ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48g03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full insert sequence Length = 1157 Score = 190 bits (96), Expect = 3e-45 Identities = 261/316 (82%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 356 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789 Query: 357 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 416 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729 Query: 417 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 476 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 728 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 669 Query: 477 tgtacttggttgaatc 492 |||| ||||||||||| Sbjct: 668 tgtatttggttgaatc 653
>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full insert sequence Length = 1725 Score = 190 bits (96), Expect = 3e-45 Identities = 261/316 (82%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 356 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455 Query: 357 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 416 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395 Query: 417 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 476 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1394 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1335 Query: 477 tgtacttggttgaatc 492 |||| ||||||||||| Sbjct: 1334 tgtatttggttgaatc 1319
>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full insert sequence Length = 1705 Score = 190 bits (96), Expect = 3e-45 Identities = 261/316 (82%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 356 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381 Query: 357 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 416 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321 Query: 417 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 476 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1320 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1261 Query: 477 tgtacttggttgaatc 492 |||| ||||||||||| Sbjct: 1260 tgtatttggttgaatc 1245
>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence Length = 1349 Score = 129 bits (65), Expect = 9e-27 Identities = 256/317 (80%), Gaps = 2/317 (0%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1241 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1182 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | ||||||| | | |||||||||||||| | ||| |||||||| ||||| ||||| | Sbjct: 1181 attgctcttgttcatgcaggttggaagggatcttatcgtaaacatcagtgaaaagctcag 1122 Query: 297 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 355 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1121 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1063 Query: 356 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 415 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1062 actctgctcctgaggtcagattcttcagcatcagaccaccagtcattaccctgaacccat 1003 Query: 416 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 475 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1002 tttctgtatctggaaattggatccctcgctgttcgccaatgctcaatctcatcaactggc 943 Query: 476 ctgtacttggttgaatc 492 ||||||||||| ||||| Sbjct: 942 ctgtacttggtcgaatc 926
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 1e-25 Identities = 126/147 (85%) Strand = Plus / Minus Query: 346 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 405 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615 Query: 406 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 465 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211614 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211555 Query: 466 atcagccggcctgtacttggttgaatc 492 ||| |||||||||| ||||||||||| Sbjct: 4211554 atcgaccggcctgtatttggttgaatc 4211528 Score = 69.9 bits (35), Expect = 7e-09 Identities = 137/171 (80%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211811 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 347 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211810 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211760
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 1e-25 Identities = 126/147 (85%) Strand = Plus / Minus Query: 346 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 405 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602 Query: 406 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 465 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211601 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211542 Query: 466 atcagccggcctgtacttggttgaatc 492 ||| |||||||||| ||||||||||| Sbjct: 4211541 atcgaccggcctgtatttggttgaatc 4211515 Score = 69.9 bits (35), Expect = 7e-09 Identities = 137/171 (80%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211798 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 347 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211797 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211747
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 125 bits (63), Expect = 1e-25 Identities = 126/147 (85%) Strand = Plus / Plus Query: 346 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 405 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168 Query: 406 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 465 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 72169 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 72228 Query: 466 atcagccggcctgtacttggttgaatc 492 ||| |||||||||| ||||||||||| Sbjct: 72229 atcgaccggcctgtatttggttgaatc 72255 Score = 69.9 bits (35), Expect = 7e-09 Identities = 137/171 (80%) Strand = Plus / Plus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 71972 Query: 297 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 347 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 71973 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 72023
>gb|AY106153.1| Zea mays PCO079304 mRNA sequence Length = 1709 Score = 121 bits (61), Expect = 2e-24 Identities = 255/317 (80%), Gaps = 2/317 (0%) Strand = Plus / Minus Query: 177 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 236 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1587 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1528 Query: 237 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 296 | ||||||| | | |||||||||||||| | || |||||||| ||||| ||||| | Sbjct: 1527 attgctcttgttcatgcaggttggaagggatcttgtcgtaaacatcagtgaaaagctcag 1468 Query: 297 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 355 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1467 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1409 Query: 356 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 415 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1408 actctgctcctgagctcagattcttcagcatcagaccaccagtcattaccctgaacccat 1349 Query: 416 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 475 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1348 tttctgtatctggaaatcggatccctcgctgttcgccaatgctcaatctcatcaactggc 1289 Query: 476 ctgtacttggttgaatc 492 ||||||||||| ||||| Sbjct: 1288 ctgtacttggtcgaatc 1272
>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence Length = 1695 Score = 117 bits (59), Expect = 4e-23 Identities = 194/239 (81%) Strand = Plus / Minus Query: 254 aggttggaagggatttgatcataaacatctgtgaagagctccgcaagcccgtgttttggc 313 |||||||||||||| | ||| |||||||| ||||| ||||| | || | |||||||| Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395 Query: 314 atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 373 || || || || ||||| |||||||| || ||||||| ||||| || ||||||| | Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335 Query: 374 gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 433 || |||| || | | ||||||| |||| |||||||||||||||||||| ||||| | Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275 Query: 434 ggatcccttgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatc 492 |||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| Sbjct: 1274 ggatccctcgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatc 1216
>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840 mRNA, complete cds Length = 1004 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence Length = 160846 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 agattttttggatgagcagtt 55 ||||||||||||||||||||| Sbjct: 16375 agattttttggatgagcagtt 16395
>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840) mRNA, complete cds Length = 870 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 754 ccatctcatcagccggcctgt 734
>gb|AC096592.4| Homo sapiens BAC clone RP11-775M18 from 4, complete sequence Length = 94634 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 19 gtattatttctttcaaagatttttt 43 ||||||||| ||||||||||||||| Sbjct: 62106 gtattatttatttcaaagatttttt 62130
>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840; T9J14.21) mRNA, complete cds Length = 1000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 811 ccatctcatcagccggcctgt 791
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 tattatttctttcaaagattt 40 ||||||||||||||||||||| Sbjct: 419910 tattatttctttcaaagattt 419930
>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like protein, complete cds, clone: RAFL22-32-J16 Length = 468 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 269 ccatctcatcagccggcctgt 249
>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 524 ccatctcatcagccggcctgt 504
>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 744 ccatctcatcagccggcctgt 724
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 73562 ccatctcatcagccggcctgt 73582
>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence Length = 1001 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 ccatctcatcagccggcctgt 479 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AC113058.6| Mus musculus chromosome 6, clone RP23-253C24, complete sequence Length = 248761 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 tatttctttcaaagatttttt 43 ||||||||||||||||||||| Sbjct: 36559 tatttctttcaaagatttttt 36579
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gggtacttacagactccaac 156 |||||||||||||||||||| Sbjct: 126085 gggtacttacagactccaac 126104
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 atgctccatctcatcagccg 473 |||||||||||||||||||| Sbjct: 15240 atgctccatctcatcagccg 15221
>ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea receptor 1 (LOC538996), mRNA Length = 2629 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 acagactccaacaacatcgc 164 |||||||||||||||||||| Sbjct: 1483 acagactccaacaacatcgc 1502
>gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 2758 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 aggagctcttgcctcacatt 360 |||||||||||||||||||| Sbjct: 461 aggagctcttgcctcacatt 480
>emb|CR854931.8| Zebrafish DNA sequence from clone DKEY-30P2 in linkage group 14, complete sequence Length = 203332 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aattcaagctataatcaata 100 |||||||||||||||||||| Sbjct: 84164 aattcaagctataatcaata 84183
>emb|CR854933.8| Zebrafish DNA sequence from clone DKEY-48H17 in linkage group 14, complete sequence Length = 190712 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aattcaagctataatcaata 100 |||||||||||||||||||| Sbjct: 122881 aattcaagctataatcaata 122862
>gb|AC091770.5| Homo sapiens BAC clone RP11-655M5 from 7, complete sequence Length = 93543 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 gctaatctcttgtattatttcttt 31 |||||| ||||||||||||||||| Sbjct: 89185 gctaatatcttgtattatttcttt 89162
>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the GSPT2 gene for G1 to S phase transition 2, a pseudogene similar to part of p30 (nuclear protein p30), a zinc finger protein pseudogene, the 5' end of a variant of the MAGED1 gene for melanoma antigen, family D, 1 and two CpG islands, complete sequence Length = 157110 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gctaatctcttgtattattt 27 |||||||||||||||||||| Sbjct: 10649 gctaatctcttgtattattt 10668
>emb|AL662886.6| Human DNA sequence from clone RP13-339K12 on chromosome X Contains a pseudogene similar to part of p30 (nuclear protein p30) and a CpG island, complete sequence Length = 63451 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gctaatctcttgtattattt 27 |||||||||||||||||||| Sbjct: 17039 gctaatctcttgtattattt 17058
>emb|AL159996.7| Human DNA sequence from clone RP11-401F12 on chromosome 9 Contains the 3' end of a novel gene, complete sequence Length = 188357 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ttattcctccttttcaagtt 74 |||||||||||||||||||| Sbjct: 66468 ttattcctccttttcaagtt 66449
>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains the 5' end of a novel gene, the gene for UC28 protein (UROC28) and a CpG island, complete sequence Length = 129227 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ccacctgaatggcttgcagg 343 |||||||||||||||||||| Sbjct: 80878 ccacctgaatggcttgcagg 80859
>gb|AC159646.2| Mus musculus BAC clone RP23-192K23 from chromosome 12, complete sequence Length = 194901 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 gtttattcctccttttcaagttac 76 ||||||| |||||||||||||||| Sbjct: 74226 gtttatttctccttttcaagttac 74203
>emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 11 Length = 198022 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 tattcctccttttcaagttacata 79 ||||||||||||| |||||||||| Sbjct: 144960 tattcctcctttttaagttacata 144983
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence Length = 129617 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ctgtacttggttgaatcgtc 495 |||||||||||||||||||| Sbjct: 57722 ctgtacttggttgaatcgtc 57703
>gb|AC091639.5| Homo sapiens chromosome 8, clone RP11-61K18, complete sequence Length = 147480 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 agcagtttattcctcctttt 68 |||||||||||||||||||| Sbjct: 87767 agcagtttattcctcctttt 87748
>gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, complete sequence Length = 216870 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcttgcaggagctcttgcct 354 |||||||||||||||||||| Sbjct: 143206 gcttgcaggagctcttgcct 143187
>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence Length = 194322 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 tattatttctttcaaagatttttt 43 |||||||| ||||||||||||||| Sbjct: 130328 tattatttgtttcaaagatttttt 130305
>gb|AC016604.6| Homo sapiens chromosome 5 clone CTD-2150I21, complete sequence Length = 94147 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 tattatttctttcaaagatttttt 43 |||||||||||||||| ||||||| Sbjct: 73525 tattatttctttcaaacatttttt 73502
>gb|AC016635.8| Homo sapiens chromosome 5 clone RP11-313I12, complete sequence Length = 163536 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 tattatttctttcaaagatttttt 43 |||||||||||||||| ||||||| Sbjct: 904 tattatttctttcaaacatttttt 927
>gb|AC090960.3| Homo sapiens chromosome 3 clone RP11-83E7 map 3p, complete sequence Length = 176744 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ttattcatgggtacttacag 148 |||||||||||||||||||| Sbjct: 48384 ttattcatgggtacttacag 48365
>ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tacagactccaacaacatcg 163 |||||||||||||||||||| Sbjct: 633 tacagactccaacaacatcg 652
>emb|BX548166.7| Zebrafish DNA sequence from clone CH211-280G5 in linkage group 10, complete sequence Length = 166449 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aattcaagctataatcaata 100 |||||||||||||||||||| Sbjct: 45541 aattcaagctataatcaata 45560
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 9 ctaatctcttgtattatttctttcaaag 36 ||||||||||| ||||||| |||||||| Sbjct: 7867531 ctaatctcttggattatttttttcaaag 7867504
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gggtacttacagactccaac 156 |||||||||||||||||||| Sbjct: 16334732 gggtacttacagactccaac 16334751
>gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete sequence Length = 152843 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 agcagtttattcctcctttt 68 |||||||||||||||||||| Sbjct: 108886 agcagtttattcctcctttt 108905
>gb|AC124989.7| Mus musculus chromosome 1, clone RP24-404O8, complete sequence Length = 184453 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tttcaaagattttttggatg 48 |||||||||||||||||||| Sbjct: 163858 tttcaaagattttttggatg 163839
>dbj|AP005517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0090H20 Length = 132628 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 9 ctaatctcttgtattatttctttcaaag 36 ||||||||||| ||||||| |||||||| Sbjct: 98818 ctaatctcttggattatttttttcaaag 98791
>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0038P10 Length = 148527 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 9 ctaatctcttgtattatttctttcaaag 36 ||||||||||| ||||||| |||||||| Sbjct: 57422 ctaatctcttggattatttttttcaaag 57395
>dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full insert sequence Length = 4617 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gggtacttacagactccaac 156 |||||||||||||||||||| Sbjct: 2472 gggtacttacagactccaac 2453
>dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full insert sequence Length = 3424 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gggtacttacagactccaac 156 |||||||||||||||||||| Sbjct: 2277 gggtacttacagactccaac 2258
>gb|AC133079.4| Mus musculus BAC clone RP24-468O18 from 12, complete sequence Length = 176177 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 gtttattcctccttttcaagttac 76 ||||||| |||||||||||||||| Sbjct: 51408 gtttatttctccttttcaagttac 51431
>gb|AF076274.1|T27D20 Arabidopsis thaliana BAC T27D20 Length = 80446 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tattcctccttttcaagttacata 79 ||||||||||||| |||||||||| Sbjct: 52721 tattcctcctttttaagttacata 52698
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 atgctccatctcatcagccg 473 |||||||||||||||||||| Sbjct: 1911 atgctccatctcatcagccg 1930
>emb|AL929129.6| Mouse DNA sequence from clone RP23-238P9 on chromosome 2, complete sequence Length = 139558 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taatctcttgtattatttct 29 |||||||||||||||||||| Sbjct: 40004 taatctcttgtattatttct 39985
>gb|AC115893.10| Mus musculus chromosome 1, clone RP24-442I13, complete sequence Length = 153053 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tttcaaagattttttggatg 48 |||||||||||||||||||| Sbjct: 61046 tttcaaagattttttggatg 61027 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,703,342 Number of Sequences: 3902068 Number of extensions: 4703342 Number of successful extensions: 93045 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92842 Number of HSP's gapped (non-prelim): 195 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
