ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48g05 |
|---|---|
| Clone Library Name | barley_pub |
>AMY2_HORVU (P04063) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY2-2) (High pI alpha-amylase) Length = 427 Score = 35.4 bits (80), Expect = 0.093 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -2 Query: 426 QLGAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 247 ++G +G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 258 KVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 312 Query: 246 KTGYSIHTFWP 214 TG + H WP Sbjct: 313 DTGSTQH-MWP 322
>AMY3_HORVU (P04747) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone PHV19) (Fragment) Length = 368 Score = 35.4 bits (80), Expect = 0.093 Identities = 21/71 (29%), Positives = 34/71 (47%) Frame = -2 Query: 426 QLGAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 247 ++G +G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 258 KVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 312 Query: 246 KTGYSIHTFWP 214 TG + H WP Sbjct: 313 DTGSTQH-MWP 322
>AMY6_HORVU (P04750) Alpha-amylase type B isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clones GRAMY56 and 963) Length = 429 Score = 35.0 bits (79), Expect = 0.12 Identities = 21/71 (29%), Positives = 33/71 (46%) Frame = -2 Query: 426 QLGAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNW 247 ++G G A F +T G++ V L ++ + M IGWW + V ++DN Sbjct: 260 KVGGSGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGM-----IGWWPAKAVTFVDNH 314 Query: 246 KTGYSIHTFWP 214 TG + H WP Sbjct: 315 DTGSTQH-MWP 324
>GABP_ECOLI (P25527) GABA permease (4-amino butyrate transport carrier)| (Gamma-aminobutyrate permease) Length = 466 Score = 34.3 bits (77), Expect = 0.21 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -2 Query: 438 GSGMQLGAEGFAVGFLYTFVGLMIAVVTHLLVK--VESLQTQRFAMLAVMAIGWWAVRKV 265 GS + + G AV Y F GL++ ++ +L + V + T F+ A AIG WA + Sbjct: 35 GSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTI 94 Query: 264 VYLDNW 247 +L W Sbjct: 95 GWLYWW 100
>AMY1_ORYSA (P17654) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 434 Score = 32.3 bits (72), Expect = 0.79 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -2 Query: 420 GAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 241 GA A F +T G++ V L ++ + M IGWW + ++DN T Sbjct: 267 GANSNATAFDFTTKGILNVAVEGELWRLRGEDGKAPGM-----IGWWPAKATTFVDNHDT 321 Query: 240 GYSIHTFWP 214 G + H WP Sbjct: 322 GSTQH-LWP 329
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 32.0 bits (71), Expect = 1.0 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%) Frame = +1 Query: 37 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIW--------MDDSTSSATKERSIDGRLG 192 S++H PEN + TK QP S++++ +TSS T R++ R Sbjct: 773 SLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAA 832 Query: 193 QHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDR 294 PA +P ++ VP+LP + P P P R Sbjct: 833 S---PA-KPSSLDLVPNLPRAGLPPSPALPRPSR 862
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 31.6 bits (70), Expect = 1.3 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Frame = +1 Query: 37 SIFHNKAPEN*NAKLGSTKLQPK*CSISVWSIWMDDS----TSSATKERSIDGRLGQHLP 204 S++H PEN + TK QP S++++ +S AT R+ + Sbjct: 775 SLYHGYLPENGVLRPEPTKQQPHQMRPSLYALSPVKEPAKISSRATSSRASSRTVSPRAA 834 Query: 205 PATRPEGMNAVPSLPVIQVNHLPDCPPPDR 294 +P ++ VP+LP + P P P R Sbjct: 835 SPAKPSSLDLVPNLPRAGLPPSPALPRPSR 864
>AMY4_HORVU (P04748) Alpha-amylase type B isozyme (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Clone 103) (Fragment) Length = 153 Score = 31.6 bits (70), Expect = 1.3 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 Query: 291 IGWWAVRKVVYLDNWKTGYSIHTFWP 214 IGWW + V ++DN TG + H WP Sbjct: 24 IGWWPAKAVTFVDNHDTGSTQH-MWP 48
>AMC2_ORYSA (P27941) Alpha-amylase isozyme C2 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = -2 Query: 420 GAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 241 G + F +T G+M V L ++ Q + A IGWW + V ++DN T Sbjct: 261 GTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGK-----APGVIGWWPAKAVTFVDNHDT 315 Query: 240 GYSIHTFWP 214 G S WP Sbjct: 316 G-STQQMWP 323
>AM2A_ORYSA (P27935) Alpha-amylase isozyme 2A precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) Length = 445 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = -2 Query: 420 GAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 241 G + F +T G+M V L ++ Q + A IGWW + V ++DN T Sbjct: 261 GTASAGMVFDFTTKGIMNTAVEGELWRLIDQQGK-----APGVIGWWPAKAVTFVDNHDT 315 Query: 240 GYSIHTFWP 214 G S WP Sbjct: 316 G-STQQMWP 323
>AMY1_HORVU (P00693) Alpha-amylase type A isozyme precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (AMY1) (Low pI alpha-amylase) Length = 438 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = -2 Query: 420 GAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAMLAVMAIGWWAVRKVVYLDNWKT 241 GA + F +T G++ A V L ++ Q + A +GWW + ++DN T Sbjct: 262 GAASAGMVFDFTTKGILNAAVEGELWRLIDPQGK-----APGVMGWWPAKAATFVDNHDT 316 Query: 240 GYSIHTFWP 214 G S WP Sbjct: 317 G-STQAMWP 324
>PROS_DROVI (Q9U6A1) Protein prospero| Length = 1556 Score = 30.4 bits (67), Expect = 3.0 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +1 Query: 217 PEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHSYHQAHEGVQE 396 P+GMN V + + P C PPD+ Q Q QQ + Q H+ Q+ Sbjct: 1020 PQGMNPVAAAALYNSMASPFCLPPDQQQQQQ------QQQQAAQQQQQQAVQQQHQSAQQ 1073 Query: 397 TNRK 408 T ++ Sbjct: 1074 TQQQ 1077
>G3OX2_ARATH (Q9ZT84) Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) Length = 347 Score = 30.0 bits (66), Expect = 3.9 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 250 VIQVNHLPDCPPPDR 294 VIQ+NH P CP PDR Sbjct: 204 VIQLNHYPKCPEPDR 218
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 30.0 bits (66), Expect = 3.9 Identities = 15/58 (25%), Positives = 22/58 (37%) Frame = +1 Query: 211 TRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCDHSYHQAHE 384 T P + ++PV Q P P H C+ C HL++ HS + E Sbjct: 146 TNPSSSASTTAMPVTQSVKKPSKPVKKNHACEMCGKAFRDVYHLNRHKLSHSDEKPFE 203
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 29.6 bits (65), Expect = 5.1 Identities = 22/94 (23%), Positives = 35/94 (37%) Frame = +1 Query: 181 GRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLCLQALHLHQQVCD 360 G+ H PP +P VIQ +H P D + H + L +H Sbjct: 1016 GQQPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLRE-APSPLMIHSPQMS 1074 Query: 361 HSYHQAHEGVQETNRKPLRAELHP*TMVEEYELV 462 H+ + N +P + EL ++V+ LV Sbjct: 1075 QFQSLTHQSPPQQNVQPKKQELRAASVVQPQPLV 1108
>END4_BPT4 (P39250) Endonuclease IV (EC 3.1.21.-)| Length = 185 Score = 29.3 bits (64), Expect = 6.7 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -2 Query: 510 GIIRHTPMFITDREDPNKLV 451 G+I++TP FI DRED K+V Sbjct: 154 GVIQYTPKFIGDREDLRKVV 173
>GRP33_ARTSA (P13230) Glycine-rich protein GRP33| Length = 308 Score = 28.9 bits (63), Expect = 8.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 486 FITDREDPNKLVFFYHGSGMQLGAEGFAVG 397 +IT EDPN ++ HG+G +G G G Sbjct: 172 YITPEEDPNYMMMAGHGAGPMMGMGGMMGG 201
>BLK_HUMAN (P51451) Tyrosine-protein kinase BLK (EC 2.7.10.2) (B lymphocyte| kinase) (p55-BLK) Length = 504 Score = 28.9 bits (63), Expect = 8.7 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 145 STSSATKERSIDGR-LGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRH 297 S+ KE+ I + GQ P + +A P P++ NHL PPPD H Sbjct: 4 SSKKPDKEKPIKEKDKGQWSPLKVSAQDKDAPPLPPLVVFNHLTP-PPPDEH 54
>WC1_NEUCR (Q01371) White collar 1 protein (WC1)| Length = 1167 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/95 (24%), Positives = 36/95 (37%) Frame = +1 Query: 145 STSSATKERSIDGRLGQHLPPATRPEGMNAVPSLPVIQVNHLPDCPPPDRHDCQHCKSLC 324 ST+ AT S + PPAT P G + LP HL H + Sbjct: 1046 STTIATSANSAASTVNALGPPATGPSGGSPAQHLP----PHLQG---------THLNAQA 1092 Query: 325 LQALHLHQQVCDHSYHQAHEGVQETNRKPLRAELH 429 +Q +H H+Q H + Q+ ++ + + H Sbjct: 1093 MQRVHQHKQHQQHQQQHQQQHQQQHQQQHQQLQQH 1127
>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 464 Score = 28.9 bits (63), Expect = 8.7 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -2 Query: 423 LGAEGFAVGFLYTFVGLMIAVVTHLLVKVESLQTQRFAML 304 LGAEGF +GF+ V L IA T L++++ +Q Q A+L Sbjct: 421 LGAEGFWIGFV---VSLTIA-ATLLMIRMRKIQAQPDAIL 456
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = -3 Query: 254 ITGRLGTAFIPSGRVAGGKCCPNRPSMLLSFVAEDVESSIQIDHTEI 114 + GR+G+ F+ +G GG C P + ++ L A+D ++ +++ T + Sbjct: 246 LDGRIGSKFLHAGPGYGGSCFP-KDTLALVKTAQDHDTPVRLVETTV 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,431,923 Number of Sequences: 219361 Number of extensions: 1891884 Number of successful extensions: 6069 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6063 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
