ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
2dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 252 9e-64
3dbj|AK062676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 9e-64
4ref|XM_550401.1| Oryza sativa (japonica cultivar-group), mRNA 178 1e-41
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
6dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
7dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
8gb|AY107389.1| Zea mays PCO090360 mRNA sequence 133 6e-28
9emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 1.6
10emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 i... 42 1.6
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
12emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 42 1.6
13ref|XM_482924.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
15gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 geno... 40 6.4
16gb|AE004149.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 6.4
17emb|AL450999.5| Human DNA sequence from clone RP11-152M6 on chro... 40 6.4
18ref|XM_967197.1| PREDICTED: Tribolium castaneum similar to CG700... 40 6.4
19emb|AL591981.1| Listeria monocytogenes strain EGD, complete geno... 40 6.4
20gb|DQ122919.1| Chlamydomonas incerta mitochondrial succinoglycan... 40 6.4
21gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.4
22gb|AC016525.11| Homo sapiens chromosome 15 clone RP11-358M11 map... 40 6.4
23gb|AC008131.25| Homo sapiens chromosome 15 clone ctd-2265b18 map... 40 6.4
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
26gb|AC161477.4| Pan troglodytes BAC clone CH251-168J20 from chrom... 40 6.4
27gb|AC010679.6| Homo sapiens BAC clone RP11-128O11 from 2, comple... 40 6.4
28gb|AC097463.2| Homo sapiens BAC clone RP11-18O19 from 2, complet... 40 6.4
29dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
30gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5,... 40 6.4
31dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, ... 40 6.4
32gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete... 40 6.4
33dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.4
34emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1... 40 6.4

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  252 bits (127), Expect = 9e-64
 Identities = 244/283 (86%)
 Strand = Plus / Plus

                                                                            
Query: 187      tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggcggtgtcggagtc 246
                ||||||||||| ||||||||| | ||| | ||||||||||| ||||||  ||||| ||||
Sbjct: 17406313 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggcattgtcgcagtc 17406372

                                                                            
Query: 247      gtacttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgcc 306
                |  |||||||| |||| |||||||  ||||||| | ||||||||||| ||  | ||||||
Sbjct: 17406373 gggcttgggcaagaagaagacatggccctcgccatcggtctcgtggagctccacctcgcc 17406432

                                                                            
Query: 307      gtcccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagca 366
                |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 17406433 gtcccacccgcacttcttgatcccctccgcgtacgcgcgcgccctctccacgaaccagca 17406492

                                                                            
Query: 367      gtgctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccggggc 426
                |||||||||||| |||||||| |||||||||  ||||||| |||||||||||||||| | 
Sbjct: 17406493 gtgctccgccgtagtgaccaggacgcggccggccccgagctgcctccactcctccggcga 17406552

                                                           
Query: 427      cgtcgccgggttgatgtacgggtggtcgggcccgaacttgccg 469
                || |  |||||||| | ||||||||||| | |||| |||||||
Sbjct: 17406553 cgccagcgggttgacgcacgggtggtcgaggccgagcttgccg 17406595



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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score =  252 bits (127), Expect = 9e-64
 Identities = 244/283 (86%)
 Strand = Plus / Plus

                                                                          
Query: 187    tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggcggtgtcggagtc 246
              ||||||||||| ||||||||| | ||| | ||||||||||| ||||||  ||||| ||||
Sbjct: 130226 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggcattgtcgcagtc 130285

                                                                          
Query: 247    gtacttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgcc 306
              |  |||||||| |||| |||||||  ||||||| | ||||||||||| ||  | ||||||
Sbjct: 130286 gggcttgggcaagaagaagacatggccctcgccatcggtctcgtggagctccacctcgcc 130345

                                                                          
Query: 307    gtcccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagca 366
              |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 130346 gtcccacccgcacttcttgatcccctccgcgtacgcgcgcgccctctccacgaaccagca 130405

                                                                          
Query: 367    gtgctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccggggc 426
              |||||||||||| |||||||| |||||||||  ||||||| |||||||||||||||| | 
Sbjct: 130406 gtgctccgccgtagtgaccaggacgcggccggccccgagctgcctccactcctccggcga 130465

                                                         
Query: 427    cgtcgccgggttgatgtacgggtggtcgggcccgaacttgccg 469
              || |  |||||||| | ||||||||||| | |||| |||||||
Sbjct: 130466 cgccagcgggttgacgcacgggtggtcgaggccgagcttgccg 130508



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>dbj|AK062676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G12, full
            insert sequence
          Length = 1229

 Score =  252 bits (127), Expect = 9e-64
 Identities = 244/283 (86%)
 Strand = Plus / Minus

                                                                        
Query: 187  tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggcggtgtcggagtc 246
            ||||||||||| ||||||||| | ||| | ||||||||||| ||||||  ||||| ||||
Sbjct: 1057 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggcattgtcgcagtc 998

                                                                        
Query: 247  gtacttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgcc 306
            |  |||||||| |||| |||||||  ||||||| | ||||||||||| ||  | ||||||
Sbjct: 997  gggcttgggcaagaagaagacatggccctcgccatcggtctcgtggagctccacctcgcc 938

                                                                        
Query: 307  gtcccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagca 366
            |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 937  gtcccacccgcacttcttgatcccctccgcgtacgcgcgcgccctctccacgaaccagca 878

                                                                        
Query: 367  gtgctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccggggc 426
            |||||||||||| |||||||| |||||||||  ||||||| |||||||||||||||| | 
Sbjct: 877  gtgctccgccgtagtgaccaggacgcggccggccccgagctgcctccactcctccggcga 818

                                                       
Query: 427  cgtcgccgggttgatgtacgggtggtcgggcccgaacttgccg 469
            || |  |||||||| | ||||||||||| | |||| |||||||
Sbjct: 817  cgccagcgggttgacgcacgggtggtcgaggccgagcttgccg 775



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>ref|XM_550401.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 441

 Score =  178 bits (90), Expect = 1e-41
 Identities = 153/174 (87%)
 Strand = Plus / Plus

                                                                       
Query: 250 cttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgccgtc 309
           |||||||| |||| |||||||  ||||||||| ||||||||||||||  |||||||||||
Sbjct: 181 cttgggcaagaagaagacatggccctcgccctcggtctcgtggaactccagctcgccgtc 240

                                                                       
Query: 310 ccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagcagtg 369
           |||| |||||  |||||||||||||||||||| ||| |||| ||||||||||||| ||||
Sbjct: 241 ccactcgcacttcttgatcccctccgcgtacgagcgtgccctctccacgaaccagtagtg 300

                                                                 
Query: 370 ctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccgg 423
            ||||||||||||||||| ||||||| |  || |||| ||||||||||||||||
Sbjct: 301 atccgccgtggtgaccaggacgcggctggccctgagctgcctccactcctccgg 354



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  178 bits (90), Expect = 1e-41
 Identities = 153/174 (87%)
 Strand = Plus / Plus

                                                                           
Query: 250     cttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgccgtc 309
               |||||||| |||| |||||||  ||||||||| ||||||||||||||  |||||||||||
Sbjct: 4277853 cttgggcaagaagaagacatggccctcgccctcggtctcgtggaactccagctcgccgtc 4277912

                                                                           
Query: 310     ccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagcagtg 369
               |||| |||||  |||||||||||||||||||| ||| |||| ||||||||||||| ||||
Sbjct: 4277913 ccactcgcacttcttgatcccctccgcgtacgagcgtgccctctccacgaaccagtagtg 4277972

                                                                     
Query: 370     ctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccgg 423
                ||||||||||||||||| ||||||| |  || |||| ||||||||||||||||
Sbjct: 4277973 atccgccgtggtgaccaggacgcggctggccctgagctgcctccactcctccgg 4278026



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 187     tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggc 234
               ||||||||||| ||||||||| | ||| | ||||||||||| ||||||
Sbjct: 4276520 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggc 4276567



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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1174_D05
          Length = 128525

 Score =  178 bits (90), Expect = 1e-41
 Identities = 153/174 (87%)
 Strand = Plus / Plus

                                                                          
Query: 250    cttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgccgtc 309
              |||||||| |||| |||||||  ||||||||| ||||||||||||||  |||||||||||
Sbjct: 115820 cttgggcaagaagaagacatggccctcgccctcggtctcgtggaactccagctcgccgtc 115879

                                                                          
Query: 310    ccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagcagtg 369
              |||| |||||  |||||||||||||||||||| ||| |||| ||||||||||||| ||||
Sbjct: 115880 ccactcgcacttcttgatcccctccgcgtacgagcgtgccctctccacgaaccagtagtg 115939

                                                                    
Query: 370    ctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccgg 423
               ||||||||||||||||| ||||||| |  || |||| ||||||||||||||||
Sbjct: 115940 atccgccgtggtgaccaggacgcggctggccctgagctgcctccactcctccgg 115993



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 187    tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggc 234
              ||||||||||| ||||||||| | ||| | ||||||||||| ||||||
Sbjct: 114487 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggc 114534



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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score =  178 bits (90), Expect = 1e-41
 Identities = 153/174 (87%)
 Strand = Plus / Plus

                                                                         
Query: 250   cttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcgccgtc 309
             |||||||| |||| |||||||  ||||||||| ||||||||||||||  |||||||||||
Sbjct: 57623 cttgggcaagaagaagacatggccctcgccctcggtctcgtggaactccagctcgccgtc 57682

                                                                         
Query: 310   ccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccagcagtg 369
             |||| |||||  |||||||||||||||||||| ||| |||| ||||||||||||| ||||
Sbjct: 57683 ccactcgcacttcttgatcccctccgcgtacgagcgtgccctctccacgaaccagtagtg 57742

                                                                   
Query: 370   ctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccgg 423
              ||||||||||||||||| ||||||| |  || |||| ||||||||||||||||
Sbjct: 57743 atccgccgtggtgaccaggacgcggctggccctgagctgcctccactcctccgg 57796



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 187   tcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggc 234
             ||||||||||| ||||||||| | ||| | ||||||||||| ||||||
Sbjct: 56290 tcaacagcgccggacgaaatcggtcacgacggcgagctccttgacggc 56337



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>gb|AY107389.1| Zea mays PCO090360 mRNA sequence
          Length = 636

 Score =  133 bits (67), Expect = 6e-28
 Identities = 196/239 (82%)
 Strand = Plus / Plus

                                                                       
Query: 185 cctcaacagcgcctgacgaaatccgccaccatggcgagctcctcgacggcggtgtcggag 244
           ||||||||||||| |||||| || ||||| | |||||||||||  |||||  | |||  |
Sbjct: 299 cctcaacagcgccggacgaattcggccacgagggcgagctccttcacggctttttcgctg 358

                                                                       
Query: 245 tcgtacttgggcaggaagtagacatgcgcctcgcccttggtctcgtggaactggagctcg 304
            |||  || |||| |||| |||| |||||||| ||||||||||||| ||||| |||||| 
Sbjct: 359 ccgtgtttaggcaagaagaagacgtgcgcctcacccttggtctcgtagaactcgagctcc 418

                                                                       
Query: 305 ccgtcccacccgcacgccttgatcccctccgcgtacgcgcgcgcccgctccacgaaccag 364
           || ||||| ||||||  |||||| ||||| ||||| || |  |||| |||||||||||||
Sbjct: 419 ccctcccagccgcacttcttgattccctctgcgtaagcccttgccctctccacgaaccag 478

                                                                      
Query: 365 cagtgctccgccgtggtgaccagcacgcggccgctcccgagccgcctccactcctccgg 423
           || || ||||||||||| ||||||||||||| |   || ||| ||||||||||||||||
Sbjct: 479 cactggtccgccgtggtcaccagcacgcggcgggaaccaagctgcctccactcctccgg 537



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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete
              sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     tcgtgttaactgtaatcagaa 46
              |||||||||||||||||||||
Sbjct: 782814 tcgtgttaactgtaatcagaa 782834



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>emb|CR385065.21| Zebrafish DNA sequence from clone CH211-232F6 in linkage group 6,
              complete sequence
          Length = 194459

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    cagaaaacacacgaaatacat 140
              |||||||||||||||||||||
Sbjct: 184765 cagaaaacacacgaaatacat 184745



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 341     gcgcgcgcccgctccacgaac 361
               |||||||||||||||||||||
Sbjct: 1474276 gcgcgcgcccgctccacgaac 1474256



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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
             complete sequence
          Length = 181060

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   cagaaaacacacgaaatacat 140
             |||||||||||||||||||||
Sbjct: 43073 cagaaaacacacgaaatacat 43093



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>ref|XM_482924.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 383 accagcacgcggccgctcccgagccgcctccactcc 418
           |||||||||||  ||| ||||||||||| |||||||
Sbjct: 842 accagcacgcgcgcgcgcccgagccgccgccactcc 807



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 130      acgaaatacatcacaaatca 149
                ||||||||||||||||||||
Sbjct: 14981595 acgaaatacatcacaaatca 14981614



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>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete
             sequence
          Length = 137184

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   acgaaatacatcacaaatca 149
             ||||||||||||||||||||
Sbjct: 61167 acgaaatacatcacaaatca 61148



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>gb|AE004149.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 57
            of 251 of the complete chromosome
          Length = 11960

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   cagaacaagagttcatcaac 61
            ||||||||||||||||||||
Sbjct: 2426 cagaacaagagttcatcaac 2445



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>emb|AL450999.5| Human DNA sequence from clone RP11-152M6 on chromosome 1 Contains the
             OR1C1 gene for olfactory receptor, family 1, subfamily C,
             member 1 and a  7 transmembrane receptor (rhodopsin
             family) protein pseudogene, complete sequence
          Length = 31887

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttgctcaacaatgcaaatat 86
             ||||||||||||||||||||
Sbjct: 27581 ttgctcaacaatgcaaatat 27562



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>ref|XM_967197.1| PREDICTED: Tribolium castaneum similar to CG7005-PA (LOC661007),
           mRNA
          Length = 2091

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 tcggagtcgtacttgggcag 258
           ||||||||||||||||||||
Sbjct: 269 tcggagtcgtacttgggcag 250



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>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12
          Length = 347050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tatgcaaatattgatccttt 26
             ||||||||||||||||||||
Sbjct: 92778 tatgcaaatattgatccttt 92759



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>gb|DQ122919.1| Chlamydomonas incerta mitochondrial succinoglycan biosynthesis
           protein-related protein mRNA, partial cds; nuclear gene
           for mitochondrial product
          Length = 603

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 397 gctcccgagccgcctccactcctc 420
           ||||||||||||| ||||||||||
Sbjct: 116 gctcccgagccgcttccactcctc 93



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 178     agcagatcctcaacagcgcc 197
               ||||||||||||||||||||
Sbjct: 5462211 agcagatcctcaacagcgcc 5462230



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>gb|AC016525.11| Homo sapiens chromosome 15 clone RP11-358M11 map 15q21.3, complete
              sequence
          Length = 256019

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     gatcctttcgtatgaactcc 107
              ||||||||||||||||||||
Sbjct: 127545 gatcctttcgtatgaactcc 127564



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>gb|AC008131.25| Homo sapiens chromosome 15 clone ctd-2265b18 map 15q21, complete
             sequence
          Length = 131891

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gatcctttcgtatgaactcc 107
             ||||||||||||||||||||
Sbjct: 59681 gatcctttcgtatgaactcc 59662



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 383      accagcacgcggccgctcccgagccgcctccactcc 418
                |||||||||||  ||| ||||||||||| |||||||
Sbjct: 23396037 accagcacgcgcgcgcgcccgagccgccgccactcc 23396072



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 130      acgaaatacatcacaaatca 149
                ||||||||||||||||||||
Sbjct: 14976129 acgaaatacatcacaaatca 14976148



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>gb|AC161477.4| Pan troglodytes BAC clone CH251-168J20 from chromosome unknown,
             complete sequence
          Length = 205823

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttgctcaacaatgcaaatat 86
             ||||||||||||||||||||
Sbjct: 46265 ttgctcaacaatgcaaatat 46246



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>gb|AC010679.6| Homo sapiens BAC clone RP11-128O11 from 2, complete sequence
          Length = 188937

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tgctgaatgaaagcaagcag 182
             ||||||||||||||||||||
Sbjct: 59851 tgctgaatgaaagcaagcag 59832



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>gb|AC097463.2| Homo sapiens BAC clone RP11-18O19 from 2, complete sequence
          Length = 158475

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttgctcaacaatgcaaatat 86
             ||||||||||||||||||||
Sbjct: 41306 ttgctcaacaatgcaaatat 41287



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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 383   accagcacgcggccgctcccgagccgcctccactcc 418
             |||||||||||  ||| ||||||||||| |||||||
Sbjct: 77874 accagcacgcgcgcgcgcccgagccgccgccactcc 77909



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>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence
          Length = 197778

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gctgaatgaaagcaagcaga 183
           ||||||||||||||||||||
Sbjct: 117 gctgaatgaaagcaagcaga 98



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>dbj|BS000007.1| Pan troglodytes chromosome 22 clone:PTB-005B20, map 22, complete
             sequences
          Length = 123600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gctgaatgaaagcaagcaga 183
             ||||||||||||||||||||
Sbjct: 96030 gctgaatgaaagcaagcaga 96011



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>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence
          Length = 156833

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    gctgaatgaaagcaagcaga 183
              ||||||||||||||||||||
Sbjct: 126698 gctgaatgaaagcaagcaga 126717



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>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gctgaatgaaagcaagcaga 183
              ||||||||||||||||||||
Sbjct: 215069 gctgaatgaaagcaagcaga 215050



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>emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1598Q2, complete sequence
          Length = 116189

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gctgaatgaaagcaagcaga 183
             ||||||||||||||||||||
Sbjct: 26503 gctgaatgaaagcaagcaga 26484


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,578,328
Number of Sequences: 3902068
Number of extensions: 3578328
Number of successful extensions: 71910
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71411
Number of HSP's gapped (non-prelim): 498
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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