ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA 52 7e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
3dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
4dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
5dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
6dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
7dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
8dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
9dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
10gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 44 0.17
11gb|AY110165.1| Zea mays CL20454_1 mRNA sequence 44 0.17
12gb|AC167171.2| Mus musculus BAC clone RP23-409H8 from chromosome... 40 2.7
13ref|XM_323649.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.7
14ref|XM_955863.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.7
15emb|AL136124.10| Human DNA sequence from clone RP4-792D7 on chro... 40 2.7
16emb|BX294026.1|NCB7H23 Neurospora crassa DNA linkage group V BAC... 40 2.7
17gb|AC004944.1|AC004944 Homo sapiens PAC clone RP5-991O23 from 8,... 40 2.7
18dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 2.7
19gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 2.7
20gb|U15094.1|OVU15094 Onchocerca volvulus unknown protein mRNA, p... 40 2.7 
>ref|NM_189610.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1581

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 167  tcatgggagggcctccttcatgccgcgggcgaactcct 204
            |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcct 1293
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 167     tcatgggagggcctccttcatgccgcgggcgaactcct 204
               |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 4531603 tcatggcaggtcctccttcatgccgcggacgaactcct 4531566
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 167   tcatgggagggcctccttcatgccgcgggcgaactcct 204
             |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 66290 tcatggcaggtcctccttcatgccgcggacgaactcct 66253
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>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full
           insert sequence
          Length = 1033

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 167 tcatgggagggcctccttcatgccgcgggcgaactcct 204
           |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 52  tcatggcaggtcctccttcatgccgcggacgaactcct 89
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>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full
           insert sequence
          Length = 1097

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 167 tcatgggagggcctccttcatgccgcgggcgaactcct 204
           |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcct 804
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>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full
            insert sequence
          Length = 1581

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 167  tcatgggagggcctccttcatgccgcgggcgaactcct 204
            |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 1330 tcatggcaggtcctccttcatgccgcggacgaactcct 1293
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>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full
            insert sequence
          Length = 2131

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 167  tcatgggagggcctccttcatgccgcgggcgaactcct 204
            |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 1872 tcatggcaggtcctccttcatgccgcggacgaactcct 1835
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>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full
            insert sequence
          Length = 1593

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 167  tcatgggagggcctccttcatgccgcgggcgaactcct 204
            |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 1334 tcatggcaggtcctccttcatgccgcggacgaactcct 1297
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>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full
           insert sequence
          Length = 1097

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 167 tcatgggagggcctccttcatgccgcgggcgaactcct 204
           |||||| ||| ||||||||||||||||| |||||||||
Sbjct: 841 tcatggcaggtcctccttcatgccgcggacgaactcct 804
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 180    tccttcatgccgcgggcgaactcctgggag 209
              ||||||||||| ||||||||||||| ||||
Sbjct: 109551 tccttcatgccacgggcgaactcctcggag 109580
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>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence
          Length = 1000

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 180 tccttcatgccgcgggcgaactcctgggag 209
           ||||||||||| ||||||||||||| ||||
Sbjct: 726 tccttcatgccacgggcgaactcctcggag 697
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>gb|AC167171.2| Mus musculus BAC clone RP23-409H8 from chromosome 13, complete sequence
          Length = 203840

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      agaaggaaaaacaaagtaag 25
              ||||||||||||||||||||
Sbjct: 130395 agaaggaaaaacaaagtaag 130414
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>ref|XM_323649.1| Neurospora crassa OR74A hypothetical protein (NCU04310.1) partial
            mRNA
          Length = 3171

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 59   cagggacaaatacaacaacattagcagc 86
            ||||||||||| |||||||||| |||||
Sbjct: 2929 cagggacaaatgcaacaacatttgcagc 2956
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>ref|XM_955863.1| Neurospora crassa OR74A hypothetical protein (NCU04310.1) partial
            mRNA
          Length = 3171

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 59   cagggacaaatacaacaacattagcagc 86
            ||||||||||| |||||||||| |||||
Sbjct: 2929 cagggacaaatgcaacaacatttgcagc 2956
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>emb|AL136124.10| Human DNA sequence from clone RP4-792D7 on chromosome 1q42.2-43
             Contains the 5' end of the TARBP1 gene for TAR (HIV) RNA
             binding protein 1 and a CpG island, complete sequence
          Length = 104632

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    gaaaaacaaagtaagtacag 30
             ||||||||||||||||||||
Sbjct: 47549 gaaaaacaaagtaagtacag 47568
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>emb|BX294026.1|NCB7H23 Neurospora crassa DNA linkage group V BAC contig B7H23
          Length = 114377

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 59    cagggacaaatacaacaacattagcagc 86
             ||||||||||| |||||||||| |||||
Sbjct: 40808 cagggacaaatgcaacaacatttgcagc 40781
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>gb|AC004944.1|AC004944 Homo sapiens PAC clone RP5-991O23 from 8, complete sequence
          Length = 133258

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     agaaggaaaaacaaagtaag 25
             ||||||||||||||||||||
Sbjct: 45037 agaaggaaaaacaaagtaag 45018
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>dbj|AB008270.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG13
          Length = 50641

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    aacagggacaaatacaacaacatt 80
             |||| |||||||||||||||||||
Sbjct: 43383 aacaaggacaaatacaacaacatt 43360
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 83      cagcaacgatatcaaccaaacaac 106
               |||||||| |||||||||||||||
Sbjct: 2431910 cagcaacgttatcaaccaaacaac 2431933
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>gb|U15094.1|OVU15094 Onchocerca volvulus unknown protein mRNA, partial cds
          Length = 824

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   ggtccagaaggaaaaacaaagtaa 24
           |||| |||||||||||||||||||
Sbjct: 516 ggtcaagaaggaaaaacaaagtaa 539


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,026,182
Number of Sequences: 3902068
Number of extensions: 2026182
Number of successful extensions: 145210
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145110
Number of HSP's gapped (non-prelim): 100
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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