ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.3
2gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.3
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
4gb|AC117949.5| Mus musculus BAC clone RP23-197M6 from chromosome... 38 5.2
5gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1... 38 5.2
6gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, compl... 38 5.2
7gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, compl... 38 5.2

>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 32    gagcaaaggtaaactgttcacattattt 59
             ||||||||||||||||||  ||||||||
Sbjct: 10560 gagcaaaggtaaactgttttcattattt 10587



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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 32     gagcaaaggtaaactgttcacattattt 59
              ||||||||||||||||||  ||||||||
Sbjct: 110545 gagcaaaggtaaactgttttcattattt 110572



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 32      gagcaaaggtaaactgttcacattattt 59
               ||||||||||||||||||  ||||||||
Sbjct: 6062991 gagcaaaggtaaactgttttcattattt 6063018



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>gb|AC117949.5| Mus musculus BAC clone RP23-197M6 from chromosome 18, complete sequence
          Length = 196445

 Score = 38.2 bits (19), Expect = 5.2
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 10     caaaactaacaacataacagacgagcaaagg 40
              ||||||||||||||||| | || ||||||||
Sbjct: 136208 caaaactaacaacataataaacaagcaaagg 136238



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>gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1, complete sequence
          Length = 122146

 Score = 38.2 bits (19), Expect = 5.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 7      gcccaaaactaacaacataacag 29
              |||||||||||||||| ||||||
Sbjct: 115179 gcccaaaactaacaacctaacag 115201



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>gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, complete sequence
          Length = 132033

 Score = 38.2 bits (19), Expect = 5.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      gcccaaaactaacaacataacag 29
              |||||||||||||||| ||||||
Sbjct: 108592 gcccaaaactaacaacctaacag 108570



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>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence
          Length = 210193

 Score = 38.2 bits (19), Expect = 5.2
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                             
Query: 10     caaaactaacaacataacagacgagcaaagg 40
              ||||||||||||||||| | || ||||||||
Sbjct: 209553 caaaactaacaacataataaacaagcaaagg 209523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 912,863
Number of Sequences: 3902068
Number of extensions: 912863
Number of successful extensions: 66131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66109
Number of HSP's gapped (non-prelim): 22
length of query: 114
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 93
effective length of database: 17,151,101,840
effective search space: 1595052471120
effective search space used: 1595052471120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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