ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48f03 |
|---|---|
| Clone Library Name | barley_pub |
>IF1A_WHEAT (P47815) Eukaryotic translation initiation factor 1A (EIF-1A)| (EIF-4C) Length = 143 Score = 91.3 bits (225), Expect = 8e-19 Identities = 47/63 (74%), Positives = 48/63 (76%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQDDKADVILKYMNDEARLLKAYGELPDT+RLN DYIQFEDEDI Sbjct: 81 RDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEGDSDYIQFEDEDI 140 Query: 239 DKI 231 DKI Sbjct: 141 DKI 143
>IF1A_ONOVI (P56331) Eukaryotic translation initiation factor 1A (EIF-1A)| (EIF-4C) Length = 144 Score = 77.8 bits (190), Expect = 1e-14 Identities = 43/64 (67%), Positives = 44/64 (68%), Gaps = 1/64 (1%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLN-XXXXXXXXXXXXXXXDYIQFEDED 243 RDYQDDKADVILK M DEARLLKAYGELPD RLN DYI+FEDED Sbjct: 81 RDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTANDYIEFEDED 140 Query: 242 IDKI 231 IDKI Sbjct: 141 IDKI 144
>IF1A_RAT (Q6VV72) Eukaryotic translation initiation factor 1A (eIF-1A)| (eIF-4C) (Liver regeneration-related protein LRRG048) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1A_MOUSE (Q60872) Eukaryotic translation initiation factor 1A (eIF-1A)| (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AY_PANTR (Q6GVM3) Eukaryotic translation initiation factor 1A, Y-chromosomal| (eIF-1A Y isoform) (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AY_HUMAN (O14602) Eukaryotic translation initiation factor 1A, Y-chromosomal| (eIF-1A Y isoform) (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AX_PONPY (Q5RA42) Eukaryotic translation initiation factor 1A, X-chromosomal| (eIF-1A X isoform) (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AX_MOUSE (Q8BMJ3) Eukaryotic translation initiation factor 1A, X-chromosomal| (eIF-1A X isoform) (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AX_HUMAN (P47813) Eukaryotic translation initiation factor 1A, X-chromosomal| (eIF-1A X isoform) (eIF-4C) Length = 143 Score = 61.2 bits (147), Expect = 9e-10 Identities = 34/63 (53%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1A_RABIT (P47814) Eukaryotic translation initiation factor 1A (EIF-1A)| (EIF-4C) Length = 143 Score = 59.7 bits (143), Expect = 3e-09 Identities = 33/63 (52%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 R+YQD+KADVILKY DEAR LKAYGELP+ ++N D I +DEDI Sbjct: 81 REYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1AH_HUMAN (O75642) Putative eukaryotic translation initiation factor 1A| (eIF-1A) (eIF-4C) Length = 143 Score = 59.7 bits (143), Expect = 3e-09 Identities = 33/63 (52%), Positives = 39/63 (61%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLNXXXXXXXXXXXXXXXDYIQFEDEDI 240 RDYQD+KADVILKY DEAR L+AYGELP+ ++N D I +DEDI Sbjct: 81 RDYQDNKADVILKYNADEARSLQAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDI 140 Query: 239 DKI 231 D I Sbjct: 141 DDI 143
>IF1A_SCHPO (P55877) Eukaryotic translation initiation factor 1A (EIF-1A)| (EIF-4C) Length = 138 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/35 (62%), Positives = 28/35 (80%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLN 315 R++QD+K DVILKY DEAR LK GELP+T ++N Sbjct: 82 REFQDEKGDVILKYTADEARTLKNQGELPETAKIN 116
>IF1A_YEAST (P38912) Eukaryotic translation initiation factor 1A (EIF-1A)| (EIF-4C) Length = 153 Score = 45.8 bits (107), Expect = 4e-05 Identities = 20/35 (57%), Positives = 26/35 (74%) Frame = -2 Query: 419 RDYQDDKADVILKYMNDEARLLKAYGELPDTLRLN 315 RD+QDD+ DV+ KY DEAR LK GELP+ ++N Sbjct: 82 RDFQDDQCDVVHKYNLDEARTLKNQGELPENAKIN 116
>BCSA3_ACEXY (Q9WX61) Cellulose synthase 1 catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 745 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -1 Query: 228 SFFFSSPR---LASPLYFLFYSVLIACARP 148 SFFF+ PR LASPL FLF+S I A P Sbjct: 406 SFFFAIPRVIFLASPLAFLFFSQNIIAASP 435
>BCSA1_ACEXY (P19449) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 754 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Frame = -1 Query: 228 SFFFSSPR---LASPLYFLFYSVLIACARP 148 SFFF+ PR LASPL FLF+ I A P Sbjct: 406 SFFFAIPRVIFLASPLAFLFFGQNIIAASP 435
>TF65_CHICK (P98152) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 558 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Frame = +3 Query: 63 FRHP----KSQRFLVTKSINPQQPTDRYRQTRTDVRTLLEQNRTESIEARRGEAR 215 FR P +S R VT + Q+P+DR R D R L Q + IE +R R Sbjct: 257 FRTPPFRERSLRHPVTVRMELQRPSDRQRSPPLDFRYLPHQGDLQCIEEKRKRTR 311
>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi| complex-associated protein of 170 kDa) (GCP170) Length = 1498 Score = 28.9 bits (63), Expect = 5.2 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = +3 Query: 138 QTRTDVRTLLEQNRTESIEARRGEARRRK 224 + + +++TLL+QN+ ++ RRG A+ RK Sbjct: 1355 ELKNNMKTLLQQNQQLKLDLRRGAAKTRK 1383
>CHLD_SYNP7 (O07345) Magnesium-chelatase subunit chlD (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) Length = 677 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -2 Query: 395 DVILKYMNDEARLLKAYGELPDTLR 321 D L+Y ND A++L+AY E ++LR Sbjct: 225 DQALRYANDPAKVLEAYAEETESLR 249
>BCSA2_ACEXY (O82859) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 756 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 228 SFFFSSPR---LASPLYFLFYSVLIACARP 148 SFFF+ PR LASPL FLF I A P Sbjct: 408 SFFFAIPRVIFLASPLAFLFAGQNIIAAAP 437
>LIPB_MYCLE (O32961) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 235 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +1 Query: 97 PNPSIHNSPPTDTDRQGR 150 PNPS+H P +TDR G+ Sbjct: 64 PNPSLHGVPVVETDRGGK 81
>IF1A1_HALSA (Q9HN64) Translation initiation factor 1A-1 (aIF-1A-1)| Length = 95 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 416 DYQDDKADVILKYMNDEARLLKAYGEL 336 D+QDDKADV +Y +A L+ G + Sbjct: 68 DWQDDKADVTWRYEKSDADQLREEGHI 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,794,813 Number of Sequences: 219361 Number of extensions: 788772 Number of successful extensions: 2369 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2324 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2365 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
