Clone Information

BLAST Search Result

Clone Name	rbart48f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF372987.1\| Zea mays legumin-like protein (cl2-1) mRNA, compl...	325	9e-86
2	gb\|BT017992.1\| Zea mays clone EL01N0526C06.c mRNA sequence	285	7e-74
3	gb\|AF372988.1\| Zea mays legumin-like protein (cl2-2) mRNA, compl...	285	7e-74
4	gb\|AY107295.1\| Zea mays PCO117817 mRNA sequence	278	2e-71
5	dbj\|AK121775.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	246	6e-62
6	dbj\|AK058320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	246	6e-62
7	ref\|NM_189500.1\| Oryza sativa (japonica cultivar-group), predic...	202	9e-49
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	202	9e-49
9	dbj\|AP003627.3\| Oryza sativa (japonica cultivar-group) genomic D...	202	9e-49
10	dbj\|AP003228.3\| Oryza sativa (japonica cultivar-group) genomic D...	202	9e-49
11	dbj\|AK061022.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	202	9e-49
12	gb\|AC078977.6\| Oryza sativa (japonica cultivar-group) chromosome...	168	1e-38
13	gb\|AC108504.2\| Oryza sativa (japonica cultivar-group) chromosome...	168	1e-38
14	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	168	1e-38
15	gb\|AY183450.1\| Zea mays legumin-like protein mRNA, complete cds	129	1e-26
16	gb\|AC149578.15\| Medicago truncatula clone mth2-94f23, complete s...	50	0.008
17	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	46	0.12
18	ref\|XM_799919.1\| Trypanosoma cruzi strain CL Brener PIF1 helicas...	42	1.8
19	ref\|XM_809555.1\| Trypanosoma cruzi strain CL Brener PIF1 helicas...	42	1.8
20	emb\|Y18523.4\|ASY18523 Actinoplanes sp. SE50/110 complete acarbos...	42	1.8
21	ref\|XM_450358.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.3
22	ref\|XM_472092.1\| Oryza sativa (japonica cultivar-group), predic...	40	7.3
23	gb\|AC118289.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	7.3
24	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	7.3
25	gb\|AC142284.1\| Pan troglodytes BAC clone RP43-163P11 from 7, com...	40	7.3
26	emb\|CR387930.11\| Zebrafish DNA sequence from clone CH211-69P15 i...	40	7.3
27	emb\|AL590644.14\| Human DNA sequence from clone RP11-380J14 on ch...	40	7.3
28	emb\|AL023584.1\|HS67K17 Human DNA sequence from clone RP1-67K17 o...	40	7.3
29	emb\|X02570.1\|SPDEVG Flesh fly gene for 25-kDa protein	40	7.3
30	gb\|AC078985.14\| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Canc...	40	7.3
31	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	40	7.3
32	gb\|AC004886.1\| Homo sapiens PAC clone RP4-784G16 from 7, complet...	40	7.3
33	emb\|AJ549502.2\|HSA549502 Homo sapiens peptidylarginine deiminase...	40	7.3
34	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	40	7.3
35	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
36	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
37	gb\|AC023058.17\|AC023058 Homo sapiens 3 BAC CTB-187G23 (CalTech H...	40	7.3
38	gb\|AC026172.3\|AC026172 Homo sapiens chromosome 3 clone RP11-168L...	40	7.3
39	gb\|AF153836.1\|AF153832S5 Homo sapiens human immunodeficiency vir...	40	7.3
40	dbj\|AP005092.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
41	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	40	7.3
42	dbj\|AP006441.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.3
43	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	40	7.3
44	emb\|AL662974.3\|OSJN00171 Oryza sativa genomic DNA, chromosome 4,...	40	7.3
45	gb\|AC026194.4\| Homo sapiens chromosome 3 clone RP11-45B16 map 3p...	40	7.3
46	gb\|AC018506.5\| Homo sapiens chromosome 3 clone RP11-58B17 map 3p...	40	7.3

>gb|AF372987.1| Zea mays legumin-like protein (cl2-1) mRNA, complete cds
          Length = 1357

 Score =  325 bits (164), Expect = 9e-86
 Identities = 236/260 (90%)
 Strand = Plus / Minus

                                                                        
Query: 273  gcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctccggcgtg 332
            |||||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 1117 gcgaagaagatctccgagtcgagcctcttggaccggaacagcttctccatctccggcgtg 1058

                                                                        
Query: 333  gtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtcttccca 392
            |||||||||||||||| ||||||||||| |||||||||||||||||| || |||||||| 
Sbjct: 1057 gtgttgaacgacgcctgcagcacctccgccgagatggccttccacaccgacgtcttcccg 998

                                                                        
Query: 393  gcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatgccagag 452
            || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || 
Sbjct: 997  gccaggtggctgaagatcgggttgggggtggtgatgatggagaaccactccatgccggac 938

                                                                        
Query: 453  gcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccgccctca 512
            || || ||||||||||| |||||||||||||||||||| |||||||||  ||||||||| 
Sbjct: 937  gcgtcggcgatcttggagacgacgtggaagcggggcacgatgaagaggaagccgccctcg 878

                                
Query: 513  atgcgggtctccagcacgcg 532
            | ||| |||||||| |||||
Sbjct: 877  acgcgcgtctccaggacgcg 858

to top

>gb|BT017992.1| Zea mays clone EL01N0526C06.c mRNA sequence
          Length = 985

 Score =  285 bits (144), Expect = 7e-74
 Identities = 231/260 (88%)
 Strand = Plus / Minus

                                                                       
Query: 273 gcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctccggcgtg 332
           ||||| || ||||| ||||| |||||||| || ||||| ||||||||||||||||| |||
Sbjct: 687 gcgaaaaagatctccgagtcgagcctcttggagcggaacagcttctccatctccggagtg 628

                                                                       
Query: 333 gtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtcttccca 392
           |||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 627 gtgttgaaggacgcctgcagcacctccggcgagatggccttccacaccgacgtcttcccc 568

                                                                       
Query: 393 gcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatgccagag 452
           || ||||||||||| | |||||| |||||||||||||| |||||||||||||| || || 
Sbjct: 567 gccaggtggctgaacaccgggttcggggtggtgatgatggagaaccactccatcccggac 508

                                                                       
Query: 453 gcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccgccctca 512
           || || ||||||||||||||||| |||||||||||||| |||||||||   |||||||| 
Sbjct: 507 gcgtcggcgatcttggacacgacatggaagcggggcacgatgaagagggacccgccctcg 448

                               
Query: 513 atgcgggtctccagcacgcg 532
           ||||||||||||||||||||
Sbjct: 447 atgcgggtctccagcacgcg 428

to top

>gb|AF372988.1| Zea mays legumin-like protein (cl2-2) mRNA, complete cds
          Length = 1401

 Score =  285 bits (144), Expect = 7e-74
 Identities = 231/260 (88%)
 Strand = Plus / Minus

                                                                        
Query: 273  gcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctccggcgtg 332
            ||||| || ||||| ||||| |||||||| || ||||| ||||||||||||||||| |||
Sbjct: 1141 gcgaaaaagatctccgagtcgagcctcttggagcggaacagcttctccatctccggagtg 1082

                                                                        
Query: 333  gtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtcttccca 392
            |||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||| 
Sbjct: 1081 gtgttgaaggacgcctgcagcacctccggcgagatggccttccacaccgacgtcttcccc 1022

                                                                        
Query: 393  gcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatgccagag 452
            || ||||||||||| | |||||| |||||||||||||| |||||||||||||| || || 
Sbjct: 1021 gccaggtggctgaacaccgggttcggggtggtgatgatggagaaccactccatcccggac 962

                                                                        
Query: 453  gcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccgccctca 512
            || || ||||||||||||||||| |||||||||||||| |||||||||   |||||||| 
Sbjct: 961  gcgtcggcgatcttggacacgacatggaagcggggcacgatgaagagggacccgccctcg 902

                                
Query: 513  atgcgggtctccagcacgcg 532
            ||||||||||||||||||||
Sbjct: 901  atgcgggtctccagcacgcg 882

to top

>gb|AY107295.1| Zea mays PCO117817 mRNA sequence
          Length = 1107

 Score =  278 bits (140), Expect = 2e-71
 Identities = 230/260 (88%)
 Strand = Plus / Minus

                                                                       
Query: 273 gcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctccggcgtg 332
           ||||| || ||||| ||||| |||||||| || ||||| ||||||||||||||||| |||
Sbjct: 840 gcgaaaaagatctccgagtcgagcctcttggagcggaacagcttctccatctccggagtg 781

                                                                       
Query: 333 gtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtcttccca 392
           |||||||| ||||||| ||||||||| |||||||||||||||||||| || |||||||| 
Sbjct: 780 gtgttgaaggacgcctgcagcacctcaggcgagatggccttccacaccgacgtcttcccc 721

                                                                       
Query: 393 gcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatgccagag 452
           || ||||||||||| | |||||| |||||||||||||| |||||||||||||| || || 
Sbjct: 720 gccaggtggctgaacaccgggttcggggtggtgatgatggagaaccactccatcccggac 661

                                                                       
Query: 453 gcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccgccctca 512
           || || ||||||||||||||||| |||||||||||||| |||||||||   |||||||| 
Sbjct: 660 gcgtcggcgatcttggacacgacatggaagcggggcacgatgaagagggacccgccctcg 601

                               
Query: 513 atgcgggtctccagcacgcg 532
           ||||||||||||||||||||
Sbjct: 600 atgcgggtctccagcacgcg 581

to top

>dbj|AK121775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092N18, full
            insert sequence
          Length = 1506

 Score =  246 bits (124), Expect = 6e-62
 Identities = 232/268 (86%)
 Strand = Plus / Minus

                                                                        
Query: 265  agttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatct 324
            ||||||| |||||||| ||||| ||||| | ||| || |||||||| |||||||||||||
Sbjct: 1323 agttgggcgcgaagaagatctccgagtcgatccttttggaccggaacagcttctccatct 1264

                                                                        
Query: 325  ccggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagagg 384
            ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 1263 ccggcgtcgcgttgaacgacgcctccagcacctccggcgagatcgccttccacaccgacg 1204

                                                                        
Query: 385  tcttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactcca 444
            ||||||| || ||||| |||||||||||||| || |||||||| || |||||||||| ||
Sbjct: 1203 tcttccccgccaggtgactgaagatcgggtttggtgtggtgataatggagaaccactgca 1144

                                                                        
Query: 445  tgccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgc 504
             ||| ||||| || ||||||||||| ||||||  |||||| ||||| ||||| ||| |||
Sbjct: 1143 ggccggaggcgtcggcgatcttggagacgacgcagaagcgcggcacgatgaacaggttgc 1084

                                        
Query: 505  cgccctcaatgcgggtctccagcacgcg 532
            ||||||| | | |||| |||||||||||
Sbjct: 1083 cgccctcgacgtgggtgtccagcacgcg 1056

to top

>dbj|AK058320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A11, full
            insert sequence
          Length = 1364

 Score =  246 bits (124), Expect = 6e-62
 Identities = 232/268 (86%)
 Strand = Plus / Minus

                                                                        
Query: 265  agttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatct 324
            ||||||| |||||||| ||||| ||||| | ||| || |||||||| |||||||||||||
Sbjct: 1171 agttgggcgcgaagaagatctccgagtcgatccttttggaccggaacagcttctccatct 1112

                                                                        
Query: 325  ccggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagagg 384
            ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 1111 ccggcgtcgcgttgaacgacgcctccagcacctccggcgagatcgccttccacaccgacg 1052

                                                                        
Query: 385  tcttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactcca 444
            ||||||| || ||||| |||||||||||||| || |||||||| || |||||||||| ||
Sbjct: 1051 tcttccccgccaggtgactgaagatcgggtttggtgtggtgataatggagaaccactgca 992

                                                                        
Query: 445  tgccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgc 504
             ||| ||||| || ||||||||||| ||||||  |||||| ||||| ||||| ||| |||
Sbjct: 991  ggccggaggcgtcggcgatcttggagacgacgcagaagcgcggcacgatgaacaggttgc 932

                                        
Query: 505  cgccctcaatgcgggtctccagcacgcg 532
            ||||||| | | |||| |||||||||||
Sbjct: 931  cgccctcgacgtgggtgtccagcacgcg 904

to top

>ref|NM_189500.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1134

 Score =  202 bits (102), Expect = 9e-49
 Identities = 225/266 (84%)
 Strand = Plus / Minus

                                                                        
Query: 267  ttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctcc 326
            |||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 1118 ttgggggcgaagaagatctcggagtcgagcctcttggagcggaagaggttctccatctcc 1059

                                                                        
Query: 327  ggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtc 386
            || ||||||||||| || ||||  |||||  | || |||||||||||||| || ||||||
Sbjct: 1058 ggggtggtgttgaaggaggcctggagcacggcgggggagatggccttccagacggaggtc 999

                                                                        
Query: 387  ttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatg 446
             |||| || ||||||  |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 998  ctcccggcgaggtgggagaagatggggttgggagtggtgatgatggagaaccactccatg 939

                                                                        
Query: 447  ccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccg 506
            || | | | || ||||||||||| ||||||  ||| | ||| || |||||||||| ||| 
Sbjct: 938  ccggtgtcgtcggcgatcttggagacgacgaagaacctggggacgatgaagaggcagcca 879

                                      
Query: 507  ccctcaatgcgggtctccagcacgcg 532
            |||||   ||||||||||||||||||
Sbjct: 878  ccctcggcgcgggtctccagcacgcg 853

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  202 bits (102), Expect = 9e-49
 Identities = 225/266 (84%)
 Strand = Plus / Plus

                                                                            
Query: 267      ttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctcc 326
                |||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 43128896 ttgggggcgaagaagatctcggagtcgagcctcttggagcggaagaggttctccatctcc 43128955

                                                                            
Query: 327      ggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtc 386
                || ||||||||||| || ||||  |||||  | || |||||||||||||| || ||||||
Sbjct: 43128956 ggggtggtgttgaaggaggcctggagcacggcgggggagatggccttccagacggaggtc 43129015

                                                                            
Query: 387      ttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatg 446
                 |||| || ||||||  |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 43129016 ctcccggcgaggtgggagaagatggggttgggagtggtgatgatggagaaccactccatg 43129075

                                                                            
Query: 447      ccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccg 506
                || | | | || ||||||||||| ||||||  ||| | ||| || |||||||||| ||| 
Sbjct: 43129076 ccggtgtcgtcggcgatcttggagacgacgaagaacctggggacgatgaagaggcagcca 43129135

                                          
Query: 507      ccctcaatgcgggtctccagcacgcg 532
                |||||   ||||||||||||||||||
Sbjct: 43129136 ccctcggcgcgggtctccagcacgcg 43129161

to top

>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0459B04
          Length = 142475

 Score =  202 bits (102), Expect = 9e-49
 Identities = 225/266 (84%)
 Strand = Plus / Plus

                                                                          
Query: 267    ttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctcc 326
              |||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 125925 ttgggggcgaagaagatctcggagtcgagcctcttggagcggaagaggttctccatctcc 125984

                                                                          
Query: 327    ggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtc 386
              || ||||||||||| || ||||  |||||  | || |||||||||||||| || ||||||
Sbjct: 125985 ggggtggtgttgaaggaggcctggagcacggcgggggagatggccttccagacggaggtc 126044

                                                                          
Query: 387    ttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatg 446
               |||| || ||||||  |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 126045 ctcccggcgaggtgggagaagatggggttgggagtggtgatgatggagaaccactccatg 126104

                                                                          
Query: 447    ccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccg 506
              || | | | || ||||||||||| ||||||  ||| | ||| || |||||||||| ||| 
Sbjct: 126105 ccggtgtcgtcggcgatcttggagacgacgaagaacctggggacgatgaagaggcagcca 126164

                                        
Query: 507    ccctcaatgcgggtctccagcacgcg 532
              |||||   ||||||||||||||||||
Sbjct: 126165 ccctcggcgcgggtctccagcacgcg 126190

to top

>dbj|AP003228.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0020E09
          Length = 149195

 Score =  202 bits (102), Expect = 9e-49
 Identities = 225/266 (84%)
 Strand = Plus / Plus

                                                                         
Query: 267   ttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctcc 326
             |||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 16351 ttgggggcgaagaagatctcggagtcgagcctcttggagcggaagaggttctccatctcc 16410

                                                                         
Query: 327   ggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtc 386
             || ||||||||||| || ||||  |||||  | || |||||||||||||| || ||||||
Sbjct: 16411 ggggtggtgttgaaggaggcctggagcacggcgggggagatggccttccagacggaggtc 16470

                                                                         
Query: 387   ttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatg 446
              |||| || ||||||  |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 16471 ctcccggcgaggtgggagaagatggggttgggagtggtgatgatggagaaccactccatg 16530

                                                                         
Query: 447   ccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccg 506
             || | | | || ||||||||||| ||||||  ||| | ||| || |||||||||| ||| 
Sbjct: 16531 ccggtgtcgtcggcgatcttggagacgacgaagaacctggggacgatgaagaggcagcca 16590

                                       
Query: 507   ccctcaatgcgggtctccagcacgcg 532
             |||||   ||||||||||||||||||
Sbjct: 16591 ccctcggcgcgggtctccagcacgcg 16616

to top

>dbj|AK061022.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D01, full
            insert sequence
          Length = 1478

 Score =  202 bits (102), Expect = 9e-49
 Identities = 225/266 (84%)
 Strand = Plus / Minus

                                                                        
Query: 267  ttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatctcc 326
            |||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct: 1180 ttgggggcgaagaagatctcggagtcgagcctcttggagcggaagaggttctccatctcc 1121

                                                                        
Query: 327  ggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtc 386
            || ||||||||||| || ||||  |||||  | || |||||||||||||| || ||||||
Sbjct: 1120 ggggtggtgttgaaggaggcctggagcacggcgggggagatggccttccagacggaggtc 1061

                                                                        
Query: 387  ttcccagcaaggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatg 446
             |||| || ||||||  |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 1060 ctcccggcgaggtgggagaagatggggttgggagtggtgatgatggagaaccactccatg 1001

                                                                        
Query: 447  ccagaggcatcagcgatcttggacacgacgtggaagcggggcacaatgaagaggctgccg 506
            || | | | || ||||||||||| ||||||  ||| | ||| || |||||||||| ||| 
Sbjct: 1000 ccggtgtcgtcggcgatcttggagacgacgaagaacctggggacgatgaagaggcagcca 941

                                      
Query: 507  ccctcaatgcgggtctccagcacgcg 532
            |||||   ||||||||||||||||||
Sbjct: 940  ccctcggcgcgggtctccagcacgcg 915

to top

>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                         
Query: 265   agttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatct 324
             ||||||| |||||||| ||||| ||||| | ||| || |||||||| |||||||||||||
Sbjct: 46438 agttgggcgcgaagaagatctccgagtcgatccttttggaccggaacagcttctccatct 46497

                                                                         
Query: 325   ccggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagagg 384
             ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 46498 ccggcgtcgcgttgaacgacgcctccagcacctccggcgagatcgccttccacaccgacg 46557

                                          
Query: 385   tcttcccagcaaggtggctgaagatcggg 413
             ||||||| || ||||| ||||||||||||
Sbjct: 46558 tcttccccgccaggtgactgaagatcggg 46586



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                         
Query: 420   gtggtgatgatagagaaccactccatgccagaggcatcagcgatcttggacacgacgtgg 479
             |||||||| || |||||||||| || ||| ||||| || ||||||||||| ||||||  |
Sbjct: 46868 gtggtgataatggagaaccactgcaggccggaggcgtcggcgatcttggagacgacgcag 46927

                                                                  
Query: 480   aagcggggcacaatgaagaggctgccgccctcaatgcgggtctccagcacgcg 532
             ||||| ||||| ||||| ||| |||||||||| | | |||| |||||||||||
Sbjct: 46928 aagcgcggcacgatgaacaggttgccgccctcgacgtgggtgtccagcacgcg 46980

to top

>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10,
              complete sequence
          Length = 140282

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                          
Query: 265    agttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatct 324
              ||||||| |||||||| ||||| ||||| | ||| || |||||||| |||||||||||||
Sbjct: 114457 agttgggcgcgaagaagatctccgagtcgatccttttggaccggaacagcttctccatct 114516

                                                                          
Query: 325    ccggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagagg 384
              ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 114517 ccggcgtcgcgttgaacgacgcctccagcacctccggcgagatcgccttccacaccgacg 114576

                                           
Query: 385    tcttcccagcaaggtggctgaagatcggg 413
              ||||||| || ||||| ||||||||||||
Sbjct: 114577 tcttccccgccaggtgactgaagatcggg 114605



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                          
Query: 420    gtggtgatgatagagaaccactccatgccagaggcatcagcgatcttggacacgacgtgg 479
              |||||||| || |||||||||| || ||| ||||| || ||||||||||| ||||||  |
Sbjct: 114887 gtggtgataatggagaaccactgcaggccggaggcgtcggcgatcttggagacgacgcag 114946

                                                                   
Query: 480    aagcggggcacaatgaagaggctgccgccctcaatgcgggtctccagcacgcg 532
              ||||| ||||| ||||| ||| |||||||||| | | |||| |||||||||||
Sbjct: 114947 aagcgcggcacgatgaacaggttgccgccctcgacgtgggtgtccagcacgcg 114999

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  168 bits (85), Expect = 1e-38
 Identities = 133/149 (89%)
 Strand = Plus / Plus

                                                                          
Query: 265    agttgggggcgaagaaaatctcggagtccagcctcttagaccggaagagcttctccatct 324
              ||||||| |||||||| ||||| ||||| | ||| || |||||||| |||||||||||||
Sbjct: 842015 agttgggcgcgaagaagatctccgagtcgatccttttggaccggaacagcttctccatct 842074

                                                                          
Query: 325    ccggcgtggtgttgaacgacgcctccagcacctccggcgagatggccttccacacagagg 384
              ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct: 842075 ccggcgtcgcgttgaacgacgcctccagcacctccggcgagatcgccttccacaccgacg 842134

                                           
Query: 385    tcttcccagcaaggtggctgaagatcggg 413
              ||||||| || ||||| ||||||||||||
Sbjct: 842135 tcttccccgccaggtgactgaagatcggg 842163



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                          
Query: 420    gtggtgatgatagagaaccactccatgccagaggcatcagcgatcttggacacgacgtgg 479
              |||||||| || |||||||||| || ||| ||||| || ||||||||||| ||||||  |
Sbjct: 842445 gtggtgataatggagaaccactgcaggccggaggcgtcggcgatcttggagacgacgcag 842504

                                                                   
Query: 480    aagcggggcacaatgaagaggctgccgccctcaatgcgggtctccagcacgcg 532
              ||||| ||||| ||||| ||| |||||||||| | | |||| |||||||||||
Sbjct: 842505 aagcgcggcacgatgaacaggttgccgccctcgacgtgggtgtccagcacgcg 842557



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      agcttctccatctccggcgt 331
                ||||||||||||||||||||
Sbjct: 23634857 agcttctccatctccggcgt 23634838

to top

>gb|AY183450.1| Zea mays legumin-like protein mRNA, complete cds
          Length = 1330

 Score =  129 bits (65), Expect = 1e-26
 Identities = 146/173 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  aagaaaatctcggagtccagcctcttagaccggaagagcttctccatctccggcgtggtg 335
            ||||| ||||| ||||| ||||||||    ||||| ||||||||||||||||||||||||
Sbjct: 1137 aagaagatctccgagtcaagcctcttgctacggaacagcttctccatctccggcgtggtg 1078

                                                                        
Query: 336  ttgaacgacgcctccagcacctccggcgagatggccttccacacagaggtcttcccagca 395
            |||||||||| || ||  ||| |||| || || ||||||||||| || |||   || || 
Sbjct: 1077 ttgaacgacgactgcaagaccgccggagatattgccttccacaccgatgtccggcccgcc 1018

                                                                 
Query: 396  aggtggctgaagatcgggttgggggtggtgatgatagagaaccactccatgcc 448
            | |||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 1017 aagtggctaaagattgggttgggggtggtgatgatggagaaccactccatgcc 965

to top

>gb|AC149578.15| Medicago truncatula clone mth2-94f23, complete sequence
          Length = 119657

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 417   ggggtggtgatgatagagaaccactccat 445
             ||||||||||||||||| |||||||||||
Sbjct: 73668 ggggtggtgatgatagaaaaccactccat 73640

to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 345     gcctccagcacctccggcgagat 367
               |||||||||||||||||||||||
Sbjct: 3447476 gcctccagcacctccggcgagat 3447498

to top

>ref|XM_799919.1| Trypanosoma cruzi strain CL Brener PIF1 helicase-like protein
           (Tc00.1047053503677.20) partial mRNA
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 311 gagcttctccatctccggcgt 331
           |||||||||||||||||||||
Sbjct: 936 gagcttctccatctccggcgt 916

to top

>ref|XM_809555.1| Trypanosoma cruzi strain CL Brener PIF1 helicase-like protein
           (Tc00.1047053511717.80) partial mRNA
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 311 gagcttctccatctccggcgt 331
           |||||||||||||||||||||
Sbjct: 936 gagcttctccatctccggcgt 916

to top

>emb|Y18523.4|ASY18523 Actinoplanes sp. SE50/110 complete acarbose (acb) gene cluster, strain
             SE50/110
          Length = 41323

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 339   aacgacgcctccagcacctccggcg 363
             |||| ||||||||||||||||||||
Sbjct: 26029 aacgccgcctccagcacctccggcg 26005

to top

>ref|XM_450358.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 gagcttctccatctccggcg 330
           ||||||||||||||||||||
Sbjct: 174 gagcttctccatctccggcg 155

to top

>ref|XM_472092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4392

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 agcttctccatctccggcgt 331
           ||||||||||||||||||||
Sbjct: 108 agcttctccatctccggcgt 127

to top

>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   agcttctccatctccggcgt 331
             ||||||||||||||||||||
Sbjct: 24862 agcttctccatctccggcgt 24843

to top

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     gccgatgcgcgacgaatggc 260
               ||||||||||||||||||||
Sbjct: 2475345 gccgatgcgcgacgaatggc 2475326

to top

>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence
          Length = 171686

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   taactaaaatttatttattc 224
             ||||||||||||||||||||
Sbjct: 16220 taactaaaatttatttattc 16239

to top

>emb|CR387930.11| Zebrafish DNA sequence from clone CH211-69P15 in linkage group 17,
             complete sequence
          Length = 96155

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   cctaactaaaatttatttat 222
             ||||||||||||||||||||
Sbjct: 50966 cctaactaaaatttatttat 50985

to top

>emb|AL590644.14| Human DNA sequence from clone RP11-380J14 on chromosome 1 Contains a
              novel gene (FLJ45933), the PADI1 gene for type I peptidyl
              arginine deiminase, the PADI3 gene for type III peptidyl
              arginine deiminase, the 5' end of the PADI4 gene for type
              IV peptidyl arginine deiminase, complete sequence
          Length = 164862

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    gggttgggggtggtgatgat 430
              ||||||||||||||||||||
Sbjct: 119344 gggttgggggtggtgatgat 119363

to top

>emb|AL023584.1|HS67K17 Human DNA sequence from clone RP1-67K17 on chromosome 6q24.1-24.3,
             complete sequence
          Length = 144392

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   taactaaaatttatttattc 224
             ||||||||||||||||||||
Sbjct: 44161 taactaaaatttatttattc 44142

to top

>emb|X02570.1|SPDEVG Flesh fly gene for 25-kDa protein
          Length = 2344

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  caatctcctaactaaaattt 216
            ||||||||||||||||||||
Sbjct: 1789 caatctcctaactaaaattt 1770

to top

>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180982

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   actaaaatttatttattcct 226
             ||||||||||||||||||||
Sbjct: 30750 actaaaatttatttattcct 30731

to top

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 344    cgcctccagcacctccggcgagat 367
              |||||||||||||||| |||||||
Sbjct: 638799 cgcctccagcacctcctgcgagat 638822

to top

>gb|AC004886.1| Homo sapiens PAC clone RP4-784G16 from 7, complete sequence
          Length = 143364

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   taactaaaatttatttattc 224
             ||||||||||||||||||||
Sbjct: 37809 taactaaaatttatttattc 37828

to top

>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    gggttgggggtggtgatgat 430
              ||||||||||||||||||||
Sbjct: 220882 gggttgggggtggtgatgat 220901

to top

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     taaaatttatttattcctgc 228
               ||||||||||||||||||||
Sbjct: 1798645 taaaatttatttattcctgc 1798626

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 312      agcttctccatctccggcgt 331
                ||||||||||||||||||||
Sbjct: 17358432 agcttctccatctccggcgt 17358451

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 312      agcttctccatctccggcgt 331
                ||||||||||||||||||||
Sbjct: 20703143 agcttctccatctccggcgt 20703162



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 311     gagcttctccatctccggcg 330
               ||||||||||||||||||||
Sbjct: 4390486 gagcttctccatctccggcg 4390505

to top

>gb|AC023058.17|AC023058 Homo sapiens 3 BAC CTB-187G23 (CalTech Human BAC Library B) complete
             sequence
          Length = 140966

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   tttcaatctcctaactaaaa 213
             ||||||||||||||||||||
Sbjct: 40283 tttcaatctcctaactaaaa 40302

to top

>gb|AC026172.3|AC026172 Homo sapiens chromosome 3 clone RP11-168L3 map 3p, complete sequence
          Length = 181598

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tttcaatctcctaactaaaa 213
              ||||||||||||||||||||
Sbjct: 147860 tttcaatctcctaactaaaa 147879

to top

>gb|AF153836.1|AF153832S5 Homo sapiens human immunodeficiency virus type I enhancer-binding
            protein 2 (HIVEP2) gene, exons 3, 3b, 4, 5, 6, 7, 8, 9,
            10, and complete cds
          Length = 35809

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  taactaaaatttatttattc 224
            ||||||||||||||||||||
Sbjct: 2949 taactaaaatttatttattc 2968

to top

>dbj|AP005092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1112_E07
          Length = 132055

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   agcttctccatctccggcgt 331
             ||||||||||||||||||||
Sbjct: 96754 agcttctccatctccggcgt 96773

to top

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ggaagagcttctccatctcc 326
             ||||||||||||||||||||
Sbjct: 59397 ggaagagcttctccatctcc 59378

to top

>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1279D09
          Length = 134793

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   gagcttctccatctccggcg 330
             ||||||||||||||||||||
Sbjct: 93304 gagcttctccatctccggcg 93323

to top

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     cgcctccagcacctccggcg 363
               ||||||||||||||||||||
Sbjct: 2609628 cgcctccagcacctccggcg 2609609

to top

>emb|AL662974.3|OSJN00171 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061G20,
             complete sequence
          Length = 191218

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   agcttctccatctccggcgt 331
             ||||||||||||||||||||
Sbjct: 17198 agcttctccatctccggcgt 17217

to top

>gb|AC026194.4| Homo sapiens chromosome 3 clone RP11-45B16 map 3p, complete sequence
          Length = 181604

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tttcaatctcctaactaaaa 213
              ||||||||||||||||||||
Sbjct: 147866 tttcaatctcctaactaaaa 147885

to top

>gb|AC018506.5| Homo sapiens chromosome 3 clone RP11-58B17 map 3p, complete sequence
          Length = 191575

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   tttcaatctcctaactaaaa 213
             ||||||||||||||||||||
Sbjct: 52732 tttcaatctcctaactaaaa 52751


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,498,182
Number of Sequences: 3902068
Number of extensions: 5498182
Number of successful extensions: 119320
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118826
Number of HSP's gapped (non-prelim): 493
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result