Clone Information

BLAST Search Result

Clone Name	rbart48f01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	EF1D1_ORYSA (Q40680) Elongation factor 1-delta 1 (EF-1-delta 1) ...	160	2e-39
2	EF1D2_ORYSA (Q40682) Elongation factor 1-delta 2 (EF-1-delta 2) ...	159	5e-39
3	EF1D_PIMBR (P93447) Elongation factor 1-delta (EF-1-delta) (Elon...	157	1e-38
4	EF1B_ORYSA (P29545) Elongation factor 1-beta (EF-1-beta) (Elonga...	154	1e-37
5	EF1D2_ARATH (Q9SI20) Elongation factor 1-delta 2 (EF-1-delta 2) ...	152	6e-37
6	EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) ...	152	7e-37
7	EF1D_BETVU (O81918) Elongation factor 1-delta (EF-1-delta) (Elon...	149	5e-36
8	EF1B1_ARATH (Q84WM9) Elongation factor 1-beta 1 (EF-1-beta 1) (E...	148	8e-36
9	EF1B2_ARATH (Q9SCX3) Elongation factor 1-beta 2 (EF-1-beta 2) (E...	144	2e-34
10	EF1B_WHEAT (P29546) Elongation factor 1-beta (EF-1-beta) (Elonga...	142	4e-34
11	EF1B_XENTR (Q6DET9) Elongation factor 1-beta (EF-1-beta)	115	6e-26
12	EF1B2_BOMMO (P29522) Elongation factor 1-beta'	114	1e-25
13	EF1B_RABIT (P34826) Elongation factor 1-beta (EF-1-beta)	113	3e-25
14	EF1D_XENLA (P29693) Elongation factor 1-delta (EF-1-delta) (P36)	113	3e-25
15	EF1B_DROME (O96827) Probable elongation factor 1-beta (EF-1-beta)	113	3e-25
16	EF1B_BOVIN (Q5E983) Elongation factor 1-beta (EF-1-beta)	113	4e-25
17	EF1B_MOUSE (O70251) Elongation factor 1-beta (EF-1-beta)	112	8e-25
18	EF1B_HUMAN (P24534) Elongation factor 1-beta (EF-1-beta)	112	8e-25
19	EF1B_CHICK (Q9YGQ1) Elongation factor 1-beta (EF-1-beta)	112	8e-25
20	EF1B_XENLA (P30151) Elongation factor 1-beta (EF-1-beta) (p30)	111	1e-24
21	EF1D_ARTSA (P32192) Elongation factor 1-delta (EF-1-delta)	110	2e-24
22	EF1D_RABIT (P53787) Elongation factor 1-delta (EF-1-delta)	109	5e-24
23	EF1D_HUMAN (P29692) Elongation factor 1-delta (EF-1-delta) (Anti...	109	5e-24
24	EF1D_MOUSE (P57776) Elongation factor 1-delta (EF-1-delta)	107	2e-23
25	EF1B_ARTSA (P12262) Elongation factor 1-beta (EF-1-beta)	106	5e-23
26	EF1B1_CAEEL (P34460) Probable elongation factor 1-beta/1-delta 1...	105	6e-23
27	EF1B2_CAEEL (Q9U2H9) Probable elongation factor 1-beta/1-delta 2...	105	6e-23
28	EF1B_SCHPO (O74173) Elongation factor 1-beta (EF-1-beta)	99	6e-21
29	EF1D_DROME (Q9VL18) Probable elongation factor 1-delta (EF-1-delta)	99	7e-21
30	EF1B_CANAL (P78590) Elongation factor 1-beta (EF-1-beta)	91	3e-18
31	EF1B_YEAST (P32471) Elongation factor 1-beta (EF-1-beta) (Transl...	88	1e-17
32	EF1B_TRYCR (P34827) 25 kDa elongation factor 1-beta (EF-1-beta)	82	1e-15
33	EF1B_PIG (P29412) Elongation factor 1-beta (EF-1-beta)	77	3e-14
34	EF1B_ARCFU (O29681) Elongation factor 1-beta (EF-1-beta) (aEF-1b...	37	0.045
35	SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...	30	5.5
36	SYM_METCA (Q60CR0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...	29	7.2
37	YLIE_ECOLI (P75800) Hypothetical protein yliE	29	7.2
38	ISPE_PELLD (Q3B2S6) 4-diphosphocytidyl-2-C-methyl-D-erythritol k...	29	7.2
39	GCSP_YEAST (P49095) Glycine dehydrogenase [decarboxylating], mit...	29	9.3
40	RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polype...	29	9.3

>EF1D1_ORYSA (Q40680) Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation|
           factor 1B-beta 1) (eEF-1B beta 1)
          Length = 228

 Score =  160 bits (406), Expect = 2e-39
 Identities = 77/87 (88%), Positives = 83/87 (95%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM KLEEAVR++KMEGLLWGASKL+PVGYGIKKLQIMMTI+DDLVSVD
Sbjct: 142 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVD 201

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           +LIED+   EPANEYIQSCDIVAFNKI
Sbjct: 202 SLIEDYFYTEPANEYIQSCDIVAFNKI 228

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>EF1D2_ORYSA (Q40682) Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation|
           factor 1B-beta 2) (eEF-1B beta 2)
          Length = 225

 Score =  159 bits (402), Expect = 5e-39
 Identities = 76/87 (87%), Positives = 83/87 (95%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM KLEEAVR++KMEGLLWGASKL+PVGYGIKKLQIMMTI+DDLVSVD
Sbjct: 139 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVD 198

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           +LIED+   EPANE+IQSCDIVAFNKI
Sbjct: 199 SLIEDYFYTEPANEFIQSCDIVAFNKI 225

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>EF1D_PIMBR (P93447) Elongation factor 1-delta (EF-1-delta) (Elongation factor|
           1B-beta) (eEF-1B beta)
          Length = 225

 Score =  157 bits (398), Expect = 1e-38
 Identities = 76/87 (87%), Positives = 82/87 (94%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM KLEEAVRSIKM+GLLWGASKL+ VGYGIKKLQIM+TI+DDLVSVD
Sbjct: 139 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVD 198

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L+ED+L  EPANEYIQSCDIVAFNKI
Sbjct: 199 DLVEDYLTAEPANEYIQSCDIVAFNKI 225

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>EF1B_ORYSA (P29545) Elongation factor 1-beta (EF-1-beta) (Elongation factor|
           1B-alpha 2) (eEF-1B alpha) (Elongation factor 1-beta')
           (EF-1-beta')
          Length = 223

 Score =  154 bits (390), Expect = 1e-37
 Identities = 73/87 (83%), Positives = 82/87 (94%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM KLEEAVRS++MEGL WGASKL+PVGYGIKKLQIM+TI+DDLVSVD
Sbjct: 137 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVD 196

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           +LIE+HL  EP NE++QSCDIVAFNKI
Sbjct: 197 SLIEEHLTEEPINEFVQSCDIVAFNKI 223

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>EF1D2_ARATH (Q9SI20) Elongation factor 1-delta 2 (EF-1-delta 2) (Elongation|
           factor 1B-beta 2) (eEF-1B beta 2)
          Length = 231

 Score =  152 bits (384), Expect = 6e-37
 Identities = 71/87 (81%), Positives = 80/87 (91%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VL+D+KPWDDETDM KLEEAVRSI+MEGL WGASKL+PVGYGIKKL IM TI+DDLVS+D
Sbjct: 145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSID 204

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           T+IE+ L VEP NEY+QSCDIVAFNKI
Sbjct: 205 TMIEEQLTVEPINEYVQSCDIVAFNKI 231

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>EF1D1_ARATH (P48006) Elongation factor 1-delta 1 (EF-1-delta 1) (Elongation|
           factor 1B-beta 1) (eEF-1B beta 1)
          Length = 231

 Score =  152 bits (383), Expect = 7e-37
 Identities = 70/87 (80%), Positives = 81/87 (93%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VL+D+KPWDDETDM KLEEAV+SI+MEGL WGASKL+PVGYGIKKLQI+ TI+DDLVS+D
Sbjct: 145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSID 204

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           T+IE+ L VEP NEY+QSCDIVAFNKI
Sbjct: 205 TMIEEQLTVEPINEYVQSCDIVAFNKI 231

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>EF1D_BETVU (O81918) Elongation factor 1-delta (EF-1-delta) (Elongation factor|
           1B-beta) (eEF-1B beta)
          Length = 230

 Score =  149 bits (376), Expect = 5e-36
 Identities = 73/87 (83%), Positives = 79/87 (90%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM KLEEAVRS++ EGL  GASKL+PVGYGIKKL IMMTI+DDLVSVD
Sbjct: 144 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVD 203

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            LIED+L VEP NEY+QSCDIVAFNKI
Sbjct: 204 NLIEDYLTVEPINEYVQSCDIVAFNKI 230

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>EF1B1_ARATH (Q84WM9) Elongation factor 1-beta 1 (EF-1-beta 1) (Elongation|
           factor 1B-alpha 1) (eEF-1B alpha 1) (Elongation factor
           1-beta' 1) (EF-1-beta' 1)
          Length = 228

 Score =  148 bits (374), Expect = 8e-36
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLL+VKPWDDETDM KLEEAVRS++M GL WGASKL+PVGYGIKKL IMMTI+DDLVSVD
Sbjct: 142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVD 201

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            LIEDHL  EP NEYIQS DIVAFNKI
Sbjct: 202 NLIEDHLTSEPNNEYIQSVDIVAFNKI 228

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>EF1B2_ARATH (Q9SCX3) Elongation factor 1-beta 2 (EF-1-beta 2) (Elongation|
           factor 1B-alpha 2) (eEF-1B alpha 2) (Elongation factor
           1-beta' 2) (EF-1-beta' 2)
          Length = 224

 Score =  144 bits (363), Expect = 2e-34
 Identities = 70/87 (80%), Positives = 75/87 (86%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VL+DVKPWDDETDM KLEEAVR ++M GL WGASKL+PVGYGIKKL IM TI+DDLVS D
Sbjct: 138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPD 197

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            LIED L  EP NEYIQSCDIVAFNKI
Sbjct: 198 NLIEDFLTSEPNNEYIQSCDIVAFNKI 224

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>EF1B_WHEAT (P29546) Elongation factor 1-beta (EF-1-beta) (Elongation factor|
           1B-alpha 2) (eEF-1B alpha) (Elongation factor 1-beta')
           (EF-1-beta')
          Length = 215

 Score =  142 bits (359), Expect = 4e-34
 Identities = 70/87 (80%), Positives = 77/87 (88%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VL+D+KPWDDETDM KLEEAVRS++MEGL WGASKLMPVGYGIKKLQIM+TIIDDL S  
Sbjct: 131 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS-- 188

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
           T IE+ LC  P NEY+QSCDIVAFNKI
Sbjct: 189 TPIEEVLCEAPINEYVQSCDIVAFNKI 215

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>EF1B_XENTR (Q6DET9) Elongation factor 1-beta (EF-1-beta)|
          Length = 227

 Score =  115 bits (289), Expect = 6e-26
 Identities = 57/87 (65%), Positives = 67/87 (77%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VRSI+MEGL+WGASKL+PVGYGIKKLQI   + DD V  D
Sbjct: 144 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD 203

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+    E   +++QS D+ AFNKI
Sbjct: 204 VLEENITAFE---DFVQSMDVAAFNKI 227

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>EF1B2_BOMMO (P29522) Elongation factor 1-beta'|
          Length = 221

 Score =  114 bits (286), Expect = 1e-25
 Identities = 57/87 (65%), Positives = 68/87 (78%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM ++E  VR+I+MEGLLWGASKL+PVGYGI KLQIM  I DD VSVD
Sbjct: 138 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD 197

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E    ++   +++QS DI AFNKI
Sbjct: 198 LLTEK---IQEFEDFVQSVDIAAFNKI 221

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>EF1B_RABIT (P34826) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score =  113 bits (283), Expect = 3e-25
 Identities = 56/87 (64%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDMVKLEE VRSI+ +GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 141 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 200

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E     E   +Y+QS D+ AFNKI
Sbjct: 201 MLEEQITAFE---DYVQSMDVAAFNKI 224

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>EF1D_XENLA (P29693) Elongation factor 1-delta (EF-1-delta) (P36)|
          Length = 265

 Score =  113 bits (283), Expect = 3e-25
 Identities = 54/87 (62%), Positives = 67/87 (77%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VR+++M+GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 241

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +    +Y+QS DI AFNKI
Sbjct: 242 ILEEE---ITKFEDYVQSVDIAAFNKI 265

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>EF1B_DROME (O96827) Probable elongation factor 1-beta (EF-1-beta)|
          Length = 221

 Score =  113 bits (283), Expect = 3e-25
 Identities = 57/87 (65%), Positives = 68/87 (78%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           VLLDVKPWDDETDM ++E  VR+I+M+GLLWGASKL+PVGYGI KLQIM  I DD VS+D
Sbjct: 138 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSID 197

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E    +E   +++QS DI AFNKI
Sbjct: 198 LLQEK---IEEFEDFVQSVDIAAFNKI 221

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>EF1B_BOVIN (Q5E983) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score =  113 bits (282), Expect = 4e-25
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VRSI+ +GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 141 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 200

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E    +   +EY+QS D+ AFNKI
Sbjct: 201 MLEEQ---ITAFDEYVQSMDVAAFNKI 224

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>EF1B_MOUSE (O70251) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score =  112 bits (279), Expect = 8e-25
 Identities = 55/87 (63%), Positives = 65/87 (74%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VRSI+ +GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 141 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 200

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E     E   +Y+QS D+ AFNKI
Sbjct: 201 MLEEQITAFE---DYVQSMDVAAFNKI 224

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>EF1B_HUMAN (P24534) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score =  112 bits (279), Expect = 8e-25
 Identities = 55/87 (63%), Positives = 65/87 (74%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VRSI+ +GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 141 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 200

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E     E   +Y+QS D+ AFNKI
Sbjct: 201 MLEEQITAFE---DYVQSMDVAAFNKI 224

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>EF1B_CHICK (Q9YGQ1) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score =  112 bits (279), Expect = 8e-25
 Identities = 55/87 (63%), Positives = 65/87 (74%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE VRSI+ +GL+WG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 141 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 200

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E     E   +Y+QS D+ AFNKI
Sbjct: 201 MLEEQITAFE---DYVQSMDVAAFNKI 224

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>EF1B_XENLA (P30151) Elongation factor 1-beta (EF-1-beta) (p30)|
          Length = 226

 Score =  111 bits (278), Expect = 1e-24
 Identities = 55/87 (63%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM KLEE +RSI+M+GLLWG+SKL+PVGYGIKKLQI   + DD V  D
Sbjct: 143 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD 202

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E     E   +++QS D+ AFNKI
Sbjct: 203 VLEEKITAFE---DFVQSMDVAAFNKI 226

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>EF1D_ARTSA (P32192) Elongation factor 1-delta (EF-1-delta)|
          Length = 237

 Score =  110 bits (276), Expect = 2e-24
 Identities = 53/87 (60%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLD+KPWDDETDM  +E  VRSI M+GL+WGASKL+PV +G+KKLQI   + DD VSVD
Sbjct: 154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVD 213

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L+E    +E   +Y+QS DI AFNKI
Sbjct: 214 ELVEK---IEAFEDYVQSVDIAAFNKI 237

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>EF1D_RABIT (P53787) Elongation factor 1-delta (EF-1-delta)|
          Length = 280

 Score =  109 bits (272), Expect = 5e-24
 Identities = 52/87 (59%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM +LE  VRS++++GL+WGASKL+PVGYGI+KLQI   + DD V  D
Sbjct: 197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 256

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +    E++QS DI AFNKI
Sbjct: 257 LLEEE---ITKFEEHVQSVDIAAFNKI 280

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>EF1D_HUMAN (P29692) Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)|
          Length = 280

 Score =  109 bits (272), Expect = 5e-24
 Identities = 53/87 (60%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM +LE  VRSI+++GL+WGASKL+PVGYGI+KLQI   + DD V  D
Sbjct: 197 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 256

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +    E++QS DI AFNKI
Sbjct: 257 LLEEE---ITKFEEHVQSVDIAAFNKI 280

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>EF1D_MOUSE (P57776) Elongation factor 1-delta (EF-1-delta)|
          Length = 280

 Score =  107 bits (267), Expect = 2e-23
 Identities = 52/87 (59%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +LLDVKPWDDETDM +LE  VRSI+++GL+WGASKL+PVGYGI+KLQI   + DD V  D
Sbjct: 197 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD 256

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +    E++QS DI AF+KI
Sbjct: 257 LLEEE---ITKFEEHVQSVDIAAFDKI 280

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>EF1B_ARTSA (P12262) Elongation factor 1-beta (EF-1-beta)|
          Length = 206

 Score =  106 bits (264), Expect = 5e-23
 Identities = 48/87 (55%), Positives = 67/87 (77%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V+LD+KPWDDETDM ++E+ VRS++M+GL+WGA+KL+P+ YGIKKL IM  + DD VS+D
Sbjct: 123 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSID 182

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E    +    +++QS DI AFNK+
Sbjct: 183 ELQEK---ISEFEDFVQSVDIAAFNKV 206

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>EF1B1_CAEEL (P34460) Probable elongation factor 1-beta/1-delta 1|
           (EF-1-beta/delta 1)
          Length = 213

 Score =  105 bits (263), Expect = 6e-23
 Identities = 53/87 (60%), Positives = 68/87 (78%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V+LDVKPWDDETD+ ++E+ VRSI+M+GL+WG +KL+P+GYGIKKLQI+  I D  VSVD
Sbjct: 129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVD 188

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            LIE         +++QS DIVAFNKI
Sbjct: 189 DLIEK--ITGDFEDHVQSVDIVAFNKI 213

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>EF1B2_CAEEL (Q9U2H9) Probable elongation factor 1-beta/1-delta 2|
           (EF-1-beta/delta 2)
          Length = 262

 Score =  105 bits (263), Expect = 6e-23
 Identities = 53/87 (60%), Positives = 68/87 (78%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V+LDVKPWDDETD+ ++E+ VRSI+M+GL+WG +KL+P+GYGIKKLQI+  I D  VSVD
Sbjct: 178 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVD 237

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            LIE         +++QS DIVAFNKI
Sbjct: 238 DLIEK--ITGDFEDHVQSVDIVAFNKI 262

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>EF1B_SCHPO (O74173) Elongation factor 1-beta (EF-1-beta)|
          Length = 214

 Score = 99.4 bits (246), Expect = 6e-21
 Identities = 48/87 (55%), Positives = 66/87 (75%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V LDVKPWDDET M +LE+AVRSI+M+GL+WG SKL+PVG+G+ K QI + + DD VS++
Sbjct: 131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLE 190

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +E   +Y+QS DI A +K+
Sbjct: 191 ALQEE---LEGFEDYVQSTDIAAMSKL 214

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>EF1D_DROME (Q9VL18) Probable elongation factor 1-delta (EF-1-delta)|
          Length = 256

 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 46/87 (52%), Positives = 62/87 (71%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           ++LDVKPWDDETD+  +E  +R I  +GLLWGASK +PV +GI+KL I   + DD VS+D
Sbjct: 173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSID 232

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E+   +E   +++QS DI AFNKI
Sbjct: 233 WLTEE---IEKLEDFVQSVDIAAFNKI 256

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>EF1B_CANAL (P78590) Elongation factor 1-beta (EF-1-beta)|
          Length = 213

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 46/87 (52%), Positives = 61/87 (70%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V LDVKPWDDETD+ +L   V++I+MEGL WGA + +PVG+GIKKLQI + + D LVS+D
Sbjct: 130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLD 189

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L      VE   +++QS DI A  K+
Sbjct: 190 DL---QAAVEEDEDHVQSTDIAAMQKL 213

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>EF1B_YEAST (P32471) Elongation factor 1-beta (EF-1-beta) (Translation|
           elongation factor 1B alpha) (Eukaryotic elongation
           factor 1Balpha) (eEF1Balpha)
          Length = 205

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 42/87 (48%), Positives = 61/87 (70%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           V LDVKPWDDET++ ++   V++I+MEGL WGA + +P+G+GIKKLQI   + DD VS+D
Sbjct: 122 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLD 181

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L +    +E   +++QS DI A  K+
Sbjct: 182 DLQQS---IEEDEDHVQSTDIAAMQKL 205

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>EF1B_TRYCR (P34827) 25 kDa elongation factor 1-beta (EF-1-beta)|
          Length = 222

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 42/87 (48%), Positives = 57/87 (65%)
 Frame = -2

Query: 482 VLLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVD 303
           +L DVKPWDD  D+  L   + ++K +GLLWG  KL+PV +G+KKLQ ++ I DD V  D
Sbjct: 139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSD 198

Query: 302 TLIEDHLCVEPANEYIQSCDIVAFNKI 222
            L E  +  E   + +QS DIVA+NKI
Sbjct: 199 DLEELIMSFE---DEVQSMDIVAWNKI 222

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>EF1B_PIG (P29412) Elongation factor 1-beta (EF-1-beta)|
          Length = 224

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 41/83 (49%), Positives = 48/83 (57%)
 Frame = -2

Query: 470 VKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVDTLIE 291
           VKPWDDE  M KLEE V SI+ +GL+     L+PVGYGIK         DD V  D L E
Sbjct: 145 VKPWDDEXXMAKLEEXVXSIQADGLVXXXXXLVPVGYGIKXXXXXXXXXDDKVGTDMLEE 204

Query: 290 DHLCVEPANEYIQSCDIVAFNKI 222
                E   +Y+QS D+ AFNKI
Sbjct: 205 QITAFE---DYVQSMDVAAFNKI 224

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>EF1B_ARCFU (O29681) Elongation factor 1-beta (EF-1-beta) (aEF-1beta)|
          Length = 88

 Score = 36.6 bits (83), Expect = 0.045
 Identities = 18/62 (29%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = -2

Query: 470 VKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSV-DTLI 294
           V P D + D+ ++ E +++I+MEG+    S + P+ +G+K + ++M ++ D+  + D  I
Sbjct: 10  VMPSDVDVDLNEVLEKIKNIQMEGVEIRDSAIQPIAFGLKAI-VLMAVMPDMEGIGDRYI 68

Query: 293 ED 288
           E+
Sbjct: 69  EE 70

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>SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 679

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -2

Query: 431 EEAVRSIKMEGLLW---GASKLMPVGYGIKKLQIMMTIIDDLVSVDTLIEDHLCVEPANE 261
           E+  + + ME   W   G + L+PVG+ + K +++   I+D V ++  ++  L  + ANE
Sbjct: 503 EKLRKMLNMESFEWSELGRNDLLPVGHQLNKPELLFEKIEDSV-IEAQVQKLLDTKKANE 561

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>SYM_METCA (Q60CR0) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 694

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 437 KLEEAVRS-IKMEGLLW-GASKLMPVGYGIKKLQIMMTIIDDLVSVDTLIE 291
           +L EAV   +K+  L W  A  L+P G+ I   Q +MT ID    VD L+E
Sbjct: 504 RLAEAVEGFLKIPSLTWQDAQTLLPQGHTINDYQHLMTRIDP-KQVDALVE 553

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>YLIE_ECOLI (P75800) Hypothetical protein yliE|
          Length = 782

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = -2

Query: 479 LLDVKPWDDETDMVKLEEAVRSIKMEGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVDT 300
           LL +  +D E+  +K    + S   + L  G  KL     G++ ++ +  + +       
Sbjct: 367 LLSLISYDQESGFIKNMAIIESNNNQYLAVGIIKLC----GLEAVEAVFGVDER-----N 417

Query: 299 LIEDHLCVEPANEYIQSCDIVAFN 228
            I   LC   A +Y Q CDIV FN
Sbjct: 418 KIVRKLCQRIAEKYAQCCDIVTFN 441

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>ISPE_PELLD (Q3B2S6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 287

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324 NDGHHNLELLDAISNWHE-LGSTPQKALHLDASDSFL*LDHVSLII 458
           +DG+HNLE + A  +WH+ L  +P  A+ +  +++ L  D  +L I
Sbjct: 23  DDGYHNLETIFAPVSWHDTLCFSPADAISMRCTNADLPTDGSNLCI 68

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>GCSP_YEAST (P49095) Glycine dehydrogenase [decarboxylating], mitochondrial|
            precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine
            cleavage system P-protein)
          Length = 1034

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
 Frame = +3

Query: 231  EGNNVTALDVLVRWFDAQMVFNQSVN-------RDKVINDGHHNLELLDAISNWHELGST 389
            E  N+  LD   R+ DA +   + +N       + +++ +  H+LE L   SNW   G T
Sbjct: 931  ESENLEELD---RFCDAMISIKEEINALVAGQPKGQILKNAPHSLEDLITSSNWDTRGYT 987

Query: 390  PQKALH 407
             ++A +
Sbjct: 988  REEAAY 993

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>RPA2_HUMAN (Q9H9Y6) DNA-directed RNA polymerase I 135 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase I subunit 2) (RPA135)
          Length = 1135

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 404 EGLLWGASKLMPVGYGIKKLQIMMTIIDDLVSVDTLIEDHLCVEPANEYIQSC 246
           EGL      + P  +  K  +I  TI+D ++S  T+ +  +C E AN Y   C
Sbjct: 52  EGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKE-ANVYPAEC 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,613,412
Number of Sequences: 219361
Number of extensions: 1502598
Number of successful extensions: 3915
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3894
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result