Clone Name | rbart48e07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 232 bits (117), Expect = 6e-58 Identities = 189/213 (88%) Strand = Plus / Plus Query: 100 tcatgtttccttgggtatggctgtaaggggggtgactaaagataacaccaccccacactt 159 |||| ||||||||||||||||| | |||||| | |||| ||||||||||||||||||||| Sbjct: 10686901 tcatatttccttgggtatggctttgagggggttaactagagataacaccaccccacactt 10686960 Query: 160 ctctgtcatgtctatcccagtctccttgacgtccgcaggaagctcccactcgaaccgatg 219 ||| ||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| Sbjct: 10686961 ctccgtcatgtctatcccaccctcctttgcatccgccggaagctcccactcgaaccgatg 10687020 Query: 220 gagcagcgtgccaagaatcaggggtatcagcttctgagcaagcggcatcccggggcagat 279 ||| |||||||| | || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 10687021 gagtagcgtgccgatgatgaggggtatgagcttctgagcaagcggcatcccggggcagat 10687080 Query: 280 gcgtcggccaagaccgaacgggatcatctcgaa 312 ||| ||||| || ||||| |||||||| ||||| Sbjct: 10687081 gcgccggccgaggccgaaggggatcatttcgaa 10687113
>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036B02 Length = 168253 Score = 232 bits (117), Expect = 6e-58 Identities = 189/213 (88%) Strand = Plus / Plus Query: 100 tcatgtttccttgggtatggctgtaaggggggtgactaaagataacaccaccccacactt 159 |||| ||||||||||||||||| | |||||| | |||| ||||||||||||||||||||| Sbjct: 39964 tcatatttccttgggtatggctttgagggggttaactagagataacaccaccccacactt 40023 Query: 160 ctctgtcatgtctatcccagtctccttgacgtccgcaggaagctcccactcgaaccgatg 219 ||| ||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| Sbjct: 40024 ctccgtcatgtctatcccaccctcctttgcatccgccggaagctcccactcgaaccgatg 40083 Query: 220 gagcagcgtgccaagaatcaggggtatcagcttctgagcaagcggcatcccggggcagat 279 ||| |||||||| | || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 40084 gagtagcgtgccgatgatgaggggtatgagcttctgagcaagcggcatcccggggcagat 40143 Query: 280 gcgtcggccaagaccgaacgggatcatctcgaa 312 ||| ||||| || ||||| |||||||| ||||| Sbjct: 40144 gcgccggccgaggccgaaggggatcatttcgaa 40176
>dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B08, full insert sequence Length = 1743 Score = 232 bits (117), Expect = 6e-58 Identities = 189/213 (88%) Strand = Plus / Minus Query: 100 tcatgtttccttgggtatggctgtaaggggggtgactaaagataacaccaccccacactt 159 |||| ||||||||||||||||| | |||||| | |||| ||||||||||||||||||||| Sbjct: 1615 tcatatttccttgggtatggctttgagggggttaactagagataacaccaccccacactt 1556 Query: 160 ctctgtcatgtctatcccagtctccttgacgtccgcaggaagctcccactcgaaccgatg 219 ||| ||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| Sbjct: 1555 ctccgtcatgtctatcccaccctcctttgcatccgccggaagctcccactcgaaccgatg 1496 Query: 220 gagcagcgtgccaagaatcaggggtatcagcttctgagcaagcggcatcccggggcagat 279 ||| |||||||| | || |||||||| |||||||||||||||||||||||||||||||| Sbjct: 1495 gagtagcgtgccgatgatgaggggtatgagcttctgagcaagcggcatcccggggcagat 1436 Query: 280 gcgtcggccaagaccgaacgggatcatctcgaa 312 ||| ||||| || ||||| |||||||| ||||| Sbjct: 1435 gcgccggccgaggccgaaggggatcatttcgaa 1403
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 152 ccacacttctctgtcatgtctatcccagtctccttga 188 ||||| || |||||||||||||| ||||||||||||| Sbjct: 7867925 ccacatttttctgtcatgtctataccagtctccttga 7867961
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 152 ccacacttctctgtcatgtctatcccagtctccttga 188 ||||| || |||||||||||||| ||||||||||||| Sbjct: 7865760 ccacatttttctgtcatgtctataccagtctccttga 7865796
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 152 ccacacttctctgtcatgtctatcccagtctccttga 188 ||||| || |||||||||||||| ||||||||||||| Sbjct: 53523 ccacatttttctgtcatgtctataccagtctccttga 53559
>emb|AL162500.15| Human DNA sequence from clone RP11-318K19 on chromosome 13 Contains part of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), a novel gene and two CpG islands, complete sequence Length = 128554 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 19 ttaataatatttttccttacagatct 44 |||||||||||||||||| ||||||| Sbjct: 103539 ttaataatatttttccttccagatct 103514
>emb|CR450848.13| Zebrafish DNA sequence from clone CH211-149E23 in linkage group 15, complete sequence Length = 191457 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttatttaataatatttttcct 35 |||||||||||||||||||||| Sbjct: 68016 tttatttaataatatttttcct 67995
>emb|AL732516.6| Mouse DNA sequence from clone RP23-403H17 on chromosome 11 Contains a novel gene, complete sequence Length = 99659 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 attctggtttatttaataatattttt 32 |||| ||||||||||||||||||||| Sbjct: 70115 attcaggtttatttaataatattttt 70090
>emb|AL928863.14| Zebrafish DNA sequence from clone CH211-152B13, complete sequence Length = 142564 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttatttaataatatttttcct 35 |||||||||||||||||||||| Sbjct: 121549 tttatttaataatatttttcct 121570
>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence Length = 182452 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttatttaataatatttttcct 35 |||||||||||||||||||||| Sbjct: 103459 tttatttaataatatttttcct 103438
>gb|AC109186.7| Mus musculus chromosome 5, clone RP24-351E22, complete sequence Length = 174202 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 aaattctggtttatttaataa 25 ||||||||||||||||||||| Sbjct: 98474 aaattctggtttatttaataa 98494
>gb|AC098710.2| Mus musculus BAC clone RP23-1L15 from 5, complete sequence Length = 213811 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 aaattctggtttatttaataa 25 ||||||||||||||||||||| Sbjct: 169565 aaattctggtttatttaataa 169545
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tacaagtcatgtttccttggg 114 ||||||||||||||||||||| Sbjct: 873139 tacaagtcatgtttccttggg 873159
>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence Length = 132131 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 tacaagtcatgtttccttggg 114 ||||||||||||||||||||| Sbjct: 39359 tacaagtcatgtttccttggg 39379
>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome Length = 697724 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tctggtttatttaataatatt 29 ||||||||||||||||||||| Sbjct: 446128 tctggtttatttaataatatt 446108
>gb|AE001425.1| Plasmodium falciparum 3D7 chromosome 2 section 62 of 73 of the complete sequence Length = 11829 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 8554 gtttatttaataatattttt 8573
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaaattctggtttatttaat 23 |||||||||||||||||||| Sbjct: 1689979 aaaattctggtttatttaat 1689998
>gb|AC158787.14| Mus musculus chromosome 15, clone RP23-136G8, complete sequence Length = 203772 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 caccccacacttctctgtcatgtc 171 ||||||||||||||||||| |||| Sbjct: 30001 caccccacacttctctgtcctgtc 29978
>gb|AY293579.1| Francisella tularensis subsp. novicida strain U112 pathogenicity island, complete sequence Length = 25991 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattctggtttatttaata 24 |||||||||||||||||||| Sbjct: 8718 aaattctggtttatttaata 8737
>ref|XM_414461.1| PREDICTED: Gallus gallus similar to FLJ00023 protein (LOC416129), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tttatttaataatatttttc 33 |||||||||||||||||||| Sbjct: 1010 tttatttaataatatttttc 991
>ref|XM_543995.2| PREDICTED: Canis familiaris similar to Arsenite methyltransferase (S-adenosyl-L-methionine:arsenic(III) methyltransferase) (Methylarsonite methyltransferase) (Cyt19) (LOC486865), mRNA Length = 987 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tctgtcatgtctatcccagt 180 |||||||||||||||||||| Sbjct: 176 tctgtcatgtctatcccagt 157
>emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 in linkage group 7, complete sequence Length = 168537 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 161204 gtttatttaataatattttt 161185
>ref|XM_541709.2| PREDICTED: Canis familiaris similar to potassium channel tetramerisation domain containing 15 (LOC484595), mRNA Length = 852 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 ttgacgtccgcaggaagctc 204 |||||||||||||||||||| Sbjct: 361 ttgacgtccgcaggaagctc 342
>ref|XM_661428.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.80462) partial mRNA Length = 2361 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aacaaaattctggtttattt 20 |||||||||||||||||||| Sbjct: 183 aacaaaattctggtttattt 164
>emb|BX296557.35| Zebrafish DNA sequence from clone CH211-284O1 in linkage group 7, complete sequence Length = 173360 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 147353 gtttatttaataatattttt 147372
>emb|AL662814.5| Human DNA sequence from clone RP11-368E13 on chromosome X, complete sequence Length = 74571 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttatttaataatatttttcc 34 |||||||||||||||||||| Sbjct: 25819 ttatttaataatatttttcc 25838
>emb|AL591686.10| Human DNA sequence from clone RP11-561I11 on chromosome 1 Contains the 3' end of a novel gene (FLJ40773) and two novel genes, complete sequence Length = 175463 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 5 aaattctggtttatttaataatattttt 32 ||||| |||||| ||||||||||||||| Sbjct: 76103 aaattttggtttgtttaataatattttt 76076
>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tatttaataatatttttccttaca 39 |||| ||||||||||||||||||| Sbjct: 37293 tattaaataatatttttccttaca 37316
>emb|BX842647.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 2/11 Length = 346357 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgaaccgatggagcagcgtg 229 |||||||||||||||||||| Sbjct: 26449 cgaaccgatggagcagcgtg 26468
>emb|BX538352.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 3/4 Length = 293050 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tttaataatatttttcctta 37 |||||||||||||||||||| Sbjct: 68741 tttaataatatttttcctta 68722
>gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 243990 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 tcagcttctgagcaagcggcatcc 269 |||||||||||| ||||||||||| Sbjct: 160844 tcagcttctgagtaagcggcatcc 160821
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gcggcatcccggggcagatg 280 |||||||||||||||||||| Sbjct: 504963 gcggcatcccggggcagatg 504982
>emb|BX537263.17| Zebrafish DNA sequence from clone DKEY-208G1 in linkage group 14, complete sequence Length = 166940 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 30473 gtttatttaataatattttt 30454
>ref|XM_627293.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4020), partial mRNA Length = 2352 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aacaaaattctggtttattt 20 |||||||||||||||||||| Sbjct: 183 aacaaaattctggtttattt 164
>gb|AC153576.3| Mus musculus 6 BAC RP23-330J17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215953 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcagcttctgagcaagcggcatcc 269 |||||||||||| ||||||||||| Sbjct: 196845 tcagcttctgagtaagcggcatcc 196868
>emb|BX933213.2| Gallus gallus finished cDNA, clone ChEST509d9 Length = 753 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tttatttaataatatttttc 33 |||||||||||||||||||| Sbjct: 744 tttatttaataatatttttc 725
>emb|BX294669.8| Zebrafish DNA sequence from clone CH211-134K13 in linkage group 9, complete sequence Length = 180734 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 4145 gtttatttaataatattttt 4126
>gb|AC008583.6| Homo sapiens chromosome 3 clone CTC-501D11, complete sequence Length = 122493 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ctctgtcatgtctatcccag 179 |||||||||||||||||||| Sbjct: 49173 ctctgtcatgtctatcccag 49154
>dbj|AB064261.1| Plasmodium falciparum fulmal2 mRNA, complete cds Length = 2460 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 782 gtttatttaataatattttt 763
>gb|AC114261.2| Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence Length = 33651 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 tttatttaataatatttttc 33 |||||||||||||||||||| Sbjct: 31178 tttatttaataatatttttc 31159
>emb|AL773505.5| Mouse DNA sequence from clone RP23-209M19 on chromosome 2, complete sequence Length = 190991 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 tcatgtttccttgggtatggctgt 123 ||||||||||||||| |||||||| Sbjct: 171817 tcatgtttccttggggatggctgt 171840
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattctggtttatttaata 24 |||||||||||||||||||| Sbjct: 1102207 aaattctggtttatttaata 1102226 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattctggtttatttaata 24 |||||||||||||||||||| Sbjct: 107568 aaattctggtttatttaata 107587
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaattctggtttatttaata 24 |||||||||||||||||||| Sbjct: 1790035 aaattctggtttatttaata 1790016 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 aaattctggtttatttaata 24 |||||||||||||||||||| Sbjct: 1396691 aaattctggtttatttaata 1396672
>emb|AL954132.14| Zebrafish DNA sequence from clone DKEY-32N7, complete sequence Length = 197745 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gtttatttaataatattttt 32 |||||||||||||||||||| Sbjct: 62372 gtttatttaataatattttt 62353
>dbj|AP004954.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21G09, TM0131, complete sequence Length = 93645 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 aataatatttttccttacag 40 |||||||||||||||||||| Sbjct: 82220 aataatatttttccttacag 82201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,089,211 Number of Sequences: 3902068 Number of extensions: 3089211 Number of successful extensions: 70393 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70187 Number of HSP's gapped (non-prelim): 206 length of query: 343 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 321 effective length of database: 17,147,199,772 effective search space: 5504251126812 effective search space used: 5504251126812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)