Clone Information

BLAST Search Result

Clone Name	rbart48g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC016781.6\| Oryza sativa (japonica cultivar-group) clone OSJN...	287	2e-74
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	287	2e-74
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	287	2e-74
4	dbj\|AK109347.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	287	2e-74
5	dbj\|AK102421.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	287	2e-74
6	dbj\|AK061364.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	287	2e-74
7	ref\|XM_462955.1\| Oryza sativa (japonica cultivar-group), predic...	281	1e-72
8	gb\|AY108427.1\| Zea mays PCO132322 mRNA sequence	272	1e-69
9	gb\|BT017829.1\| Zea mays clone EL01N0508G07.c mRNA sequence	264	3e-67
10	gb\|DQ296190.1\| Brassica rapa clone 55 unknown mRNA	62	2e-06
11	ref\|NM_104861.1\| Arabidopsis thaliana oligosaccharide transporte...	44	0.45
12	dbj\|AK176101.1\| Arabidopsis thaliana mRNA for hypothetical prote...	44	0.45
13	gb\|AC005882.1\|AC005882 Arabidopsis thaliana chromosome I BAC T13...	44	0.45
14	gb\|AC103975.9\| Homo sapiens chromosome 15, clone RP11-1001M11, c...	42	1.8
15	gb\|AC022748.10\| Homo sapiens chromosome 15, clone RP11-160C18, c...	42	1.8
16	gb\|AC157948.5\| Mus musculus BAC clone RP23-197K17 from chromosom...	42	1.8
17	gb\|AC149283.2\| Mus musculus BAC clone RP23-233O21 from 7, comple...	42	1.8
18	ref\|NM_101029.1\| Arabidopsis thaliana oligosaccharide transporte...	40	7.0
19	ref\|NM_187981.1\| Oryza sativa (japonica cultivar-group), Ozsa840...	40	7.0
20	ref\|XM_655563.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	7.0
21	gb\|AC125331.4\| Mus musculus chromosome 7 clone RP23-11L1, comple...	40	7.0
22	gb\|AC025448.6\| Homo sapiens chromosome 5 clone CTD-2113L7, compl...	40	7.0
23	gb\|AC122245.5\| Mus musculus BAC clone RP23-151P21 from 18, compl...	40	7.0
24	gb\|AC122828.3\| Mus musculus BAC clone RP23-215B8 from 13, comple...	40	7.0
25	emb\|AL627250.8\| Human DNA sequence from clone RP13-222H17 on chr...	40	7.0
26	gb\|AC087237.14\| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C...	40	7.0
27	emb\|BX294025.1\|NCB16M17 Neurospora crassa DNA linkage group V BA...	40	7.0
28	gb\|AC116362.3\| Homo sapiens chromosome 5 clone RP11-756H20, comp...	40	7.0
29	gb\|AC011477.5\| Homo sapiens chromosome 19 clone CTC-559E9, compl...	40	7.0
30	gb\|AC103921.2\| Homo sapiens chromosome 3 clone RP11-131O21, comp...	40	7.0
31	gb\|AC103587.2\| Homo sapiens chromosome 3 clone RP11-164G20, comp...	40	7.0
32	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
33	gb\|AC011661.5\|AC011661 Genomic sequence for Arabidopsis thaliana...	40	7.0
34	dbj\|AP001383.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.0
35	gb\|AC008905.6\|AC008905 Homo sapiens chromosome 5 clone CTD-2259I...	40	7.0
36	gb\|AC008865.3\|AC008865 Homo sapiens chromosome 5 clone CTD-2193I...	40	7.0
37	dbj\|BS000101.1\| Pan troglodytes chromosome 22 clone:PTB-115B20, ...	40	7.0
38	dbj\|AP001693.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	7.0
39	gb\|AC004388.1\|AC004388 Homo Sapiens Chromosome X clone bWXD306, ...	40	7.0
40	emb\|AL805923.6\| Mouse DNA sequence from clone RP23-65B16 on chro...	40	7.0
41	gb\|AC159189.2\| Mus musculus BAC clone RP24-159L17 from chromosom...	40	7.0
42	dbj\|AP001341.1\| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	7.0

>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Plus

                                                                         
Query: 196   catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
             ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 94535 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 94594

                                                                         
Query: 256   caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
             ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 94595 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 94654

                                                                         
Query: 316   tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
              |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 94655 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 94714

                                                                         
Query: 376   gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
              |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 94715 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 94774

                                                                         
Query: 436   accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
              || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 94775 cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 94834

                                  
Query: 496   atgcctgatgatcccgtacat 516
              ||||||||||||||||||||
Sbjct: 94835 gtgcctgatgatcccgtacat 94855

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Plus

                                                                            
Query: 196      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20176451 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20176510

                                                                            
Query: 256      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20176511 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20176570

                                                                            
Query: 316      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20176571 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20176630

                                                                            
Query: 376      gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
                 |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 20176631 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 20176690

                                                                            
Query: 436      accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
                 || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 20176691 cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 20176750

                                     
Query: 496      atgcctgatgatcccgtacat 516
                 ||||||||||||||||||||
Sbjct: 20176751 gtgcctgatgatcccgtacat 20176771

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Plus

                                                                            
Query: 196      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20169478 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20169537

                                                                            
Query: 256      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20169538 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20169597

                                                                            
Query: 316      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20169598 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20169657

                                                                            
Query: 376      gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
                 |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 20169658 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 20169717

                                                                            
Query: 436      accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
                 || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 20169718 cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 20169777

                                     
Query: 496      atgcctgatgatcccgtacat 516
                 ||||||||||||||||||||
Sbjct: 20169778 gtgcctgatgatcccgtacat 20169798

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>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full
            insert sequence
          Length = 1273

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Minus

                                                                        
Query: 196  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1032 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 973

                                                                        
Query: 256  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 972  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 913

                                                                        
Query: 316  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 912  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 853

                                                                        
Query: 376  gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
             |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 852  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 793

                                                                        
Query: 436  accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
             || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 792  cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 733

                                 
Query: 496  atgcctgatgatcccgtacat 516
             ||||||||||||||||||||
Sbjct: 732  gtgcctgatgatcccgtacat 712

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>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full
            insert sequence
          Length = 1398

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Minus

                                                                        
Query: 196  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1052 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 993

                                                                        
Query: 256  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 992  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 933

                                                                        
Query: 316  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 932  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 873

                                                                        
Query: 376  gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
             |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 872  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 813

                                                                        
Query: 436  accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
             || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 812  cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 753

                                 
Query: 496  atgcctgatgatcccgtacat 516
             ||||||||||||||||||||
Sbjct: 752  gtgcctgatgatcccgtacat 732

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>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full
            insert sequence
          Length = 1328

 Score =  287 bits (145), Expect = 2e-74
 Identities = 277/321 (86%)
 Strand = Plus / Minus

                                                                        
Query: 196  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 255
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1047 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 988

                                                                        
Query: 256  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 315
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 987  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 928

                                                                        
Query: 316  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 375
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 927  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 868

                                                                        
Query: 376  gcccacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 435
             |||||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 867  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccaga 808

                                                                        
Query: 436  accatggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgt 495
             || ||||||||||| |||||||||||||||||    ||||| ||||||||||| |||||
Sbjct: 807  cccctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgt 748

                                 
Query: 496  atgcctgatgatcccgtacat 516
             ||||||||||||||||||||
Sbjct: 747  gtgcctgatgatcccgtacat 727

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>ref|XM_462955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  281 bits (142), Expect = 1e-72
 Identities = 274/318 (86%)
 Strand = Plus / Minus

                                                                        
Query: 199  ttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccag 258
            |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 1011 ttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatccaa 952

                                                                        
Query: 259  gtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcg 318
               || ||||||| | |||||||||||||| ||   |||||| |||||||| | ||| ||
Sbjct: 951  aagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaaacg 892

                                                                        
Query: 319  ctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggcc 378
            |||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| || ||
Sbjct: 891  ctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgagccc 832

                                                                        
Query: 379  cacgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaacc 438
            |||||  ||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct: 831  cacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatcccagaccc 772

                                                                        
Query: 439  atggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgtatg 498
             ||||||||||| |||||||||||||||||    ||||| ||||||||||| ||||| ||
Sbjct: 771  ctggtagaagaacacgagcttgtttggatcggaccggtcggtgatgaacatcggcgtgtg 712

                              
Query: 499  cctgatgatcccgtacat 516
            ||||||||||||||||||
Sbjct: 711  cctgatgatcccgtacat 694

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>gb|AY108427.1| Zea mays PCO132322 mRNA sequence
          Length = 860

 Score =  272 bits (137), Expect = 1e-69
 Identities = 272/317 (85%)
 Strand = Plus / Minus

                                                                       
Query: 201 acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 260
           |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 513 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 454

                                                                       
Query: 261 aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 320
           | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 453 agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 394

                                                                       
Query: 321 gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 380
           ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 393 gtgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 334

                                                                       
Query: 381 cgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaaccat 440
           |||  ||||||||||| || || | ||||||||| || || | |||||||||||| || |
Sbjct: 333 cgagtgtgtacaagaacccgacagtaaacccctcagcccccaactgcatccctgacccct 274

                                                                       
Query: 441 ggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgtatgcc 500
           |||||||||| ||||||||||| |||||  | ||||| |||| |||||||||||| ||||
Sbjct: 273 ggtagaagaacacgagcttgttgggatccgcgcggtcggtgaggaacatgggcgtgtgcc 214

                            
Query: 501 tgatgatcccgtacatg 517
           |||| ||||| ||||||
Sbjct: 213 tgataatcccatacatg 197

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>gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence
          Length = 1374

 Score =  264 bits (133), Expect = 3e-67
 Identities = 271/317 (85%)
 Strand = Plus / Minus

                                                                        
Query: 201  acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 260
            |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 1055 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 996

                                                                        
Query: 261  aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 320
            | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 995  agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 936

                                                                        
Query: 321  gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 380
            | ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 935  gcgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 876

                                                                        
Query: 381  cgaaggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaaccat 440
            |||  ||||||||||| || || | ||||||||| || || |||||||||||||| || |
Sbjct: 875  cgagtgtgtacaagaacccgacagtaaacccctcagcccccagctgcatccctgacccct 816

                                                                        
Query: 441  ggtagaagaatacgagcttgtttggatcttctcggtccgtgatgaacatgggcgtatgcc 500
            |||||||||| ||||||||||| |||||  | ||||| |||| ||||||||| || ||||
Sbjct: 815  ggtagaagaacacgagcttgttgggatccgcgcggtcggtgaggaacatgggtgtgtgcc 756

                             
Query: 501  tgatgatcccgtacatg 517
            |||| ||||| ||||||
Sbjct: 755  tgataatcccatacatg 739

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>gb|DQ296190.1| Brassica rapa clone 55 unknown mRNA
          Length = 1189

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 386 gtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctgaaccatggtag 445
           ||||||||||| || || || |||||||| || || ||||||||||| || || ||||||
Sbjct: 877 gtgtacaagaaccccacagcgaacccctcagctccaagctgcatcccagatccttggtag 818

                                  
Query: 446 aagaatacgagcttgtttggatc 468
           ||||| || |||||||| |||||
Sbjct: 817 aagaaaacaagcttgttcggatc 795

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>ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporter AT1G61790 mRNA,
            complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 239  ccagtcttccagttatccaggtaaac 264
            ||||||||||||||||||| ||||||
Sbjct: 1001 ccagtcttccagttatccaagtaaac 976

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>dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-88-K11
          Length = 345

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 239 ccagtcttccagttatccaggtaaac 264
           ||||||||||||||||||| ||||||
Sbjct: 77  ccagtcttccagttatccaagtaaac 52

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>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 239   ccagtcttccagttatccaggtaaac 264
             ||||||||||||||||||| ||||||
Sbjct: 67285 ccagtcttccagttatccaagtaaac 67260

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>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   aaaccaccttcctgactgccc 281
             |||||||||||||||||||||
Sbjct: 22849 aaaccaccttcctgactgccc 22869

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>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 261    aaaccaccttcctgactgccc 281
              |||||||||||||||||||||
Sbjct: 120526 aaaccaccttcctgactgccc 120506

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>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete
            sequence
          Length = 201846

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 331  gctctccaccttcaccagcaagtgt 355
            |||||| ||||||||||||||||||
Sbjct: 2447 gctctctaccttcaccagcaagtgt 2423

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>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 331    gctctccaccttcaccagcaagtgt 355
              |||||| ||||||||||||||||||
Sbjct: 197849 gctctctaccttcaccagcaagtgt 197873

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>ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporter AT1G11560 mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 239 ccagtcttccagttatccaggtaaaccaccttcctgactgccca 282
           ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 989 ccagtcttccaattatccaagtaaacaactttcctcacagccca 946

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>ref|NM_187981.1| Oryza sativa (japonica cultivar-group), Ozsa8401 predicted mRNA
          Length = 3783

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 450 atacgagcttgtttggatct 469
           ||||||||||||||||||||
Sbjct: 417 atacgagcttgtttggatct 398

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>ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3051.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   ataaaatgactcggttctct 39
            ||||||||||||||||||||
Sbjct: 1584 ataaaatgactcggttctct 1565

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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    ccaccttcctgactgcccac 283
              ||||||||||||||||||||
Sbjct: 121813 ccaccttcctgactgcccac 121832

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>gb|AC025448.6| Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence
          Length = 164190

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 77970 gagcttgtttggatcttctc 77951

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>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    cctctgcaacaaaggaaaga 171
              ||||||||||||||||||||
Sbjct: 146179 cctctgcaacaaaggaaaga 146160

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>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    tgcaacaaaggaaagaagca 175
              ||||||||||||||||||||
Sbjct: 129467 tgcaacaaaggaaagaagca 129448

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>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a
              novel pseudogene, complete sequence
          Length = 177796

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    gagcttgtttggatcttctc 473
              ||||||||||||||||||||
Sbjct: 177487 gagcttgtttggatcttctc 177468

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>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 345    ccagcaagtgtgtgaccacagcta 368
              ||||||||||||| ||||||||||
Sbjct: 112713 ccagcaagtgtgtcaccacagcta 112736

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>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   gccagcattgcaaatcgctgtgtc 325
             ||||||||||||| ||||||||||
Sbjct: 44258 gccagcattgcaagtcgctgtgtc 44281

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>gb|AC116362.3| Homo sapiens chromosome 5 clone RP11-756H20, complete sequence
          Length = 178530

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 74980 gagcttgtttggatcttctc 74961

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>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence
          Length = 178710

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 77602 gagcttgtttggatcttctc 77621

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>gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, complete sequence
          Length = 156264

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 55538 gagcttgtttggatcttctc 55557

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>gb|AC103587.2| Homo sapiens chromosome 3 clone RP11-164G20, complete sequence
          Length = 133921

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 99061 gagcttgtttggatcttctc 99080

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 450     atacgagcttgtttggatct 469
               ||||||||||||||||||||
Sbjct: 8923956 atacgagcttgtttggatct 8923975

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>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
             complete sequence
          Length = 84797

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 239   ccagtcttccagttatccaggtaaaccaccttcctgactgccca 282
             ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 67360 ccagtcttccaattatccaagtaaacaactttcctcacagccca 67317

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>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0453A06
          Length = 154378

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   atacgagcttgtttggatct 469
             ||||||||||||||||||||
Sbjct: 31711 atacgagcttgtttggatct 31730

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>gb|AC008905.6|AC008905 Homo sapiens chromosome 5 clone CTD-2259I14, complete sequence
          Length = 129430

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 13275 gagcttgtttggatcttctc 13294

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>gb|AC008865.3|AC008865 Homo sapiens chromosome 5 clone CTD-2193I10, complete sequence
          Length = 191162

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 67961 gagcttgtttggatcttctc 67980

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>dbj|BS000101.1| Pan troglodytes chromosome 22 clone:PTB-115B20, map 22, complete
              sequences
          Length = 191901

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    gagcttgtttggatcttctc 473
              ||||||||||||||||||||
Sbjct: 165425 gagcttgtttggatcttctc 165406

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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 14408 gagcttgtttggatcttctc 14389

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>gb|AC004388.1|AC004388 Homo Sapiens Chromosome X clone bWXD306, complete sequence
          Length = 243041

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  gagcttgtttggatcttctc 473
            ||||||||||||||||||||
Sbjct: 1685 gagcttgtttggatcttctc 1666

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>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    cacagctatcatcaggccca 380
              ||||||||||||||||||||
Sbjct: 100630 cacagctatcatcaggccca 100611

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>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    acagctatcatcaggcccac 381
              ||||||||||||||||||||
Sbjct: 109099 acagctatcatcaggcccac 109080

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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   gagcttgtttggatcttctc 473
             ||||||||||||||||||||
Sbjct: 73151 gagcttgtttggatcttctc 73132


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,377,358
Number of Sequences: 3902068
Number of extensions: 4377358
Number of successful extensions: 72887
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72752
Number of HSP's gapped (non-prelim): 121
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result