ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA21B_HORSE (P00594) Phospholipase A2 precursor (EC 3.1.1.4) (Ph... 31 2.0
2Y2082_MYCTU (Q10690) Hypothetical protein Rv2082 30 3.4
3INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase... 29 7.6
4MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle II... 29 7.6
5ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2 29 7.6
6GLYG_RABIT (P13280) Glycogenin-1 (EC 2.4.1.186) 28 9.9

>PA21B_HORSE (P00594) Phospholipase A2 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase) (Group IB
           phospholipase A2) [Contains: Phospholipase A2 isoform 2]
           (Fragment)
          Length = 132

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 252 SPCLESYRFASDSCVLPCSEN*NKCFACW*F*MCEVCLCVRGPVLCF 112
           +P  ESY+F+     + CS+  N C A        +C C R   +CF
Sbjct: 74  NPYTESYKFSCSGTEVTCSDKNNACEAF-------ICNCDRNAAICF 113



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>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082|
          Length = 721

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 297 TPASDPPDTLGPLGRISTCSCTAGAGADLGASLTPVRPQPATRSTRPKN 443
           TP + PP   GP+   +    +  AG  L + +      PAT   +P N
Sbjct: 437 TPPATPPTPTGPISGAAVTPSSPAAGGSLMSPVVNKSTAPATTQAQPSN 485



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>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 303 ASDPPDTLGPLGRISTCSCTAG-AGADLGASLTPVRPQPATRSTRPKNLSL 452
           A  PPD  G       CS  A  +G D  A   P+ P+P  R    + LSL
Sbjct: 36  AGSPPDAPGSESPALACSTPATPSGEDPPARAAPIAPRPPARPRLERALSL 86



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>MYH14_HUMAN (Q7Z406) Myosin-14 (Myosin heavy chain, nonmuscle IIc) (Nonmuscle|
           myosin heavy chain IIc) (NMHC II-C)
          Length = 1995

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 400 GVKEAPKSAPAPAVHEHVEIRPRGPNVSGGSEAGVN 293
           G K  P+  P P   +     PRGP+  GG  +G +
Sbjct: 10  GRKAPPRPGPVPEAAQPFLFTPRGPSAGGGPGSGTS 45



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>ZSWM2_MOUSE (Q9D9X6) Zinc finger SWIM domain-containing protein 2|
          Length = 631

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 246 CLESYRFASDSCVLPCSEN*N-KCFACW*F*MCEVCLCVRGPVLCFQVFKKILWSCLVTE 70
           CL+S+ F   + +LPC+   + KC   W    C  C     P+    ++  ++W  + T+
Sbjct: 347 CLKSFSFGQYTRLLPCTHKFHRKCIDNWLLHKCNSC-----PIDRQVIYNPLIWKGIATD 401



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>GLYG_RABIT (P13280) Glycogenin-1 (EC 2.4.1.186)|
          Length = 332

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 279 WYSLFTTSTSPCLESYRFASDSC 211
           W+ +FTTS  P L+ +    D+C
Sbjct: 248 WWDIFTTSVVPLLQQFGLVQDTC 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,610,030
Number of Sequences: 219361
Number of extensions: 1119477
Number of successful extensions: 3387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3386
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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