ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type I... 29 5.8
2ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells... 29 5.8
3HXK2_RAT (P27881) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II)... 28 9.9
4HXK2_MOUSE (O08528) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type I... 28 9.9

>HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)|
           (Muscle form hexokinase)
          Length = 917

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
 Frame = -1

Query: 412 QVRNDAKFYPTEEM---GNSYFDHYPDLVEQVTNNTFSKGLALMRGFFFWL---QNSAHE 251
           ++ N     P E M   G+  FDH    +         KG++L  GF F     QNS  E
Sbjct: 554 EMHNKIYAIPQEVMHGTGDELFDHIVQCIADFLEYMGMKGVSLPLGFTFSFPCQQNSLDE 613

Query: 250 DQFRPWTDDLK-----DQDVIPLM 194
                WT   K      +DV+ L+
Sbjct: 614 SILLKWTKGFKASGCEGEDVVTLL 637



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>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog|
            (Xeroderma pigmentosum group G-complementing protein
            homolog)
          Length = 1196

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -1

Query: 373  MGNSYFDHYPDL----VEQVTNNTFSKGLALMRGFFFWLQNSAHEDQFRPWTDDLKDQDV 206
            +G+ Y +  P +      ++ N    +GL  +  F  W   +  + + RP  +D K +  
Sbjct: 891  LGSDYTEGIPTVGYVSAMEILNEFPGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKK 950

Query: 205  IPLMDLDYAFP 173
            + L+DL  +FP
Sbjct: 951  LRLLDLQQSFP 961



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>HXK2_RAT (P27881) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)|
          Length = 917

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
 Frame = -1

Query: 421 KLRQVRNDAKFY--PTEEM---GNSYFDHYPDLVEQVTNNTFSKGLALMRGFFFWL---Q 266
           K R V    K Y  P E M   G   FDH    +         KG++L  GF F     Q
Sbjct: 549 KRRGVEMHNKIYSIPQEVMHGTGEELFDHIVQCIADFLEYMGMKGVSLPLGFTFSFPCQQ 608

Query: 265 NSAHEDQFRPWTDDLK-----DQDVIPLM 194
           NS  +     WT   K      +DV+ L+
Sbjct: 609 NSLDQSILLKWTKGFKASGCEGEDVVTLL 637



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>HXK2_MOUSE (O08528) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)|
          Length = 917

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
 Frame = -1

Query: 421 KLRQVRNDAKFY--PTEEM---GNSYFDHYPDLVEQVTNNTFSKGLALMRGFFFWL---Q 266
           K R V    K Y  P E M   G   FDH    +         KG++L  GF F     Q
Sbjct: 549 KRRGVEMHNKIYSIPQEVMHGTGEELFDHIVQCIADFLEYMGMKGVSLPLGFTFSFPCQQ 608

Query: 265 NSAHEDQFRPWTDDLK-----DQDVIPLM 194
           NS  +     WT   K      +DV+ L+
Sbjct: 609 NSLDQSILLKWTKGFKASGCEGEDVVTLL 637


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,601,307
Number of Sequences: 219361
Number of extensions: 1297408
Number of successful extensions: 2678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2678
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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