ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48e04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192402.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 278 bits (140), Expect = 2e-71 Identities = 293/344 (85%) Strand = Plus / Minus Query: 68 agcaacatgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttg 127 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 1163 agcagcatgtcgttccaggcatcgaccggccccggcaggcaccagtggatgcagtcattg 1104 Query: 128 gagagtacccgcttctcttccggccaatgcccgtaccggctcgggtgtccgtctggccgc 187 | || ||||||||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct: 1103 tacagcacccgcttctcgtccggccagtggccgtaccggctcgggtggccgtccggccgg 1044 Query: 188 agcagcatggcgcccgtcgtgtccatgagcaccatgtccactcccgccaccgcggccgct 247 |||||||| ||| | || | ||||||||||||||||||||| || | |||| ||| | Sbjct: 1043 agcagcatcgcggcggtggggtccatgagcaccatgtccaccccgttcgccgccgcctcc 984 Query: 248 ttctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcaccc 307 ||| ||||||||||||||| ||||||||| ||||||||| || ||||||| | | ||| Sbjct: 983 ctctgcgcctccctgaactcctccacctgcgacgtgtagaattccaggtccatgcctccc 924 Query: 308 atcgtcgtctcgttgctccggtacggctgcatccggcggcagtccccgcccttgtcccac 367 || | ||||||||| | || ||||||| || |||| |||||||| ||||||||||||||| Sbjct: 923 atggccgtctcgttccccctgtacggccgcgtccgccggcagtcgccgcccttgtcccac 864 Query: 368 gaccctccctcgaagtgagacatcggcgagagcgtccggacgat 411 | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 863 gcgccgccctcgaagtgcgacatcggcgacagcgtccgcacgat 820 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 437 tcgttgatggcccgaagcgctgtccggaacgccatcc 473 |||||||||||||| ||||| |||||||||||||||| Sbjct: 797 tcgttgatggcccggagcgccgtccggaacgccatcc 761
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 278 bits (140), Expect = 2e-71 Identities = 293/344 (85%) Strand = Plus / Plus Query: 68 agcaacatgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttg 127 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 26408178 agcagcatgtcgttccaggcatcgaccggccccggcaggcaccagtggatgcagtcattg 26408237 Query: 128 gagagtacccgcttctcttccggccaatgcccgtaccggctcgggtgtccgtctggccgc 187 | || ||||||||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct: 26408238 tacagcacccgcttctcgtccggccagtggccgtaccggctcgggtggccgtccggccgg 26408297 Query: 188 agcagcatggcgcccgtcgtgtccatgagcaccatgtccactcccgccaccgcggccgct 247 |||||||| ||| | || | ||||||||||||||||||||| || | |||| ||| | Sbjct: 26408298 agcagcatcgcggcggtggggtccatgagcaccatgtccaccccgttcgccgccgcctcc 26408357 Query: 248 ttctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcaccc 307 ||| ||||||||||||||| ||||||||| ||||||||| || ||||||| | | ||| Sbjct: 26408358 ctctgcgcctccctgaactcctccacctgcgacgtgtagaattccaggtccatgcctccc 26408417 Query: 308 atcgtcgtctcgttgctccggtacggctgcatccggcggcagtccccgcccttgtcccac 367 || | ||||||||| | || ||||||| || |||| |||||||| ||||||||||||||| Sbjct: 26408418 atggccgtctcgttccccctgtacggccgcgtccgccggcagtcgccgcccttgtcccac 26408477 Query: 368 gaccctccctcgaagtgagacatcggcgagagcgtccggacgat 411 | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 26408478 gcgccgccctcgaagtgcgacatcggcgacagcgtccgcacgat 26408521 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Plus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 26395319 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 26395378 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 26395379 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 26395438 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 26395439 gcgacatcggcgacagcatccgcacgat 26395466 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 437 tcgttgatggcccgaagcgctgtccggaacgccatcc 473 |||||||||||||| ||||| |||||||||||||||| Sbjct: 26408544 tcgttgatggcccggagcgccgtccggaacgccatcc 26408580 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Plus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 26395156 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 26395215 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 26395216 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 26395273
>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032K15 Length = 126195 Score = 278 bits (140), Expect = 2e-71 Identities = 293/344 (85%) Strand = Plus / Plus Query: 68 agcaacatgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttg 127 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 82043 agcagcatgtcgttccaggcatcgaccggccccggcaggcaccagtggatgcagtcattg 82102 Query: 128 gagagtacccgcttctcttccggccaatgcccgtaccggctcgggtgtccgtctggccgc 187 | || ||||||||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct: 82103 tacagcacccgcttctcgtccggccagtggccgtaccggctcgggtggccgtccggccgg 82162 Query: 188 agcagcatggcgcccgtcgtgtccatgagcaccatgtccactcccgccaccgcggccgct 247 |||||||| ||| | || | ||||||||||||||||||||| || | |||| ||| | Sbjct: 82163 agcagcatcgcggcggtggggtccatgagcaccatgtccaccccgttcgccgccgcctcc 82222 Query: 248 ttctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcaccc 307 ||| ||||||||||||||| ||||||||| ||||||||| || ||||||| | | ||| Sbjct: 82223 ctctgcgcctccctgaactcctccacctgcgacgtgtagaattccaggtccatgcctccc 82282 Query: 308 atcgtcgtctcgttgctccggtacggctgcatccggcggcagtccccgcccttgtcccac 367 || | ||||||||| | || ||||||| || |||| |||||||| ||||||||||||||| Sbjct: 82283 atggccgtctcgttccccctgtacggccgcgtccgccggcagtcgccgcccttgtcccac 82342 Query: 368 gaccctccctcgaagtgagacatcggcgagagcgtccggacgat 411 | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 82343 gcgccgccctcgaagtgcgacatcggcgacagcgtccgcacgat 82386 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Plus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 69184 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 69243 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 69244 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 69303 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 69304 gcgacatcggcgacagcatccgcacgat 69331 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 437 tcgttgatggcccgaagcgctgtccggaacgccatcc 473 |||||||||||||| ||||| |||||||||||||||| Sbjct: 82409 tcgttgatggcccggagcgccgtccggaacgccatcc 82445 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Plus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 69021 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 69080 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 69081 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 69138
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 278 bits (140), Expect = 2e-71 Identities = 293/344 (85%) Strand = Plus / Plus Query: 68 agcaacatgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttg 127 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 16797 agcagcatgtcgttccaggcatcgaccggccccggcaggcaccagtggatgcagtcattg 16856 Query: 128 gagagtacccgcttctcttccggccaatgcccgtaccggctcgggtgtccgtctggccgc 187 | || ||||||||||| |||||||| || ||||||||||||||||| ||||| ||||| Sbjct: 16857 tacagcacccgcttctcgtccggccagtggccgtaccggctcgggtggccgtccggccgg 16916 Query: 188 agcagcatggcgcccgtcgtgtccatgagcaccatgtccactcccgccaccgcggccgct 247 |||||||| ||| | || | ||||||||||||||||||||| || | |||| ||| | Sbjct: 16917 agcagcatcgcggcggtggggtccatgagcaccatgtccaccccgttcgccgccgcctcc 16976 Query: 248 ttctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcaccc 307 ||| ||||||||||||||| ||||||||| ||||||||| || ||||||| | | ||| Sbjct: 16977 ctctgcgcctccctgaactcctccacctgcgacgtgtagaattccaggtccatgcctccc 17036 Query: 308 atcgtcgtctcgttgctccggtacggctgcatccggcggcagtccccgcccttgtcccac 367 || | ||||||||| | || ||||||| || |||| |||||||| ||||||||||||||| Sbjct: 17037 atggccgtctcgttccccctgtacggccgcgtccgccggcagtcgccgcccttgtcccac 17096 Query: 368 gaccctccctcgaagtgagacatcggcgagagcgtccggacgat 411 | || ||||||||||| ||||||||||| |||||||| ||||| Sbjct: 17097 gcgccgccctcgaagtgcgacatcggcgacagcgtccgcacgat 17140 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Plus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 3938 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 3997 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 3998 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 4057 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 4058 gcgacatcggcgacagcatccgcacgat 4085 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 437 tcgttgatggcccgaagcgctgtccggaacgccatcc 473 |||||||||||||| ||||| |||||||||||||||| Sbjct: 17163 tcgttgatggcccggagcgccgtccggaacgccatcc 17199 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Plus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 3775 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 3834 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 3835 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 3892
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 67.9 bits (34), Expect = 3e-08 Identities = 126/154 (81%), Gaps = 2/154 (1%) Strand = Plus / Plus Query: 259 cctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctc 318 ||||||||| ||||||||| |||||| ||||||||||||||| | |||| |||||| Sbjct: 9218969 cctgaactcctccacctgcgccgtgtggaagtcgaggtccagcccggacatccgcgtctc 9219028 Query: 319 gttgctccg-gtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccct 377 ||| | ||| | ||||| || | || |||||||| |||||||||| |||| ||| |||| Sbjct: 9219029 gtt-cgccgtggacggccgcgtgcgccggcagtcgccgcccttgttccactccccgccct 9219087 Query: 378 cgaagtgagacatcggcgagagcgtccggacgat 411 ||||||| ||| ||||||| ||||| || ||||| Sbjct: 9219088 cgaagtgcgacgtcggcgacagcgtgcgaacgat 9219121 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 250 ctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccag 300 ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| Sbjct: 9233937 ctccgccctcctgaactcctccacctgcaccgtgtggaagtcgaggtccag 9233887 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 9258662 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 9258603 Query: 404 cggacgat 411 || ||||| Sbjct: 9258602 cgcacgat 9258595 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| |||||||||| |||| ||| ||||||||||| ||| ||||||| ||||| Sbjct: 9233852 cggcagtcgccgcccttgttccactccccgccctcgaagtgcgacgtcggcgacagcgtg 9233793 Query: 404 cggacgat 411 || ||||| Sbjct: 9233792 cgcacgat 9233785 Score = 48.1 bits (24), Expect = 0.026 Identities = 54/64 (84%) Strand = Plus / Plus Query: 155 tgcccgtaccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatg 214 |||||||| | ||||||||| ||||| ||||| |||| ||| || ||||||||||||| Sbjct: 9218865 tgcccgtatctgctcgggtgcccgtccggccggagcaccatcgccgccgtcgtgtccatc 9218924 Query: 215 agca 218 |||| Sbjct: 9218925 agca 9218928 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 9215774 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 9215832 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 9258857 tgcccgtaccggctcgggtgcccgtc 9258832
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0662B01 Length = 155913 Score = 67.9 bits (34), Expect = 3e-08 Identities = 126/154 (81%), Gaps = 2/154 (1%) Strand = Plus / Plus Query: 259 cctgaactcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctc 318 ||||||||| ||||||||| |||||| ||||||||||||||| | |||| |||||| Sbjct: 112991 cctgaactcctccacctgcgccgtgtggaagtcgaggtccagcccggacatccgcgtctc 113050 Query: 319 gttgctccg-gtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccct 377 ||| | ||| | ||||| || | || |||||||| |||||||||| |||| ||| |||| Sbjct: 113051 gtt-cgccgtggacggccgcgtgcgccggcagtcgccgcccttgttccactccccgccct 113109 Query: 378 cgaagtgagacatcggcgagagcgtccggacgat 411 ||||||| ||| ||||||| ||||| || ||||| Sbjct: 113110 cgaagtgcgacgtcggcgacagcgtgcgaacgat 113143 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 250 ctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccag 300 ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| Sbjct: 127959 ctccgccctcctgaactcctccacctgcaccgtgtggaagtcgaggtccag 127909 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 152684 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 152625 Query: 404 cggacgat 411 || ||||| Sbjct: 152624 cgcacgat 152617 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| |||||||||| |||| ||| ||||||||||| ||| ||||||| ||||| Sbjct: 127874 cggcagtcgccgcccttgttccactccccgccctcgaagtgcgacgtcggcgacagcgtg 127815 Query: 404 cggacgat 411 || ||||| Sbjct: 127814 cgcacgat 127807 Score = 48.1 bits (24), Expect = 0.026 Identities = 54/64 (84%) Strand = Plus / Plus Query: 155 tgcccgtaccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatg 214 |||||||| | ||||||||| ||||| ||||| |||| ||| || ||||||||||||| Sbjct: 112887 tgcccgtatctgctcgggtgcccgtccggccggagcaccatcgccgccgtcgtgtccatc 112946 Query: 215 agca 218 |||| Sbjct: 112947 agca 112950 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 109796 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 109854 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 152879 tgcccgtaccggctcgggtgcccgtc 152854
>ref|NM_192398.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1215 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Minus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 1000 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 941 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 940 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 881 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 880 gcgacatcggcgacagcatccgcacgat 853 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 1163 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 1104 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 1103 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 1046
>gb|BT017395.1| Zea mays clone EL01N0328B07.c mRNA sequence Length = 1004 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 107 caccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccgtaccgg 166 ||||||||||||||||||||| |||| | |||||| | ||||| |||||||| ||| Sbjct: 773 caccagtggatgcagtcgttgtagagctgcaccttctcgttgggccagtgcccgtagcgg 714 Query: 167 ctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 || ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 713 ctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 662
>dbj|AK104312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G10, full insert sequence Length = 1686 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Minus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 1247 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 1188 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 1187 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 1128 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 1127 gcgacatcggcgacagcatccgcacgat 1100 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 1410 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 1351 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 1350 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 1293
>dbj|AK103547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132E17, full insert sequence Length = 1574 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Minus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 1248 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 1189 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 1188 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 1129 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 1128 gcgacatcggcgacagcatccgcacgat 1101 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 1411 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 1352 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 1351 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 1294
>dbj|AK061145.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D04, full insert sequence Length = 1741 Score = 63.9 bits (32), Expect = 4e-07 Identities = 119/148 (80%) Strand = Plus / Minus Query: 264 actcgtccacctgccccgtgtagaagtcgaggtccaggtcacccatcgtcgtctcgttgc 323 |||| |||| |||| |||||||||||| |||||| | | ||||| ||||||||||| Sbjct: 1249 actcctccatctgcgccgtgtagaagtgcaggtcccgcccctccatcaccgtctcgttgc 1190 Query: 324 tccggtacggctgcatccggcggcagtccccgcccttgtcccacgaccctccctcgaagt 383 ||||| ||||||| |||| ||||| ||||||| |||||||| ||| |||||||| Sbjct: 1189 tccggagcggctgcgtccgcttgcagttgccgccctggtcccacgtcccgttctcgaagt 1130 Query: 384 gagacatcggcgagagcgtccggacgat 411 | ||||||||||| ||| |||| ||||| Sbjct: 1129 gcgacatcggcgacagcatccgcacgat 1102 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 1412 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 1353 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 1352 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 1295
>gb|AY108652.1| Zea mays PCO078358 mRNA sequence Length = 347 Score = 63.9 bits (32), Expect = 4e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 107 caccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccgtaccgg 166 ||||||||||||||||||||| |||| | |||||| | ||||| |||||||| ||| Sbjct: 146 caccagtggatgcagtcgttgtagagctgcaccttctcgttgggccagtgcccgtagcgg 87 Query: 167 ctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 || ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 86 ctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 35
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 250 ctccgcctccctgaactcgtccacctgccccgtgtagaagtcgaggtccag 300 ||||||| ||||||||| ||||||||| |||||| ||||||||||||||| Sbjct: 1278 ctccgccctcctgaactcctccacctgcaccgtgtggaagtcgaggtccag 1228 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 26003 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 25944 Query: 404 cggacgat 411 || ||||| Sbjct: 25943 cgcacgat 25936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| |||||||||| |||| ||| ||||||||||| ||| ||||||| ||||| Sbjct: 1193 cggcagtcgccgcccttgttccactccccgccctcgaagtgcgacgtcggcgacagcgtg 1134 Query: 404 cggacgat 411 || ||||| Sbjct: 1133 cgcacgat 1126 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 26198 tgcccgtaccggctcgggtgcccgtc 26173
>ref|NM_185776.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1221 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 911 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 852 Query: 404 cggacgat 411 || ||||| Sbjct: 851 cgcacgat 844 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 1106 tgcccgtaccggctcgggtgcccgtc 1081
>dbj|AK108774.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H10, full insert sequence Length = 1510 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 243 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 302 Query: 404 cggacgat 411 || ||||| Sbjct: 303 cgcacgat 310 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 48 tgcccgtaccggctcgggtgcccgtc 73
>dbj|AK106309.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D01, full insert sequence Length = 1584 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 344 cggcagtccccgcccttgtcccacgaccctccctcgaagtgagacatcggcgagagcgtc 403 |||||||| ||||||||||||||| || ||||||||||| ||| ||||||| ||||| Sbjct: 1057 cggcagtcgccgcccttgtcccactcgccgccctcgaagtgcgacgtcggcgacagcgtg 998 Query: 404 cggacgat 411 || ||||| Sbjct: 997 cgcacgat 990 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtc 180 |||||||||||||||||||| ||||| Sbjct: 1252 tgcccgtaccggctcgggtgcccgtc 1227
>ref|XM_467595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtctggccgcag 189 |||||||||||||||||||| ||||| |||||||| Sbjct: 1436 tgcccgtaccggctcgggtgcccgtccggccgcag 1402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtctggccgcag 189 |||||||||||||||||||| ||||| |||||||| Sbjct: 30362822 tgcccgtaccggctcgggtgcccgtccggccgcag 30362788 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 77 tcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcg 124 ||||||||||| ||||| || || |||| |||||||||| ||||||| Sbjct: 30364984 tcgttccaggcgtcgacggggccaggcaagcaccagtggacgcagtcg 30365031
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 155 tgcccgtaccggctcgggtgtccgtctggccgcag 189 |||||||||||||||||||| ||||| |||||||| Sbjct: 43682 tgcccgtaccggctcgggtgcccgtccggccgcag 43648 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 77 tcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcg 124 ||||||||||| ||||| || || |||| |||||||||| ||||||| Sbjct: 45844 tcgttccaggcgtcgacggggccaggcaagcaccagtggacgcagtcg 45891
>dbj|AK058693.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B06, full insert sequence Length = 316 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Minus Query: 101 ggcagacaccagtggatgcagtcgttggagagtacccgcttctcttccggccaatgcccg 160 ||||| ||||||||||||||||||||| |||| | ||||| | |||| || ||| Sbjct: 120 ggcaggcaccagtggatgcagtcgttgtagagctgcaccttctggttcggcaggtggccg 61 Query: 161 taccggctcgggtgtccgtctggccgcagcagcatggcgcccgtcgtgtccatgagca 218 |||||||| ||||| ||||| ||||||| |||||| || |||| | ||||||||||| Sbjct: 60 taccggctggggtggccgtcgggccgcatcagcatcgccgccgtggcgtccatgagca 3
>gb|AC104847.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0480H08, complete sequence Length = 156301 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 113703 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 113761
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029K08, complete sequence Length = 136687 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 13981 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 14039
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 21356231 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 21356289
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 73 catgtcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcgttggaga 131 ||||||||||||||| ||||| | ||||| | |||||||| | |||||||||||||| Sbjct: 21666430 catgtcgttccaggcgtcgacggcgccggggacgcaccagtgcacgcagtcgttggaga 21666488
>gb|AY223810.1| Rhodococcus erythropolis linear plasmid pBD2, complete sequence Length = 210205 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 ttcacgctgccgtgatcgttg 442 ||||||||||||||||||||| Sbjct: 61677 ttcacgctgccgtgatcgttg 61657
>ref|XM_467596.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1248 Score = 40.1 bits (20), Expect = 6.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 77 tcgttccaggcatcgaccggcccgggcagacaccagtggatgcagtcg 124 ||||||||||| ||||| || || |||| |||||||||| ||||||| Sbjct: 1220 tcgttccaggcgtcgacggggccaggcaagcaccagtggacgcagtcg 1173
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gcagcagcatggcgcccgtc 205 |||||||||||||||||||| Sbjct: 1520391 gcagcagcatggcgcccgtc 1520372
>ref|XM_584601.2| PREDICTED: Bos taurus similar to pannexin 2 (LOC539070), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 gagcaccatgtccactcccgccac 237 |||||||| ||||||||||||||| Sbjct: 903 gagcaccacgtccactcccgccac 880
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ctttggccttcacgctgccg 433 |||||||||||||||||||| Sbjct: 3577180 ctttggccttcacgctgccg 3577161
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ccgcggccgctttctccgcc 256 |||||||||||||||||||| Sbjct: 4275180 ccgcggccgctttctccgcc 4275199
>gb|AY518274.1| Treponema porcinum strain 14V28 16S ribosomal RNA gene, partial sequence Length = 1426 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gccgctttctccgcctccct 261 |||||||||||||||||||| Sbjct: 110 gccgctttctccgcctccct 91
>emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 3/17 Length = 342905 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gctgccgtgatcgttgatgg 446 |||||||||||||||||||| Sbjct: 334095 gctgccgtgatcgttgatgg 334114
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 accggcccgggcagacacca 111 |||||||||||||||||||| Sbjct: 40170 accggcccgggcagacacca 40151
>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence Length = 148650 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 atgtcgttccaggcatcgaccggc 97 ||||||| |||||||||||||||| Sbjct: 25846 atgtcgtgccaggcatcgaccggc 25869
>gb|AC158191.2| Selaginella moellendorffii clone JGIASXY-5N22, complete sequence Length = 30068 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 tcgaccggcccgggcagacaccagtgga 116 |||| |||||||||||| |||||||||| Sbjct: 16499 tcgatcggcccgggcaggcaccagtgga 16526 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,715,145 Number of Sequences: 3902068 Number of extensions: 2715145 Number of successful extensions: 44350 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43966 Number of HSP's gapped (non-prelim): 377 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
