Clone Name | rbart48g06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 79.8 bits (40), Expect = 7e-12 Identities = 157/196 (80%) Strand = Plus / Minus Query: 222 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 1198 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 1139 Query: 282 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 1138 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 1079 Query: 342 cggcgagaagctcacccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401 | |||||||| ||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 1078 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 1019 Query: 402 cgatggagcccgcact 417 |||| ||||||||||| Sbjct: 1018 cgatcgagcccgcact 1003
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 7e-12 Identities = 157/196 (80%) Strand = Plus / Plus Query: 222 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 23538537 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 23538596 Query: 282 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 23538597 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 23538656 Query: 342 cggcgagaagctcacccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401 | |||||||| ||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 23538657 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 23538716 Query: 402 cgatggagcccgcact 417 |||| ||||||||||| Sbjct: 23538717 cgatcgagcccgcact 23538732
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 79.8 bits (40), Expect = 7e-12 Identities = 157/196 (80%) Strand = Plus / Plus Query: 222 ggcgtcggcggcgctcatcggagagctgccttgcgtacttggcgagctcctccgcgtttg 281 |||| ||||| ||||| |||||||||||| ||||| ||||||| |||| || ||| | Sbjct: 18312 ggcgccggcgccgctcgtcggagagctgctttgcgaacttggcaagctgatctctgttcg 18371 Query: 282 tgcctccaccgggcacctccacattccggccggtctccaggtccaccccggacaccttct 341 ||||| | |||| ||| ||||| | |||||||||||||||| || | || || |||| Sbjct: 18372 tgccttcgccggccacatccacgtaatggccggtctccaggtctactcgtgagacgttct 18431 Query: 342 cggcgagaagctcacccccaatcttcaccaacctatccaagttggccttggagcagtcgt 401 | |||||||| ||||||||||||||| |||||| ||| ||||||||||||||| Sbjct: 18432 tgtcgagaagcatttccccaatcttcaccaggttatccatgttttccttggagcagtcgt 18491 Query: 402 cgatggagcccgcact 417 |||| ||||||||||| Sbjct: 18492 cgatcgagcccgcact 18507
>gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, complete sequence Length = 227533 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 agataccattttcatggcata 37 ||||||||||||||||||||| Sbjct: 207340 agataccattttcatggcata 207360
>gb|AC145802.2| Xenopus tropicalis clone CH216-80C17, complete sequence Length = 163910 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 aagcacatattatatgtgcta 60 ||||||||||||||||||||| Sbjct: 98064 aagcacatattatatgtgcta 98084
>gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, complete sequence Length = 218835 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 agataccattttcatggcata 37 ||||||||||||||||||||| Sbjct: 109343 agataccattttcatggcata 109323
>emb|CR450824.9| Zebrafish DNA sequence from clone CH211-147F12 in linkage group 23, complete sequence Length = 170611 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tcatggcatataaagcacata 48 ||||||||||||||||||||| Sbjct: 11438 tcatggcatataaagcacata 11418
>emb|AL606754.6| Human DNA sequence from clone RP11-479E16 on chromosome X Contains the 3' end of the gene for a novel protein (FLJ31204), complete sequence Length = 106636 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 tataaagcacatattatatgt 56 ||||||||||||||||||||| Sbjct: 54287 tataaagcacatattatatgt 54307
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 ttacggcgtcggcggcgctca 238 ||||||||||||||||||||| Sbjct: 4049712 ttacggcgtcggcggcgctca 4049692
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 ggccggtctccaggtccaccc 329 ||||||||||||||||||||| Sbjct: 1129003 ggccggtctccaggtccaccc 1129023
>ref|XM_566224.1| Anopheles gambiae str. PEST ENSANGP00000026283 (ENSANGG00000016941), partial mRNA Length = 1459 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 255 cgtacttggcgagctcctccgcgtt 279 |||||||||| |||||||||||||| Sbjct: 1264 cgtacttggccagctcctccgcgtt 1240
>ref|XM_310956.2| Anopheles gambiae str. PEST ENSANGP00000019430 (ENSANGG00000016941), mRNA Length = 1731 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 255 cgtacttggcgagctcctccgcgtt 279 |||||||||| |||||||||||||| Sbjct: 1536 cgtacttggccagctcctccgcgtt 1512
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 ggccggtctccaggtccaccc 329 ||||||||||||||||||||| Sbjct: 802362 ggccggtctccaggtccaccc 802382
>gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194151 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 catataaagcacatattata 53 |||||||||||||||||||| Sbjct: 70465 catataaagcacatattata 70446
>gb|AC101687.11| Mus musculus chromosome 8, clone RP23-205D7, complete sequence Length = 185997 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cattttcatggcatataaag 42 |||||||||||||||||||| Sbjct: 2516 cattttcatggcatataaag 2535
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 cggcgtcggcggcgctcatc 240 |||||||||||||||||||| Sbjct: 113747 cggcgtcggcggcgctcatc 113766
>gb|AC115767.14| Mus musculus chromosome 6, clone RP23-83K15, complete sequence Length = 257790 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 catataaagcacatattata 53 |||||||||||||||||||| Sbjct: 255591 catataaagcacatattata 255610
>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence Length = 186488 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 catataaagcacatattata 53 |||||||||||||||||||| Sbjct: 152716 catataaagcacatattata 152697
>gb|AC122395.4| Mus musculus BAC clone RP24-86H17 from chromosome 9, complete sequence Length = 203891 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 taatgactcttgcacaagac 81 |||||||||||||||||||| Sbjct: 129318 taatgactcttgcacaagac 129337
>gb|AY451853.1| Pinellia pedatisecta mannose-binding lectin PPA gene, complete cds Length = 2739 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gaagctcacccccaatcttc 367 |||||||||||||||||||| Sbjct: 2584 gaagctcacccccaatcttc 2565
>gb|DQ462412.1| Spinibarbus sinensis neuropeptide Y mRNA, complete cds Length = 740 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 202 tacttggcgagctcctccgc 183
>ref|XM_739811.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000210.02.0) partial mRNA Length = 888 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cacatattatatgtgctaat 62 |||||||||||||||||||| Sbjct: 274 cacatattatatgtgctaat 255
>emb|BX016260.1|CNS08KPK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA24BE12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 974 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 294 gcacctccacattccggccggtct 317 ||||||||||||||| |||||||| Sbjct: 310 gcacctccacattcccgccggtct 287
>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20 Contains the gene for a novel protein (zgc:63952), the 3' end of the gene for a novel protein similar to mouse and human importin 4 (IPO4), three genes for transposase, a novel gene and six CpG islands, complete sequence Length = 190000 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 caattgctagtttggtttgaggca 208 |||||||| ||||||||||||||| Sbjct: 60892 caattgctggtttggtttgaggca 60869
>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19, complete sequence Length = 147881 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 57178 tacttggcgagctcctccgc 57197
>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence Length = 180854 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ttgaacacatacattaaact 178 |||||||||||||||||||| Sbjct: 37889 ttgaacacatacattaaact 37870
>gb|AC107870.6| Homo sapiens chromosome 8, clone CTC-777N14, complete sequence Length = 73460 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ttgaacacatacattaaact 178 |||||||||||||||||||| Sbjct: 50721 ttgaacacatacattaaact 50702
>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence Length = 160046 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ttgaacacatacattaaact 178 |||||||||||||||||||| Sbjct: 151905 ttgaacacatacattaaact 151886
>ref|NM_131074.1| Danio rerio neuropeptide Y (npy), mRNA Length = 1033 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 204 tacttggcgagctcctccgc 185
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 ccaccgggcacctccacattccggccgg 314 |||||||||| ||| ||||||||||||| Sbjct: 3069891 ccaccgggcagctcgacattccggccgg 3069864
>gb|AC159097.5| Mus musculus chromosome 8, clone RP24-310O9, complete sequence Length = 179528 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cattttcatggcatataaag 42 |||||||||||||||||||| Sbjct: 82884 cattttcatggcatataaag 82865
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 caccttctcggcgagaagct 353 |||||||||||||||||||| Sbjct: 1880735 caccttctcggcgagaagct 1880754
>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence Length = 193317 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ataattaaatcaaacaaaca 125 |||||||||||||||||||| Sbjct: 124975 ataattaaatcaaacaaaca 124994
>gb|AF287347.1|AF287347 Cyprinus carpio neuropeptide Y mRNA, complete cds Length = 730 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 211 tacttggcgagctcctccgc 192
>gb|AF233874.1|AF233874 Danio rerio neuropeptide Y precursor gene, complete cds Length = 2987 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 879 tacttggcgagctcctccgc 860
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20, complete sequence Length = 73842 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tataaagcacatattatatg 55 |||||||||||||||||||| Sbjct: 27565 tataaagcacatattatatg 27584
>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete sequence Length = 255824 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 226591 tacttggcgagctcctccgc 226610
>dbj|AP005661.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1182F3, complete sequence Length = 151887 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ttgaacacatacattaaact 178 |||||||||||||||||||| Sbjct: 81263 ttgaacacatacattaaact 81244
>gb|M87297.1|CRANPY Carassius auratus neuropeptide Y mRNA, complete cds Length = 1051 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tacttggcgagctcctccgc 276 |||||||||||||||||||| Sbjct: 190 tacttggcgagctcctccgc 171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,764,381 Number of Sequences: 3902068 Number of extensions: 3764381 Number of successful extensions: 89258 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88928 Number of HSP's gapped (non-prelim): 330 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)