ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48g06 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 46.2 bits (108), Expect = 4e-05 Identities = 27/75 (36%), Positives = 43/75 (57%) Frame = -2 Query: 462 SSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGG 283 S + YLR+Q + L+G+ +DD S+AN+ LV++G +LL + VS + E Sbjct: 312 SQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPE----------- 360 Query: 282 TNAEELAKYARQLSD 238 T E L ++A+ LSD Sbjct: 361 TYEEALKRFAKLLSD 375
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -2 Query: 462 SSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGG 283 S + YLR+Q + L+G+ +DD S+AN++ LV++G LL + VS E Sbjct: 312 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----------- 360 Query: 282 TNAEELAKYARQLSD 238 T E L ++A+ LSD Sbjct: 361 TYEEALKRFAKLLSD 375
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -2 Query: 462 SSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGG 283 S + YLR+Q + L+G+ +DD S+AN++ LV++G LL + VS E Sbjct: 312 SQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----------- 360 Query: 282 TNAEELAKYARQLSD 238 T E L ++A+ LSD Sbjct: 361 TYEEALKRFAKLLSD 375
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/75 (36%), Positives = 42/75 (56%) Frame = -2 Query: 462 SSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGG 283 S + YLR+Q + L+G+ +DD S+AN++ LV++G LL + VS E Sbjct: 312 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPE----------- 360 Query: 282 TNAEELAKYARQLSD 238 T E L ++A+ LSD Sbjct: 361 TYEEALKRFAKLLSD 375
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = -2 Query: 462 SSHQYLRIQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLET 313 S + YLR+Q + L+G+ +DD S+AN++ LV++G LL + VS ET Sbjct: 303 SQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSKDSPET 352
>APEA_CLOAB (Q97K30) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 465 Score = 34.7 bits (78), Expect = 0.12 Identities = 24/68 (35%), Positives = 37/68 (54%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I ++K +GS G C+ AN + + ++ L E V+ E G+ V+ GGGT A LA Sbjct: 367 IVFNKYTGSRGK-SGCNDANPEYIAELRRILSKESVNWQTAELGK-VDQGGGGTIAYILA 424 Query: 261 KYARQLSD 238 +Y Q+ D Sbjct: 425 EYGMQVID 432
>CLPB_STAAS (Q6GAV1) Chaperone clpB| Length = 869 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAR (Q6GIB2) Chaperone clpB| Length = 869 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAN (Q7A6G6) Chaperone clpB| Length = 869 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAM (Q99VB5) Chaperone clpB| Length = 869 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>CLPB_STAAC (Q5HHB0) Chaperone clpB| Length = 869 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N E LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYEALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>ARGC1_PSEPK (Q88QQ6) N-acetyl-gamma-glutamyl-phosphate reductase 1 (EC| 1.2.1.38) (AGPR 1) (N-acetyl-glutamate semialdehyde dehydrogenase 1) (NAGSA dehydrogenase 1) Length = 344 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +1 Query: 232 ALIGELPCVLGELLRVCASTGHLHIP---AGLQVHPGHLLGEKLTPNL 366 A +G L C GE ++ A GH H+P GL++ G +G P+L Sbjct: 188 AAVGSLFCEAGESMKAYAVKGHRHLPEISQGLRLAAGKDIGLTFVPHL 235
>SYFA_PSEAE (Q9I0A3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLGA 396 ++ CV+ G RVC TG L + VHP L + P Q G+GA Sbjct: 258 DIQCVICSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSNIDPEKFQGFAFGMGA 310
>PPDK_TREPA (O83728) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,| orthophosphate dikinase) Length = 901 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -2 Query: 348 LAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLS 241 LA K VD + G +E+P +A+E+A+YA+ S Sbjct: 734 LALKAKEVDYKVGAMIELPAAALSADEIARYAQFFS 769
>GPMA_RALEJ (Q476J7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 248 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = -2 Query: 405 IDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELAKYARQLSDE 235 + +C K + R++ + E +A D+++G+ V + G + L KY Q+SD+ Sbjct: 148 LTECLKDTVARVLPLWNESIAP-----DIQSGKRVVIAAHGNSIRALVKYLDQISDD 199
>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin) Length = 1004 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Frame = +2 Query: 236 SSESCLAYLASSSAFVPPPGT------STFRPVSRSTPDTFSAR 349 S E+ L Y+A +SA PP T + RP+SR PD S + Sbjct: 185 SPENILTYVAHTSALTYPPATRVKYPDNLLRPLSRLQPDELSPK 228
>SYFA_PSEF5 (Q4KEW0) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLGA 396 ++ CV+ G+ RVC TG L + VHP L + P Q G+GA Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMGA 310
>CLPB_STAAW (Q8NXE7) Chaperone clpB| Length = 869 Score = 30.4 bits (67), Expect = 2.3 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = -2 Query: 441 IQYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELA 262 I + + SA ID +K ++ V++ E++ +KV G + T +N EV N + LA Sbjct: 108 ISMEHILRSAMDIDQTTKHYINNKVEVIKEII-KKVRGGNHVTSQNPEV-----NYKALA 161 Query: 261 KYARQLSDE 235 KY R L +E Sbjct: 162 KYGRDLVEE 170
>SYFA_PSEPK (Q88K23) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLGA 396 ++ CV+ G RVC TG L + VHP L + P Q G+GA Sbjct: 258 DIQCVMCSGNGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMGA 310
>PTPR2_MOUSE (P80560) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP IA-2beta) (Protein tyrosine phosphatase-NP) (PTP-NP) Length = 1001 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%) Frame = +2 Query: 236 SSESCLAYLASSSAFVPPPGT------STFRPVSRSTPDTFSAR 349 S E+ L Y+A +SA PP T + RP SR PD S + Sbjct: 185 SPENILTYVAHTSALTYPPATRAKYPDNLLRPFSRLQPDELSPK 228
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +2 Query: 236 SSESCLAYLASSSAFVPPPGTSTFRPVSRSTPDTFSARSSPPIFTNLSKLALEQS 400 SS S + +SSS+F+ +STF TP + S+ +S + ++ + LAL S Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280
>GPMA_CHLCH (Q3AU60) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 247 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/68 (25%), Positives = 32/68 (47%) Frame = -2 Query: 438 QYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELAK 259 +Y LS + + +C K + R + + E +A ++ GRNV + G + L K Sbjct: 137 RYASLSEAEVPLTECLKDTVARFLPLWHETIAPEI-----RKGRNVIIAAHGNSIRALVK 191 Query: 258 YARQLSDE 235 Y +S++ Sbjct: 192 YLDNVSED 199
>RPOB_BRUSU (Q8G069) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 244 ELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPI 378 ++P V E L+ G ++I G +VHPG +L K+TP P+ Sbjct: 862 DIPNVSEEALKNLDEAGIVYI--GAEVHPGDILVGKITPKGESPM 904
>RPOB_BRUME (Q8YHP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 244 ELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPI 378 ++P V E L+ G ++I G +VHPG +L K+TP P+ Sbjct: 862 DIPNVSEEALKNLDEAGIVYI--GAEVHPGDILVGKITPKGESPM 904
>RPOB_BRUAB (Q57CP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 244 ELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPI 378 ++P V E L+ G ++I G +VHPG +L K+TP P+ Sbjct: 862 DIPNVSEEALKNLDEAGIVYI--GAEVHPGDILVGKITPKGESPM 904
>RPOB_BRUA2 (Q2YM15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 244 ELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPI 378 ++P V E L+ G ++I G +VHPG +L K+TP P+ Sbjct: 862 DIPNVSEEALKNLDEAGIVYI--GAEVHPGDILVGKITPKGESPM 904
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%) Frame = +2 Query: 290 PGTSTFRPVSRSTPDTFSARSSPPI--------FTNLSKLALEQSSMEPALPLS 427 PGT+T P RST T +A S PI +T LS+ ++M A P S Sbjct: 2488 PGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLSQTTTPTATMSTATPSS 2541
>SYFA_PSEU2 (Q4ZUG3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLG 393 ++ CV+ G+ RVC TG L + VHP L + P Q G+G Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMG 309
>SYFA_PSESM (Q883H8) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLG 393 ++ CV+ G+ RVC TG L + VHP L + P Q G+G Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMG 309
>SYFA_PSE14 (Q48JR9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 338 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = +1 Query: 244 ELPCVL--GELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPNLHQPIQVGLG 393 ++ CV+ G+ RVC TG L + VHP L + P Q G+G Sbjct: 258 DMECVMCSGKGCRVCKQTGWLEVMGCGMVHPNVLRMSGIDPEEFQGFAFGMG 309
>GPMA_CHLTE (Q8KFC8) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 247 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = -2 Query: 438 QYDKLSGSAGSIDDCSKANLDRLVKIGGELLAEKVSGVDLETGRNVEVPGGGTNAEELAK 259 +Y LS +C K + R + E +A ++ G+NV + G + L K Sbjct: 137 RYASLSSQELPATECLKDTVARFLPYWHETIAPQI-----RDGKNVIITAHGNSLRALVK 191 Query: 258 YARQLSDE 235 Y +SDE Sbjct: 192 YLDNISDE 199
>POLG_EBHSG (Q96725) Genome polyprotein [Contains: p16; p23; Helicase (2C-like| protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, subgenomic Length = 2334 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 257 YLASSSAFVPPPGTSTFRPVSRSTPDTFSA 346 Y SA V PGT P+ ++TP FSA Sbjct: 2190 YTPQPSAIVTTPGTPVAAPIGKNTPIMFSA 2219
>GPMA2_LACPL (Q88T35) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 230 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 10/68 (14%) Frame = -2 Query: 408 SIDDCSKANLDRLVKIGGELLAEKVSGV----------DLETGRNVEVPGGGTNAEELAK 259 +++D A+LD + GGE L + V L G+NV + G + L+K Sbjct: 132 AVNDRRYADLDPNIVPGGENLKVTLERVMPFWEDQIAPKLLDGKNVIIAAHGNSLRALSK 191 Query: 258 YARQLSDE 235 Y Q+SD+ Sbjct: 192 YIEQISDD 199
>FPRP_HUMAN (Q9P2B2) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD9 partner 1) (CD9P-1) (CD315 antigen) Length = 879 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = -1 Query: 175 LMYVFKLILTFGLGAQSV-----CLI*LCRAYCCCNSLVQES 65 ++ FK L G+G +V CLI C ++ CC VQE+ Sbjct: 825 VLNAFKYPLLIGVGLSTVIGLLSCLIGYCSSHWCCKKEVQET 866
>ARFI_ARATH (Q9XED8) Auxin response factor 9| Length = 638 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +2 Query: 260 LASSSAFVPPPGTSTFRPVSRSTPDTFSARSSPPIFTNLSKLALEQSSMEPA 415 L SSS VP T+ RP++ S P T + S P + +SK++ E+ EPA Sbjct: 460 LMSSSLAVPEEKTAPMRPINISKP-TMDSHSDPK--SEISKVS-EEKKQEPA 507
>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad| ubiquitination regulatory factor 1 homolog) (DSmurf) (Lethal with a checkpoint kinase protein) Length = 1061 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Frame = +2 Query: 266 SSSAFVPPPGTSTFRPVSRSTPDTFSARSSPP--IFTNLSKLALEQSSMEP 412 S++A VPP T P S +TP T + ++PP I +L + LE + + P Sbjct: 629 SAAAAVPPQAT----PASNATPTTLTTTTNPPHRIVPDLPQGLLEGADLLP 675
>GLNE_SHIFL (Q7UBI7) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 946 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 187 IASLV*GTLVVTASAALIGELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPN- 363 I +L+ G + T L+ E P L L+ +CA++ I + L +P LL E L PN Sbjct: 528 ITALLVGIVTRTTYLELLSEFPAALKHLISLCAASP--MIASQLARYP-LLLDELLDPNT 584 Query: 364 LHQP 375 L+QP Sbjct: 585 LYQP 588
>GLNE_ECOLI (P30870) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 946 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 187 IASLV*GTLVVTASAALIGELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPN- 363 I +L+ G + T L+ E P L L+ +CA++ I + L +P LL E L PN Sbjct: 528 ITALLVGIVTRTTYLELLSEFPAALKHLISLCAASP--MIASQLARYP-LLLDELLDPNT 584 Query: 364 LHQP 375 L+QP Sbjct: 585 LYQP 588
>GLNE_ECOL6 (Q8FDH4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 946 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 187 IASLV*GTLVVTASAALIGELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPN- 363 I +L+ G + T L+ E P L L+ +CA++ I + L +P LL E L PN Sbjct: 528 ITALLVGIVTRTTYLELLSEFPAALKHLISLCAASP--MIASQLARYP-LLLDELLDPNT 584 Query: 364 LHQP 375 L+QP Sbjct: 585 LYQP 588
>GLNE_ECO57 (Q8XBM3) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 946 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 187 IASLV*GTLVVTASAALIGELPCVLGELLRVCASTGHLHIPAGLQVHPGHLLGEKLTPN- 363 I +L+ G + T L+ E P L L+ +CA++ I + L +P LL E L PN Sbjct: 528 ITALLAGIVTRTTYLELLSEFPAALKHLISLCAASP--MIASQLARYP-LLLDELLDPNT 584 Query: 364 LHQP 375 L+QP Sbjct: 585 LYQP 588
>YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a| Length = 867 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +2 Query: 266 SSSAFVPPPGTSTFRPVSRSTPDTFSARSSPPIFTNLSKLALEQSSMEPALP 421 +S FVPPP T+ P++ S+ + + SPP+ N + L SS P +P Sbjct: 271 NSGIFVPPP-TAFSPPLTTSSRSSVAQDPSPPLTINKNSL----SSSGPLIP 317
>PER2_HUMAN (O15055) Period circadian protein 2| Length = 1255 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +2 Query: 260 LASSSAFVPPPGTSTFR-----PVSRSTPDTFSARSSPPIFTNLSKLALEQSSME 409 +AS+S P TS R P +R+TP + R+SPP+F + S L+ + ++ Sbjct: 941 MASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASPPLFQSRSSSPLQLNLLQ 995 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,781,557 Number of Sequences: 219361 Number of extensions: 1276151 Number of successful extensions: 4616 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4613 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
