	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
10	gb\|AC134239.2\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
11	gb\|AC148217.15\| Medicago truncatula clone mth2-20c19, complete s...	56	1e-04
12	gb\|AC121233.16\| Medicago truncatula clone mth2-14g13, complete s...	56	1e-04
13	emb\|CT025157.6\| Mouse DNA sequence from clone RP23-292D13 on chr...	44	0.39
14	gb\|AC154315.2\| Mus musculus BAC clone RP23-348I6 from chromosome...	44	0.39
15	emb\|AL357514.19\| Human DNA sequence from clone RP1-105O18 on chr...	42	1.6
16	emb\|AL021068.2\|HS206D15 Human DNA sequence from clone RP1-206D15...	42	1.6
17	emb\|AL390218.1\|NCB7N4 Neurospora crassa DNA linkage group II BAC...	42	1.6
18	emb\|AL731688.14\| Mouse DNA sequence from clone RP23-291K6 on chr...	42	1.6
19	gb\|AF326737.2\| Mus musculus sclerostin (Sost) gene, complete cds...	42	1.6
20	gb\|AC068807.21\| Mus musculus 11 BAC RP23-346P7 (Roswell Park Can...	42	1.6
21	emb\|AL591436.8\| Mouse DNA sequence from clone RP23-434F13 on chr...	42	1.6
22	gb\|AE013022.1\| Thermoanaerobacter tengcongensis MB4, section 49 ...	40	6.1
23	gb\|AE013013.1\| Thermoanaerobacter tengcongensis MB4, section 40 ...	40	6.1
24	gb\|AC113510.9\| Mus musculus chromosome 5, clone RP23-378O9, comp...	40	6.1
25	gb\|AE013205.1\| Thermoanaerobacter tengcongensis MB4, section 232...	40	6.1
26	gb\|AE013097.1\| Thermoanaerobacter tengcongensis MB4, section 124...	40	6.1
27	gb\|AE013053.1\| Thermoanaerobacter tengcongensis MB4, section 80 ...	40	6.1
28	gb\|AC121302.7\| Mus musculus chromosome 13, clone RP23-163B12, co...	40	6.1
29	gb\|AY368907.1\| Lycopersicon esculentum molecular chaperone Hsp90...	40	6.1
30	gb\|AY368906.1\| Lycopersicon esculentum molecular chaperone Hsp90...	40	6.1
31	gb\|AY368904.1\| Nicotiana benthamiana molecular chaperone Hsp90-1...	40	6.1
32	gb\|AC131762.2\| Mus musculus BAC clone RP24-228J18 from chromosom...	40	6.1
33	gb\|AC122489.3\| Mus musculus BAC clone RP24-386H10 from chromosom...	40	6.1
34	gb\|AY310789.1\| Nicotiana benthamiana clone 10-186 unknown mRNA	40	6.1
35	gb\|AY310781.1\| Nicotiana benthamiana clone 9-037 unknown mRNA	40	6.1
36	gb\|BC001208.1\| Homo sapiens hypothetical protein LOC63929, mRNA ...	40	6.1
37	emb\|AL163206.2\|HS21C006 Homo sapiens chromosome 21 segment HS21C006	40	6.1
38	gb\|AC161582.4\| Monodelphis domestica, clone XX-27C10, complete s...	40	6.1
39	emb\|AL591845.27\| Human DNA sequence from clone RP11-268J15 on ch...	40	6.1
40	gb\|CP000300.1\| Methanococcoides burtonii DSM 6242, complete genome	40	6.1
41	emb\|AL353684.8\| Human DNA sequence from clone RP11-275A14 on chr...	40	6.1
42	emb\|AL031675.4\|HS751L1 Human DNA sequence from clone RP4-751L1 o...	40	6.1
43	emb\|AL009178.4\|HS431P23 Human DNA sequence from clone RP3-431P23...	40	6.1
44	emb\|CR339060.11\| Zebrafish DNA sequence from clone DKEY-276H21 i...	40	6.1
45	gb\|BC008189.1\| Mus musculus, clone IMAGE:3584589, mRNA, partial cds	40	6.1
46	gb\|AC161408.4\| Mus musculus chromosome 1, clone RP24-329G10, com...	40	6.1
47	emb\|BX571730.9\| Zebrafish DNA sequence from clone DKEY-35I22 in ...	40	6.1
48	gb\|AC016229.10\| Homo sapiens chromosome 18, clone RP11-27G24, co...	40	6.1
49	dbj\|AK148842.1\| Mus musculus 2 days neonate sympathetic ganglion...	40	6.1
50	ref\|XM_689365.1\| PREDICTED: Danio rerio similar to [Carassius au...	40	6.1
51	gb\|AC104195.10\| Mus musculus chromosome 5, clone RP24-95O4, comp...	40	6.1
52	gb\|AC008944.7\| Homo sapiens chromosome 5 clone CTD-2323D3, compl...	40	6.1
53	gb\|AC079954.18\| Homo sapiens 12 BAC RP11-179A1 (Roswell Park Can...	40	6.1
54	gb\|AF130358.2\|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5,...	40	6.1
55	emb\|BX005158.8\| Zebrafish DNA sequence from clone DKEY-222N6 in ...	40	6.1
56	dbj\|BS000009.1\| Pan troglodytes chromosome 22 clone:PTB-118J15, ...	40	6.1
57	emb\|AL844200.3\| Human DNA sequence from clone RP11-552P19 on chr...	40	6.1
58	gb\|AF130249.1\|AF130249 Homo sapiens PAC 126N20 derived from chro...	40	6.1
59	gb\|AC006924.3\|AC006924 Homo sapiens, clone hRPK.32_A_1, complete...	40	6.1
60	emb\|CT485606.7\| Mouse DNA sequence from clone RP24-246F10 on chr...	40	6.1
61	emb\|CT009764.9\| Mouse DNA sequence from clone RP23-173E21 on chr...	40	6.1
62	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	6.1
63	gb\|M96549.1\|TOMHSC80P Tomato heat shock cognate protein 80 gene,...	40	6.1
64	emb\|AL928689.7\| Mouse DNA sequence from clone RP23-35P3 on chrom...	40	6.1
65	gb\|DQ252488.1\| Solanum tuberosum clone 054G03 Hsp90-2-like mRNA,...	40	6.1
66	dbj\|AB016897.1\| Homo sapiens genomic DNA, chromosome 6q27, compl...	40	6.1

>emb|X56782.1|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type transcription
            factor)
          Length = 2204

 Score =  317 bits (160), Expect = 2e-83
 Identities = 204/219 (93%), Gaps = 6/219 (2%)
 Strand = Plus / Minus

                                                                        
Query: 244  agttcttcccatcttcaggcttgtctgtcttgtccgcctcatctttcttctcctc----- 298
            ||||||||||||||||||   |||||| ||||||| ||| |||||||||||||||     
Sbjct: 1949 agttcttcccatcttcagaaatgtctggcttgtcctccttatctttcttctcctcctgct 1890

                                                                        
Query: 299  -tccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacac 357
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 ctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacac 1830

                                                                        
Query: 358  caggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatat 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 caggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatat 1770

                                                   
Query: 418  cagattgaccagacgcctctgcgtcctgaacagacattt 456
            |||||||||||| |||||| |||||||| ||||||||||
Sbjct: 1769 cagattgaccagccgcctcagcgtcctggacagacattt 1731



 Score =  232 bits (117), Expect = 8e-58
 Identities = 185/204 (90%), Gaps = 9/204 (4%)
 Strand = Plus / Minus

                                                                        
Query: 14   tttcaccttcaacaaacataa-gtgtacaaaa-aatttgcaacatgtaatcacttaagac 71
            |||||||||||||| |||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 2191 tttcaccttcaacagacataaagtgtacaaatgaatttgcaacatgtaatcacttaagac 2132

                                                                        
Query: 72   aaacatggaggagcgttcgtgagagcagacataatacaaattctcttggcatttgagtta 131
            ||||||| |||||| |||||||||||||||||||||||| |||||| |||     |||||
Sbjct: 2131 aaacatgaaggagcattcgtgagagcagacataatacaagttctctcggc-----agtta 2077

                                                                        
Query: 132  tcgtcaacgcagttacaagaggatcaagtaaattcat--agcccaagtgtaaaagcagct 189
            || ||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||
Sbjct: 2076 tcatcaacgcagttacaagaggattaagtaaattcatagagcccgagtgtaaaagcagct 2017

                                    
Query: 190  aatgcaggcaatcttcttcccttc 213
            ||||||||||||||||||| ||||
Sbjct: 2016 aatgcaggcaatcttcttcacttc 1993

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>dbj|AK073601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046D23, full
            insert sequence
          Length = 1899

 Score =  180 bits (91), Expect = 3e-42
 Identities = 136/151 (90%)
 Strand = Plus / Minus

                                                                        
Query: 306  ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccaggaagc 365
            |||||||| |||||||| | |||||||||||| ||||||||||||||||||||||| || 
Sbjct: 1219 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagggaga 1160

                                                                        
Query: 366  gaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattga 425
            || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 1159 gagttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactga 1100

                                           
Query: 426  ccagacgcctctgcgtcctgaacagacattt 456
            | |||| |  |||||||||| ||||||||||
Sbjct: 1099 ctagacccgcctgcgtcctggacagacattt 1069

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>dbj|AB037151.1| Oryza sativa (japonica cultivar-group) OsRPN10 mRNA for 26S
            proteasome regulatory particle non-ATPase subunit10,
            complete cds
          Length = 1536

 Score =  180 bits (91), Expect = 3e-42
 Identities = 136/151 (90%)
 Strand = Plus / Minus

                                                                        
Query: 306  ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccaggaagc 365
            |||||||| |||||||| | |||||||||||| ||||||||||||||||||||||| || 
Sbjct: 1218 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagggaga 1159

                                                                        
Query: 366  gaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattga 425
            || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 1158 gagttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactga 1099

                                           
Query: 426  ccagacgcctctgcgtcctgaacagacattt 456
            | |||| |  |||||||||| ||||||||||
Sbjct: 1098 ctagacccgcctgcgtcctggacagacattt 1068

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>dbj|AB010740.1| Oryza sativa (japonica cultivar-group) mRNA for OsS5a, complete cds
          Length = 1508

 Score =  180 bits (91), Expect = 3e-42
 Identities = 136/151 (90%)
 Strand = Plus / Minus

                                                                        
Query: 306  ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccaggaagc 365
            |||||||| |||||||| | |||||||||||| ||||||||||||||||||||||| || 
Sbjct: 1218 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagggaga 1159

                                                                        
Query: 366  gaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattga 425
            || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 1158 gagttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactga 1099

                                           
Query: 426  ccagacgcctctgcgtcctgaacagacattt 456
            | |||| |  |||||||||| ||||||||||
Sbjct: 1098 ctagacccgcctgcgtcctggacagacattt 1068

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>gb|BT018579.1| Zea mays clone EL01N0445E02.d mRNA sequence
          Length = 1650

 Score =  137 bits (69), Expect = 4e-29
 Identities = 111/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 296  ctctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaac 355
            |||||| ||||  ||||| |||||||| | |||||| |||||||| |||||||| |||||
Sbjct: 1257 ctctccctggctgtgcaatgatgccagcaaatctttaacagatggatcattgggatcaac 1198

                                                                        
Query: 356  accaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcat 415
            ||||||||||||||||||||| |||| |||||||| ||||||||||||||| || |||||
Sbjct: 1197 accaggaagcgaattaaggatagatgacacaaatgttctgtcttcaaacaccttactcat 1138

                 
Query: 416  atcag 420
            |||||
Sbjct: 1137 atcag 1133

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>gb|AY103564.1| Zea mays PCO151364 mRNA sequence
          Length = 1318

 Score =  129 bits (65), Expect = 9e-27
 Identities = 110/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 296  ctctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaac 355
            |||||| ||||  ||||| |||||||| | |||||| |||||||| |||||||| |||||
Sbjct: 1263 ctctccctggctgtgcaatgatgccagcaaatctttaacagatggatcattgggatcaac 1204

                                                                        
Query: 356  accaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctcat 415
            ||||||||||||||||||||| |||| |||||| | ||||||||||||||| || |||||
Sbjct: 1203 accaggaagcgaattaaggatagatgacacaaacgttctgtcttcaaacaccttactcat 1144

                 
Query: 416  atcag 420
            |||||
Sbjct: 1143 atcag 1139

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>gb|BT017153.1| Zea mays clone EL01N0367E07.c mRNA sequence
          Length = 1189

 Score =  117 bits (59), Expect = 3e-23
 Identities = 110/127 (86%)
 Strand = Plus / Minus

                                                                       
Query: 294 tcctctccttggccatgcaaagatgccagtagatctttcacagatgggtcattggggtca 353
           |||||||| ||||  ||||| |||||||  | |||||| | |||||| |||||||| |||
Sbjct: 990 tcctctccctggctgtgcaatgatgccaacaaatctttaatagatggatcattgggatca 931

                                                                       
Query: 354 acaccaggaagcgaattaaggatggatgtcacaaatgatctgtcttcaaacactttgctc 413
           ||||||||||||||||||||||| |||| |||||| | ||||||||||||||| || |||
Sbjct: 930 acaccaggaagcgaattaaggatagatgacacaaacgttctgtcttcaaacaccttactc 871

                  
Query: 414 atatcag 420
           |||||||
Sbjct: 870 atatcag 864

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  111 bits (56), Expect = 2e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                           
Query: 369     ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 428
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 7550462 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 7550521

                                           
Query: 429     gacgcctctgcgtcctgaacagacattt 456
               ||| |  |||||||||| ||||||||||
Sbjct: 7550522 gacccgcctgcgtcctggacagacattt 7550549



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 306     ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 361
               |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 7550306 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 7550361

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  111 bits (56), Expect = 2e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                           
Query: 369     ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 428
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 7548297 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 7548356

                                           
Query: 429     gacgcctctgcgtcctgaacagacattt 456
               ||| |  |||||||||| ||||||||||
Sbjct: 7548357 gacccgcctgcgtcctggacagacattt 7548384



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 306     ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 361
               |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 7548141 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 7548196

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>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0042A11, complete sequence
          Length = 113049

 Score =  111 bits (56), Expect = 2e-21
 Identities = 80/88 (90%)
 Strand = Plus / Plus

                                                                         
Query: 369   ttaaggatggatgtcacaaatgatctgtcttcaaacactttgctcatatcagattgacca 428
             |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct: 79358 ttaaggatggatgtaacaaatgatctgtcttcaaacaccttgctcatatcagactgacta 79417

                                         
Query: 429   gacgcctctgcgtcctgaacagacattt 456
             ||| |  |||||||||| ||||||||||
Sbjct: 79418 gacccgcctgcgtcctggacagacattt 79445



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 306   ccatgcaaagatgccagtagatctttcacagatgggtcattggggtcaacaccagg 361
             |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 79202 ccatgcaatgatgccagcaaatctttcacagaggggtcattggggtcaacaccagg 79257

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>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence
          Length = 113210

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 326   atctttcacagatgggtcattggggtcaacaccaggaagc 365
             |||||| |||||||||||||| |||||||| |||||||||
Sbjct: 89777 atctttgacagatgggtcatttgggtcaaccccaggaagc 89816

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>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence
          Length = 129617

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 326   atctttcacagatgggtcattggggtcaacaccaggaagc 365
             |||||| |||||||||||||| |||||||| |||||||||
Sbjct: 22550 atctttgacagatgggtcatttgggtcaaccccaggaagc 22589

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>emb|CT025157.6| Mouse DNA sequence from clone RP23-292D13 on chromosome 14, complete
              sequence
          Length = 179561

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     cagtttcaccttcaacaaacat 32
              ||||||||||||||||||||||
Sbjct: 147100 cagtttcaccttcaacaaacat 147121

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>gb|AC154315.2| Mus musculus BAC clone RP23-348I6 from chromosome 14, complete sequence
          Length = 187052

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     cagtttcaccttcaacaaacat 32
              ||||||||||||||||||||||
Sbjct: 121960 cagtttcaccttcaacaaacat 121981

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>emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chromosome 6 Contains a
             novel gene and a CpG island, complete sequence
          Length = 140630

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 285   tctttcttctcctctccttgg 305
             |||||||||||||||||||||
Sbjct: 41486 tctttcttctcctctccttgg 41506

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>emb|AL021068.2|HS206D15 Human DNA sequence from clone RP1-206D15 on chromosome 1q24 Contains
             the 3' end of the BLZF1 gene for basic leucine zipper
             nuclear factor 1 (JEM-1), the gene for a novel protein
             (FLJ25846), a novel gene, the SLC19A2 gene for solute
             carrier family 19 (thiamine transporter) member 2, an ATP
             synthase 6 (MTATP6) pseudogene, and a CpG island, complete
             sequence
          Length = 101574

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 279   gcctcatctttcttctcctctcctt 303
             ||||||||||| |||||||||||||
Sbjct: 79932 gcctcatcttttttctcctctcctt 79956

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>emb|AL390218.1|NCB7N4 Neurospora crassa DNA linkage group II BAC clone B7N4
          Length = 41750

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 283   catctttcttctcctctcctt 303
             |||||||||||||||||||||
Sbjct: 35369 catctttcttctcctctcctt 35349

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>emb|AL731688.14| Mouse DNA sequence from clone RP23-291K6 on chromosome 11 Contains the
             3' end of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 113164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   tctgtcttcaaacactttgct 412
             |||||||||||||||||||||
Sbjct: 38005 tctgtcttcaaacactttgct 37985

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>gb|AF326737.2| Mus musculus sclerostin (Sost) gene, complete cds; and Meox1 gene,
             partial sequence
          Length = 81806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 277   ccgcctcatctttcttctcctctcc 301
             ||||||| |||||||||||||||||
Sbjct: 42314 ccgcctcttctttcttctcctctcc 42290

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>gb|AC068807.21| Mus musculus 11 BAC RP23-346P7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 208135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 277   ccgcctcatctttcttctcctctcc 301
             ||||||| |||||||||||||||||
Sbjct: 89378 ccgcctcttctttcttctcctctcc 89354

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>emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chromosome 11, complete
              sequence
          Length = 187006

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 277    ccgcctcatctttcttctcctctcc 301
              ||||||| |||||||||||||||||
Sbjct: 168420 ccgcctcttctttcttctcctctcc 168444

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>gb|AE013022.1| Thermoanaerobacter tengcongensis MB4, section 49 of 244 of the
            complete genome
          Length = 11441

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  catctttcttctcctctcct 302
            ||||||||||||||||||||
Sbjct: 3878 catctttcttctcctctcct 3897

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>gb|AE013013.1| Thermoanaerobacter tengcongensis MB4, section 40 of 244 of the
            complete genome
          Length = 10590

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  catctttcttctcctctcct 302
            ||||||||||||||||||||
Sbjct: 1578 catctttcttctcctctcct 1597

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>gb|AC113510.9| Mus musculus chromosome 5, clone RP23-378O9, complete sequence
          Length = 171806

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    aattctcttggcatttgagt 129
              ||||||||||||||||||||
Sbjct: 152430 aattctcttggcatttgagt 152449

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>gb|AE013205.1| Thermoanaerobacter tengcongensis MB4, section 232 of 244 of the
            complete genome
          Length = 14275

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  catctttcttctcctctcct 302
            ||||||||||||||||||||
Sbjct: 3960 catctttcttctcctctcct 3979

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>gb|AE013097.1| Thermoanaerobacter tengcongensis MB4, section 124 of 244 of the
            complete genome
          Length = 10196

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  catctttcttctcctctcct 302
            ||||||||||||||||||||
Sbjct: 7861 catctttcttctcctctcct 7880

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>gb|AE013053.1| Thermoanaerobacter tengcongensis MB4, section 80 of 244 of the
            complete genome
          Length = 10122

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  catctttcttctcctctcct 302
            ||||||||||||||||||||
Sbjct: 4690 catctttcttctcctctcct 4671

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>gb|AC121302.7| Mus musculus chromosome 13, clone RP23-163B12, complete sequence
          Length = 190256

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    atgtgcatgaagcaacaaag 236
              ||||||||||||||||||||
Sbjct: 153866 atgtgcatgaagcaacaaag 153847

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>gb|AY368907.1| Lycopersicon esculentum molecular chaperone Hsp90-2 mRNA, complete
           cds
          Length = 2100

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 691 cctcatctttcttctcctct 672

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>gb|AY368906.1| Lycopersicon esculentum molecular chaperone Hsp90-1 mRNA, complete
           cds
          Length = 2100

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 691 cctcatctttcttctcctct 672

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>gb|AY368904.1| Nicotiana benthamiana molecular chaperone Hsp90-1 mRNA, complete
           cds
          Length = 2100

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 691 cctcatctttcttctcctct 672

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>gb|AC131762.2| Mus musculus BAC clone RP24-228J18 from chromosome 12, complete
             sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   atacaaattctcttggcatt 124
             ||||||||||||||||||||
Sbjct: 65440 atacaaattctcttggcatt 65459

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>gb|AC122489.3| Mus musculus BAC clone RP24-386H10 from chromosome 13, complete sequence
          Length = 191710

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    atgtgcatgaagcaacaaag 236
              ||||||||||||||||||||
Sbjct: 184453 atgtgcatgaagcaacaaag 184434

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>gb|AY310789.1| Nicotiana benthamiana clone 10-186 unknown mRNA
          Length = 2317

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 736 cctcatctttcttctcctct 717

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>gb|AY310781.1| Nicotiana benthamiana clone 9-037 unknown mRNA
          Length = 1906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 326 cctcatctttcttctcctct 307

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>gb|BC001208.1| Homo sapiens hypothetical protein LOC63929, mRNA (cDNA clone MGC:3211
            IMAGE:3502251), complete cds
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   aaacataagtgtacaaaaaa 46
            ||||||||||||||||||||
Sbjct: 1074 aaacataagtgtacaaaaaa 1093

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>emb|AL163206.2|HS21C006 Homo sapiens chromosome 21 segment HS21C006
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acatgtaatcacttaagaca 72
             ||||||||||||||||||||
Sbjct: 46801 acatgtaatcacttaagaca 46820

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>gb|AC161582.4| Monodelphis domestica, clone XX-27C10, complete sequence
          Length = 139570

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   tcccatcttcaggcttgtct 269
             ||||||||||||||||||||
Sbjct: 14078 tcccatcttcaggcttgtct 14059

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>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the
             3' end of a novel gene for thyroid hormone
             receptor-associated protein, 150 kDa subunit (TRAP150)
             (FLJ22082), a novel transcript (FLJ22938), a gene for a
             novel protein (FLJ10647), the 3' end of a gene for
             Ser/Thr-like kinase (MGC4796) and two CpG islands,
             complete sequence
          Length = 104307

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   accagacgcctctgcgtcct 444
             ||||||||||||||||||||
Sbjct: 43720 accagacgcctctgcgtcct 43739

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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     tcagtttcaccttcaacaaa 29
              ||||||||||||||||||||
Sbjct: 787103 tcagtttcaccttcaacaaa 787084

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>emb|AL353684.8| Human DNA sequence from clone RP11-275A14 on chromosome 9, complete
             sequence
          Length = 110462

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tcagtttcaccttcaacaaa 29
             ||||||||||||||||||||
Sbjct: 52927 tcagtttcaccttcaacaaa 52908

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>emb|AL031675.4|HS751L1 Human DNA sequence from clone RP4-751L1 on chromosome 20p11.2-12.1
             Contains part of the PCSK2 gene for proprotein convertase
             subtilisin/kexin type 2, complete sequence
          Length = 89521

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   atgatctgtcttcaaacact 407
             ||||||||||||||||||||
Sbjct: 70256 atgatctgtcttcaaacact 70237

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>emb|AL009178.4|HS431P23 Human DNA sequence from clone RP3-431P23 on chromosome 6q27 Contains
             the 5' end of the MLLT4 gene for myeloid/lymphoid or
             mixed-lineage leukemia (trithorax (Drosophila) homolog)
             translocated gene protein 4 (AF-6, Afadin, ALL-1 fusion
             partner), genes HGC6.4 and HGC6.2, a serine
             palmitoyltransferase long chain base subunit 2 (SPTLC2)
             (LCB2) pseudogene and two CpG islands, complete sequence
          Length = 147971

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   gcagctaatgcaggcaatcttctt 207
             |||||||||||||||||| |||||
Sbjct: 57979 gcagctaatgcaggcaattttctt 58002

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>emb|CR339060.11| Zebrafish DNA sequence from clone DKEY-276H21 in linkage group 23,
             complete sequence
          Length = 80855

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   catgtgcatgaagcaacaaa 235
             ||||||||||||||||||||
Sbjct: 19449 catgtgcatgaagcaacaaa 19468

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>gb|BC008189.1| Mus musculus, clone IMAGE:3584589, mRNA, partial cds
          Length = 1728

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 70  cctcatctttcttctcctct 51

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>gb|AC161408.4| Mus musculus chromosome 1, clone RP24-329G10, complete sequence
          Length = 154449

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ttcccttcttcatgtgcatg 225
             ||||||||||||||||||||
Sbjct: 63322 ttcccttcttcatgtgcatg 63303

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>emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in linkage group 5, complete
              sequence
          Length = 160875

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     tcagtttcaccttcaacaaa 29
              ||||||||||||||||||||
Sbjct: 138293 tcagtttcaccttcaacaaa 138312

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>gb|AC016229.10| Homo sapiens chromosome 18, clone RP11-27G24, complete sequence
          Length = 149787

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    catgtaatcacttaagacaa 73
             ||||||||||||||||||||
Sbjct: 86512 catgtaatcacttaagacaa 86493

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>dbj|AK148842.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120454A02
            product:unclassifiable, full insert sequence
          Length = 2290

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  aattctcttggcatttgagt 129
            ||||||||||||||||||||
Sbjct: 1683 aattctcttggcatttgagt 1702

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>ref|XM_689365.1| PREDICTED: Danio rerio similar to [Carassius auratus gene, complete
            cds.], gene product (LOC566097), mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 280  cctcatctttcttctcctctcctt 303
            ||||||||| ||||||||||||||
Sbjct: 1639 cctcatcttccttctcctctcctt 1616

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>gb|AC104195.10| Mus musculus chromosome 5, clone RP24-95O4, complete sequence
          Length = 214251

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   aattctcttggcatttgagt 129
             ||||||||||||||||||||
Sbjct: 58044 aattctcttggcatttgagt 58063

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>gb|AC008944.7| Homo sapiens chromosome 5 clone CTD-2323D3, complete sequence
          Length = 109760

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    atgtaatcacttaagacaaacatg 78
             ||||||||||||||| ||||||||
Sbjct: 87070 atgtaatcacttaagccaaacatg 87093

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>gb|AC079954.18| Homo sapiens 12 BAC RP11-179A1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 158785

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     caacaaacataagtgtacaaaaaa 46
              |||||||||||||||| |||||||
Sbjct: 105237 caacaaacataagtgttcaaaaaa 105260

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>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence
          Length = 197778

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     acatgtaatcacttaagaca 72
              ||||||||||||||||||||
Sbjct: 170849 acatgtaatcacttaagaca 170868

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>emb|BX005158.8| Zebrafish DNA sequence from clone DKEY-222N6 in linkage group 8,
             complete sequence
          Length = 74638

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 280   cctcatctttcttctcctctcctt 303
             ||||||||| ||||||||||||||
Sbjct: 10133 cctcatcttccttctcctctcctt 10156

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>dbj|BS000009.1| Pan troglodytes chromosome 22 clone:PTB-118J15, map 22, complete
             sequences
          Length = 199914

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acatgtaatcacttaagaca 72
             ||||||||||||||||||||
Sbjct: 51602 acatgtaatcacttaagaca 51621

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>emb|AL844200.3| Human DNA sequence from clone RP11-552P19 on chromosome 1, complete
              sequence
          Length = 175707

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     atgtaatcacttaagacaaacatg 78
              ||||||||||||||| ||||||||
Sbjct: 164634 atgtaatcacttaagccaaacatg 164657

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>gb|AF130249.1|AF130249 Homo sapiens PAC 126N20 derived from chromosome 21p11.2, complete
             sequence, containing STCH and an unknown gene
          Length = 97083

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    acatgtaatcacttaagaca 72
             ||||||||||||||||||||
Sbjct: 25658 acatgtaatcacttaagaca 25677

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>gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence
          Length = 165633

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   gcagctaatgcaggcaatcttctt 207
             |||| |||||||||||||||||||
Sbjct: 42833 gcaggtaatgcaggcaatcttctt 42856

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>emb|CT485606.7| Mouse DNA sequence from clone RP24-246F10 on chromosome 9, complete
             sequence
          Length = 165446

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    caaacataagtgtacaaaaa 45
             ||||||||||||||||||||
Sbjct: 43766 caaacataagtgtacaaaaa 43747

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>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete
            sequence
          Length = 214925

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  atacaaattctcttggcatt 124
            ||||||||||||||||||||
Sbjct: 4519 atacaaattctcttggcatt 4500

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     cttcttcccttcttcatgtg 221
               ||||||||||||||||||||
Sbjct: 2879925 cttcttcccttcttcatgtg 2879944

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>gb|M96549.1|TOMHSC80P Tomato heat shock cognate protein 80 gene, 3' end
          Length = 3535

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 280  cctcatctttcttctcctct 299
            ||||||||||||||||||||
Sbjct: 1938 cctcatctttcttctcctct 1919

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>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete
             sequence
          Length = 182529

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   atcttcttcccttcttcatg 219
             ||||||||||||||||||||
Sbjct: 94788 atcttcttcccttcttcatg 94807

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>gb|DQ252488.1| Solanum tuberosum clone 054G03 Hsp90-2-like mRNA, complete cds
          Length = 2188

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 cctcatctttcttctcctct 299
           ||||||||||||||||||||
Sbjct: 767 cctcatctttcttctcctct 748

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>dbj|AB016897.1| Homo sapiens genomic DNA, chromosome 6q27, complete sequence
          Length = 331211

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   gcagctaatgcaggcaatcttctt 207
             |||||||||||||||||| |||||
Sbjct: 87003 gcagctaatgcaggcaattttctt 86980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,110,951
Number of Sequences: 3902068
Number of extensions: 5110951
Number of successful extensions: 105914
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105703
Number of HSP's gapped (non-prelim): 208
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result