>SKI8_YEAST (Q02793) Antiviral protein SKI8|
          Length = 397

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 333 EGIKACGWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVAD 205
           E + + GWDG+L+F + K +  +  L  +  D  +EE  +  D
Sbjct: 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346

>SYI_STRR6 (Q8DNW4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 930

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 360 FVERARAYAEGIKACGWDGELQFHET-KGEAHVYFLPKYDSDTAVEELAMVADFVRRC*G 184
           FV  A       +  GW  ++Q  ET +G+   + + ++  DTAVEEL ++ D V    G
Sbjct: 263 FVVAAELLTSLSEKFGW-ADVQVLETYRGQELNHIVTEHPWDTAVEELVILGDHVTTDSG 321

Query: 183 SACFHSA 163
           +   H+A
Sbjct: 322 TGIVHTA 328

>SYI_STRPN (Q9ZHB3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 930

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 360 FVERARAYAEGIKACGWDGELQFHET-KGEAHVYFLPKYDSDTAVEELAMVADFVRRC*G 184
           FV  A       +  GW  ++Q  ET +G+   + + ++  DTAVEEL ++ D V    G
Sbjct: 263 FVVAAELLTSLSEKFGW-ADVQVLETYRGQELNHIVTEHPWDTAVEELVILGDHVTTDSG 321

Query: 183 SACFHSA 163
           +   H+A
Sbjct: 322 TGIVHTA 328

>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 23/74 (31%), Positives = 30/74 (40%)
 Frame = -3

Query: 459 GPDHPYINPATAPEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIKACGWDGELQFHETK 280
           GP+  Y   A    + R L +   +V   E  W    ARA+A+  + C W   L      
Sbjct: 601 GPERHYAAGAHMCAQARGLQAFVRVVPPPERPWADGGARAWAKFFRGCAWAQRL-----L 655

Query: 279 GEAHVYFLPKYDSD 238
           GE  V  LP  D D
Sbjct: 656 GEPAVMHLPYTDGD 669

>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC|
           3.4.22.-) (p150); RNA-directed RNA polymerase/helicase
           (EC 2.7.7.48) (EC 3.6.1.-) (p90)]
          Length = 2115

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
 Frame = -3

Query: 459 GPDHPYINPATAPEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIKACGWDGELQFHETK 280
           GP+  +   A    + R L +   +V   E  W    ARA+A+  + C W   L      
Sbjct: 600 GPERHFAAGAHMCAQARGLQAFVRVVPPPERPWADGGARAWAKFFRGCAWAQRL-----L 654

Query: 279 GEAHVYFLPKYDSD----------TAVEELAMVADFVRRC*GSACF 172
           GE  V  LP  D D          T  ++ A +A  VR   G A F
Sbjct: 655 GEPAVMHLPYTDGDVPQLIALALRTLAQQGAALALSVRDLPGGAAF 700

>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L + R L    +  W V+    +  G+K
Sbjct: 640 KIGPENPYNTPVFAIKKKDSTKWRKLVNFRELNKRTQDFWEVQLGIPHPAGLK 692

>HEMA_CVRSD (Q9IKD2) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 439

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 27  RVNCNQNKSSSTSLAQQCKY*SFRMNSTNSQQKTHEIHH 143
           R N  +   + T++A Q  Y  FR  S +    TH++HH
Sbjct: 307 RWNSTRQSDNMTAVACQLPYCFFRNTSADYSGDTHDVHH 345

>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1427

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 628 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHTAGLK 680

>HEMA_CVMS (P31614) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 430

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 27  RVNCNQNKSSSTSLAQQCKY*SFRMNSTNSQQKTHEIHH 143
           R N  +   + T++A Q  Y  FR  S +    TH++HH
Sbjct: 304 RWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHH 342

>SYI_STRPM (Q48SL8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 933

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 315 GWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVADFVRRC*GSACFHSA 163
           GW+        KG    Y + ++  DT VEEL ++ D V    G+   H+A
Sbjct: 278 GWESFETLASHKGADLEYIVTEHPWDTDVEELVILGDHVTLESGTGIVHTA 328

>SYI_STRP8 (Q8P068) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 933

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 315 GWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVADFVRRC*GSACFHSA 163
           GW+        KG    Y + ++  DT VEEL ++ D V    G+   H+A
Sbjct: 278 GWESFETLASHKGADLEYIVTEHPWDTDVEELVILGDHVTLESGTGIVHTA 328

>SYI_STRP6 (Q5XB14) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 933

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 315 GWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVADFVRRC*GSACFHSA 163
           GW+        KG    Y + ++  DT VEEL ++ D V    G+   H+A
Sbjct: 278 GWESFETLASHKGADLEYIVTEHPWDTDVEELVILGDHVTLESGTGIVHTA 328

>SYI_STRP3 (Q8K6S2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 933

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 315 GWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVADFVRRC*GSACFHSA 163
           GW+        KG    Y + ++  DT VEEL ++ D V    G+   H+A
Sbjct: 278 GWESFETLASHKGADLEYIVTEHPWDTDVEELVILGDHVTLESGTGIVHTA 328

>SYI_STRP1 (Q99YW3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 933

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 315 GWDGELQFHETKGEAHVYFLPKYDSDTAVEELAMVADFVRRC*GSACFHSA 163
           GW+        KG    Y + ++  DT VEEL ++ D V    G+   H+A
Sbjct: 278 GWESFETLASHKGADLEYIVTEHPWDTDVEELVILGDHVTLESGTGIVHTA 328

>HEMA_CVMJH (Q83356) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein) (2B protein)
          Length = 439

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 27  RVNCNQNKSSSTSLAQQCKY*SFRMNSTNSQQKTHEIHH 143
           R N  +   + T++A Q  Y  FR  S +    TH++HH
Sbjct: 307 RWNSTRQSDNMTAVACQLPYCFFRNTSADYSGGTHDVHH 345

>MGAT5_RAT (Q08834) Alpha-1,6-mannosylglycoprotein|
           6-beta-N-acetylglucosaminyltransferase V (EC 2.4.1.155)
           (Mannoside acetylglucosaminyltransferase 5)
           (Alpha-mannoside
           beta-1,6-N-acetylglucosaminyltransferase)
           (N-acetylglucosaminyl-transferase V) (GNT-V)
          Length = 740

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 162 IKEHMICDVFRVFSAVNLWSSYERINICIVEQDLLMNSCSD-YS*HERINIC 10
           +K  +IC    ++  + + S Y +   C+ + DLL+ SC+  +  H+RI  C
Sbjct: 674 LKYKVICQSSELYKDILVPSFYPKSKHCVFQGDLLLFSCAGAHPTHQRICPC 725

>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1435

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 636 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 688

>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 647 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 699

>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1440

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 641 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLK 693

>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 647 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 699

>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 647 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNRRTQDFWEVQLGIPHPAGLK 699

>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 647 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 699

>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 635 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 687

>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 635 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 687

>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 639 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNRRTQDFWEVQLGIPHPAGLK 691

>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1434

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 635 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 687

>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1436

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -3

Query: 465 KFGPDHPYINPATA-----PEEWRRLGSGRVLVTTAEHCWFVERARAYAEGIK 322
           K GP++PY  P  A       +WR+L   R L    +  W V+    +  G+K
Sbjct: 637 KIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK 689


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,427,198
Number of Sequences: 219361
Number of extensions: 881769
Number of successful extensions: 2854
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2854
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)