ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 996 Score = 165 bits (83), Expect = 1e-37 Identities = 176/207 (85%) Strand = Plus / Minus Query: 233 ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 292 |||||| |||||||| || || |||||| |||||||||||||||||||||| |||||||| Sbjct: 951 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 892 Query: 293 caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 352 || ||||||||| || | |||| || ||| ||||||| || || |||||||||||||| Sbjct: 891 cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 832 Query: 353 atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 412 |||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||||||||| Sbjct: 831 atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 772 Query: 413 tcgcaacttcactaaaggagtacgaat 439 || || || ||||| || |||||||| Sbjct: 771 ccgtaattttactaatggtgtacgaat 745
>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full insert sequence Length = 1351 Score = 165 bits (83), Expect = 1e-37 Identities = 176/207 (85%) Strand = Plus / Minus Query: 233 ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 292 |||||| |||||||| || || |||||| |||||||||||||||||||||| |||||||| Sbjct: 1013 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 954 Query: 293 caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 352 || ||||||||| || | |||| || ||| ||||||| || || |||||||||||||| Sbjct: 953 cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 894 Query: 353 atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 412 |||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||||||||| Sbjct: 893 atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 834 Query: 413 tcgcaacttcactaaaggagtacgaat 439 || || || ||||| || |||||||| Sbjct: 833 ccgtaattttactaatggtgtacgaat 807
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 89.7 bits (45), Expect = 7e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 343 ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 402 |||||||||||||||| |||||||| ||||| |||| ||||||||||| ||| |||||| Sbjct: 21772 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 21831 Query: 403 tgcgcacctgtcgcaacttcactaaaggagtacgaat 439 |||||||||| || || || ||||| || |||||||| Sbjct: 21832 tgcgcacctgccgtaattttactaatggtgtacgaat 21868 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 266 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 304 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 20623 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 20661
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 89.7 bits (45), Expect = 7e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 343 ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 402 |||||||||||||||| |||||||| ||||| |||| ||||||||||| ||| |||||| Sbjct: 26954072 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 26954131 Query: 403 tgcgcacctgtcgcaacttcactaaaggagtacgaat 439 |||||||||| || || || ||||| || |||||||| Sbjct: 26954132 tgcgcacctgccgtaattttactaatggtgtacgaat 26954168 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 266 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 304 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 26952923 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 26952961
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06, complete sequence Length = 174570 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 266 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 304 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 173983 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 174021
>ref|XM_474925.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Minus Query: 326 aacttgttcgacaagatctgggtaatgatcaaaatatga 364 |||||||| | |||||||||||||| |||||||||||| Sbjct: 1224 aacttgtttggcaagatctgggtaacaatcaaaatatga 1186
>emb|AL445190.9| Human DNA sequence from clone RP11-349J5 on chromosome 6 Contains the 5' end of the ALDH8A1 gene for aldehyde dehydrogenase 8 family, member A1, a novel gene and the 3' end of the HBS1L gene for HBS1-like (S. cerevisiae) (KIAA1038, EFRS), complete sequence Length = 65249 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Plus Query: 78 atatataaaatgataaaaatcaaatat 104 ||||||||||| ||||||||||||||| Sbjct: 34636 atatataaaataataaaaatcaaatat 34662
>dbj|AK102514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095J08, full insert sequence Length = 1669 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Minus Query: 326 aacttgttcgacaagatctgggtaatgatcaaaatatga 364 |||||||| | |||||||||||||| |||||||||||| Sbjct: 1253 aacttgtttggcaagatctgggtaacaatcaaaatatga 1215
>emb|CR628394.17| Zebrafish DNA sequence from clone DKEY-204A24 in linkage group 19, complete sequence Length = 242800 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 tggaatatatacatttattctcc 25 ||||||||||||||||||||||| Sbjct: 153910 tggaatatatacatttattctcc 153932
>ref|NM_100004.1| Arabidopsis thaliana ATP binding / galactokinase/ kinase/ phosphotransferase, alcohol group as acceptor AT1G01220 mRNA, complete cds Length = 3168 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 taaacccttggaaaaggtattgtttg 324 |||||||||||| ||||||||||||| Sbjct: 1470 taaacccttggagaaggtattgtttg 1495
>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence Length = 157606 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 ctcaatatataaaatgataaaaatca 99 ||||||||||||| |||||||||||| Sbjct: 58657 ctcaatatataaagtgataaaaatca 58632
>gb|AC093684.4| Homo sapiens BAC clone RP11-681B22 from 2, complete sequence Length = 160142 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 84 aaaatgataaaaatcaaatatt 105 |||||||||||||||||||||| Sbjct: 65643 aaaatgataaaaatcaaatatt 65664
>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence Length = 104001 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 299 taaacccttggaaaaggtattgtttg 324 |||||||||||| ||||||||||||| Sbjct: 34603 taaacccttggagaaggtattgtttg 34628
>gb|AE001384.1| Plasmodium falciparum 3D7 chromosome 2 section 21 of 73 of the complete sequence Length = 17839 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 aatatataaaatgataaaaat 97 ||||||||||||||||||||| Sbjct: 256 aatatataaaatgataaaaat 236
>emb|CR388131.10| Zebrafish DNA sequence from clone DKEY-114G9 in linkage group 1, complete sequence Length = 169443 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ataaaatgataaaaatcaaat 102 ||||||||||||||||||||| Sbjct: 148533 ataaaatgataaaaatcaaat 148553
>gb|AC141430.3| Mus musculus BAC clone RP23-95O14 from chromosome 5, complete sequence Length = 208771 Score = 42.1 bits (21), Expect = 1.5 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 76 caatatataaaa-tgataaaaatcaaata 103 |||||||||||| |||||||||||||||| Sbjct: 111388 caatatataaaaatgataaaaatcaaata 111360
>gb|AC150446.8| Medicago truncatula clone mth2-101n14, complete sequence Length = 109162 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 taaaatgataaaaatcaaatattct 107 ||||||||| ||||||||||||||| Sbjct: 29786 taaaatgatcaaaatcaaatattct 29810
>gb|AC125283.1| Homo sapiens chromosome 2 clone RP11-268N9, complete sequence Length = 78812 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 aaaatatgaattgcccatctc 376 ||||||||||||||||||||| Sbjct: 74005 aaaatatgaattgcccatctc 73985
>dbj|AK055000.1| Homo sapiens cDNA FLJ30438 fis, clone BRACE2009053 Length = 1800 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 tcaatatataaaatgataaaaatca 99 ||||||||| ||||||||||||||| Sbjct: 1551 tcaatatattaaatgataaaaatca 1575
>gb|AC104827.4| Homo sapiens BAC clone RP11-778J15 from 4, complete sequence Length = 157262 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 tatataaaatgataaaaatca 99 ||||||||||||||||||||| Sbjct: 96016 tatataaaatgataaaaatca 95996
>gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147239 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aattatttccacaaaagagaa 155 ||||||||||||||||||||| Sbjct: 62508 aattatttccacaaaagagaa 62488
>gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, complete sequence Length = 70533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 tgtgcactattctgcaaccag 275 ||||||||||||||||||||| Sbjct: 37858 tgtgcactattctgcaaccag 37838
>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence Length = 201464 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 75 tcaatatataaaatgataaaaatca 99 ||||||||| ||||||||||||||| Sbjct: 47198 tcaatatattaaatgataaaaatca 47174
>gb|AC107211.5| Homo sapiens BAC clone RP11-268N9 from 2, complete sequence Length = 78812 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 aaaatatgaattgcccatctc 376 ||||||||||||||||||||| Sbjct: 74005 aaaatatgaattgcccatctc 73985
>emb|CR388379.15| Zebrafish DNA sequence from clone CH211-129O15, complete sequence Length = 149807 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 tatataaaatgataaaaatca 99 ||||||||||||||||||||| Sbjct: 142154 tatataaaatgataaaaatca 142134
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 aacatcttgatctttcagat 225 |||||||||||||||||||| Sbjct: 170094 aacatcttgatctttcagat 170113
>gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosome 16, complete sequence Length = 193398 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tttattctcccaagagaaagagca 39 ||||||||||||||||||| |||| Sbjct: 170145 tttattctcccaagagaaacagca 170168
>gb|AC148017.3| Mus musculus BAC clone RP23-56O18 from chromosome 18, complete sequence Length = 152497 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aatatataaaatgataaaaa 96 |||||||||||||||||||| Sbjct: 79659 aatatataaaatgataaaaa 79640
>gb|AC147269.3| Mus musculus BAC clone RP24-281E6 from chromosome 18, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 cacaaaagagaagatgagtgaatg 167 ||||||||| |||||||||||||| Sbjct: 35983 cacaaaagaaaagatgagtgaatg 36006
>gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosome 18, complete sequence Length = 182065 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 cacaaaagagaagatgagtgaatg 167 ||||||||| |||||||||||||| Sbjct: 174172 cacaaaagaaaagatgagtgaatg 174149
>gb|AC140982.2| Mus musculus BAC clone RP23-171L7 from chromosome 16, complete sequence Length = 208232 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tttattctcccaagagaaagagca 39 ||||||||||||||||||| |||| Sbjct: 50566 tttattctcccaagagaaacagca 50589
>gb|AC140109.4| Mus musculus BAC clone RP24-156A17 from chromosome 3, complete sequence Length = 130716 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tatataaaatgataaaaatc 98 |||||||||||||||||||| Sbjct: 95408 tatataaaatgataaaaatc 95427
>gb|AC130843.3| Mus musculus BAC clone RP24-501N9 from chromosome 1, complete sequence Length = 141921 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 aaatcaaatattctgtactgagaa 117 |||||||||||| ||||||||||| Sbjct: 23610 aaatcaaatattttgtactgagaa 23587
>ref|XM_843498.1| PREDICTED: Canis familiaris hypothetical LOC482730, transcript variant 2 (LOC482730), mRNA Length = 3724 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ttatttccacaaaagagaag 156 |||||||||||||||||||| Sbjct: 3177 ttatttccacaaaagagaag 3158
>gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156390 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 atatatacatttattctccc 26 |||||||||||||||||||| Sbjct: 138008 atatatacatttattctccc 137989
>ref|XM_816788.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511277.130) partial mRNA Length = 2778 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gatctttcagatcatctgtc 233 |||||||||||||||||||| Sbjct: 168 gatctttcagatcatctgtc 187
>emb|BX927368.13| Zebrafish DNA sequence from clone CH211-15J16 in linkage group 23, complete sequence Length = 176438 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aatatataaaatgataaaaa 96 |||||||||||||||||||| Sbjct: 46954 aatatataaaatgataaaaa 46973
>ref|XM_798247.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053464807.20) partial mRNA Length = 1863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gatctttcagatcatctgtc 233 |||||||||||||||||||| Sbjct: 93 gatctttcagatcatctgtc 112
>ref|XM_721059.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00666) partial mRNA Length = 861 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tcaaaatatgaattgcccat 373 |||||||||||||||||||| Sbjct: 470 tcaaaatatgaattgcccat 451
>gb|AY391275.1| Aeromonas hydrophila clone PA88 putative guanine nucleotide-binding protein Rab1A and putative pancortin-3 genes, complete cds; and unknown genes Length = 3711 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaatgataaaaatcaaata 103 |||||||||||||||||||| Sbjct: 2412 aaaatgataaaaatcaaata 2393
>gb|AC074214.8| Homo sapiens BAC clone RP11-520A8 from 7, complete sequence Length = 43276 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 atataaaatgataaaaatcaaata 103 |||||||||||| ||||||||||| Sbjct: 1103 atataaaatgattaaaatcaaata 1080
>gb|AC092444.2| Homo sapiens BAC clone RP11-633A20 from 7, complete sequence Length = 7192 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 atataaaatgataaaaatcaaata 103 |||||||||||| ||||||||||| Sbjct: 898 atataaaatgattaaaatcaaata 921
>gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, complete sequence Length = 160687 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 gtaatgatcaaaatatgaat 366 |||||||||||||||||||| Sbjct: 33828 gtaatgatcaaaatatgaat 33809
>gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, complete sequence Length = 170622 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 aaatcaaatattctgtactgagaa 117 |||||||||||| ||||||||||| Sbjct: 32210 aaatcaaatattttgtactgagaa 32233
>emb|AL807761.8| Human DNA sequence from clone RP11-196I18 on chromosome 9 Contains the 5' end of a novel gene (FLJ40387), a novel pseudogene, a MMRP19 pseudogene and a novel gene, complete sequence Length = 103861 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 atgagtgaatgaactaaggaaatg 180 ||||||||||||||||| |||||| Sbjct: 87903 atgagtgaatgaactaatgaaatg 87926
>emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chromosome 6 Contains a ribosomal protein L5 (RPL5) pseudogene, complete sequence Length = 162540 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 gaataacatcttgatctttcagat 225 ||||||||||||||| |||||||| Sbjct: 63931 gaataacatcttgatatttcagat 63954
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaatgataaaaatcaaata 103 |||||||||||||||||||| Sbjct: 530237 aaaatgataaaaatcaaata 530218
>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence Length = 209458 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 taaaatgataaaaatcaaat 102 |||||||||||||||||||| Sbjct: 129562 taaaatgataaaaatcaaat 129543
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5 Length = 341050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tataaaatgataaaaatcaa 100 |||||||||||||||||||| Sbjct: 257735 tataaaatgataaaaatcaa 257754
>emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chromosome 11 Contains a novel gene, complete sequence Length = 154687 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tattctgcaaccagaagaaa 281 |||||||||||||||||||| Sbjct: 129619 tattctgcaaccagaagaaa 129638
>gb|AC157932.8| Mus musculus chromosome 5, clone RP24-188B2, complete sequence Length = 168685 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 aaaaatcaaatattctgtactgag 115 ||||| |||||||||||||||||| Sbjct: 9592 aaaaaacaaatattctgtactgag 9615
>emb|BX648652.1|HSM808803 Homo sapiens mRNA; cDNA DKFZp686J06117 (from clone DKFZp686J06117) Length = 3633 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gtaatgatcaaaatatgaat 366 |||||||||||||||||||| Sbjct: 1888 gtaatgatcaaaatatgaat 1907
>gb|AC092851.9| Homo sapiens 12 BAC RP11-459D22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 atatataaaatgataaaaat 97 |||||||||||||||||||| Sbjct: 111207 atatataaaatgataaaaat 111226
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 aagatctgggtaatgatcaa 357 |||||||||||||||||||| Sbjct: 58508 aagatctgggtaatgatcaa 58527
>dbj|AK149006.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120474L18 product:unclassifiable, full insert sequence Length = 2767 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 aaatcaaatattctgtactgagaa 117 |||||||||||| ||||||||||| Sbjct: 1397 aaatcaaatattttgtactgagaa 1420
>ref|NM_152754.2| Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D (SEMA3D), mRNA Length = 6276 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gtaatgatcaaaatatgaat 366 |||||||||||||||||||| Sbjct: 4531 gtaatgatcaaaatatgaat 4550
>ref|XM_396619.2| PREDICTED: Apis mellifera similar to ENSANGP00000017978 (LOC413168), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aaaatgataaaaatcaaata 103 |||||||||||||||||||| Sbjct: 23 aaaatgataaaaatcaaata 42
>gb|AC110807.3| Homo sapiens BAC clone RP11-745F5 from 2, complete sequence Length = 124489 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ggaatatatacatttattct 23 |||||||||||||||||||| Sbjct: 103526 ggaatatatacatttattct 103507
>gb|AC104395.4| Homo sapiens BAC clone RP11-488M9 from 2, complete sequence Length = 114032 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 acacaagtagactgctccag 59 |||||||||||||||||||| Sbjct: 36343 acacaagtagactgctccag 36362
>gb|AC068195.6| Homo sapiens BAC clone RP11-114B24 from 2, complete sequence Length = 178147 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aatatatacatttattctcc 25 |||||||||||||||||||| Sbjct: 36656 aatatatacatttattctcc 36675
>gb|AC068537.5| Homo sapiens BAC clone RP11-138C13 from 2, complete sequence Length = 133787 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ggaatatatacatttattct 23 |||||||||||||||||||| Sbjct: 79019 ggaatatatacatttattct 79000
>emb|BX296551.4| Zebrafish DNA sequence from clone CH211-224L10 in linkage group 23, complete sequence Length = 180447 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 aatatataaaatgataaaaa 96 |||||||||||||||||||| Sbjct: 117994 aatatataaaatgataaaaa 118013
>gb|AC171009.3| Gallus gallus BAC clone CH261-146H18 from chromosome ul, complete sequence Length = 197416 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 aaatattctgtactgagaatggtt 122 |||||| ||||||||||||||||| Sbjct: 134763 aaatatcctgtactgagaatggtt 134740
>emb|BX537130.6| Zebrafish DNA sequence from clone DKEY-104I23 in linkage group 20, complete sequence Length = 188776 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aaaggtattgtttgtaactt 330 |||||||||||||||||||| Sbjct: 85691 aaaggtattgtttgtaactt 85710
>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete sequences Length = 198333 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggaatatatacatttattct 23 |||||||||||||||||||| Sbjct: 66157 ggaatatatacatttattct 66176
>emb|AL953844.7| Zebrafish DNA sequence from clone DKEY-29G23 in linkage group 15, complete sequence Length = 194120 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atatataaaatgataaaaat 97 |||||||||||||||||||| Sbjct: 26447 atatataaaatgataaaaat 26428
>emb|CR762486.12| Zebrafish DNA sequence from clone DKEY-264O9 in linkage group 3, complete sequence Length = 82649 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 ataaaaatcaaatattctgtactg 113 |||||||| ||||||||||||||| Sbjct: 42823 ataaaaataaaatattctgtactg 42846
>dbj|AP003127.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-710G6, complete sequences Length = 161238 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gataaaaatcaaatattctg 108 |||||||||||||||||||| Sbjct: 89791 gataaaaatcaaatattctg 89810
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aatatataaaatgataaaaa 96 |||||||||||||||||||| Sbjct: 5170168 aatatataaaatgataaaaa 5170149
>emb|AM180622.1| Pichia acaciae plasmid pPac1-1 Length = 12646 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aaaatgataaaaatcaaata 103 |||||||||||||||||||| Sbjct: 330 aaaatgataaaaatcaaata 311
>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence Length = 188353 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tatataaaatgataaaaatc 98 |||||||||||||||||||| Sbjct: 3599 tatataaaatgataaaaatc 3618
>gb|AC139942.4| Mus musculus BAC clone RP23-447N11 from 3, complete sequence Length = 186057 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tatataaaatgataaaaatc 98 |||||||||||||||||||| Sbjct: 181716 tatataaaatgataaaaatc 181735
>emb|AL683854.20| Mouse DNA sequence from clone RP23-237K13 on chromosome 4, complete sequence Length = 234724 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 77 aatatataaaatgataaaaatcaaatat 104 |||||| |||| |||||||||||||||| Sbjct: 89062 aatataaaaaaagataaaaatcaaatat 89089
>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete sequence Length = 249536 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atatataaaatgataaaaat 97 |||||||||||||||||||| Sbjct: 202484 atatataaaatgataaaaat 202465
>gb|AC118599.24| Mus musculus chromosome 5, clone RP23-459G5, complete sequence Length = 194003 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 aaaaatcaaatattctgtactgag 115 ||||| |||||||||||||||||| Sbjct: 134727 aaaaaacaaatattctgtactgag 134750
>emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 278H24 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 150493 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tattctgcaaccagaagaaa 281 |||||||||||||||||||| Sbjct: 56541 tattctgcaaccagaagaaa 56522 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,332,261 Number of Sequences: 3902068 Number of extensions: 5332261 Number of successful extensions: 123004 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122776 Number of HSP's gapped (non-prelim): 226 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
