Clone Name | rbart48d02 |
---|---|
Clone Library Name | barley_pub |
>XTH26_ARATH (Q9SVV2) Putative xyloglucan endotransglucosylase/hydrolase protein| 26 precursor (EC 2.4.1.207) (At-XTH26) (XTH-26) Length = 292 Score = 45.4 bits (106), Expect = 8e-05 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = -2 Query: 402 TAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAREDGKGPVPPECDMEQY 256 T+P SQLT Q+ +++ ++ G+ IYDYC KG +PPEC +Q+ Sbjct: 245 TSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNR-FKGVMPPECSKKQF 292
>XTH25_ARATH (Q38907) Probable xyloglucan endotransglucosylase/hydrolase protein| 25 precursor (EC 2.4.1.207) (At-XTH25) (XTH-25) Length = 284 Score = 37.4 bits (85), Expect = 0.021 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAR 304 A Y N + C SG + C AG + + LT E ++R VQ Y IY+YC + Sbjct: 216 ASYRNFRADACVSSGGRSSCPAG-SPRWFSQRLDLTAED--KMRVVQRKYMIYNYCTDTK 272 Query: 303 EDGKGPVPPEC 271 +G P EC Sbjct: 273 RFPQG-FPKEC 282
>XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) Length = 293 Score = 36.2 bits (82), Expect = 0.047 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAA-GCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ CE S CA G PE L Q R+L V+ +TIY+YC Sbjct: 218 ASYRGFHVDGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTD- 276 Query: 306 REDGKGPVPPECDMEQ 259 D + PEC ++ Sbjct: 277 -HDRYAAMAPECKRDR 291
>XTH16_ARATH (Q8LG58) Probable xyloglucan endotransglucosylase/hydrolase protein| 16 precursor (EC 2.4.1.207) (At-XTH16) (XTH-16) Length = 291 Score = 35.8 bits (81), Expect = 0.061 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTAPEPSQLTKEQ----MRQLRAVQLGYTIYDYC 316 A Y C S + C +S SQ+ E R+LR VQ + IYDYC Sbjct: 213 AYYRGFNAAACTVSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYC 272 Query: 315 ASAREDGKGPVPPEC 271 + + +G PPEC Sbjct: 273 SDLKRFPQG-FPPEC 286
>XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase protein A| precursor (EC 2.4.1.207) (VaXTH1) Length = 292 Score = 35.4 bits (80), Expect = 0.080 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAEC-AAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ CE S C G PE L Q ++L V+ YTIY+YC Sbjct: 217 ASYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDR 276 Query: 306 REDGKGPVPPECDMEQ 259 + + VPPEC ++ Sbjct: 277 KRYSQ--VPPECTRDR 290
>XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydrolase| precursor (EC 2.4.1.207) (Fragment) Length = 295 Score = 35.0 bits (79), Expect = 0.10 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAEC-AAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ CE S C G PE L Q R+LR V+ YTIY+YC Sbjct: 219 AAYKGFHIDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDT 278 Query: 306 REDGKGPVPPECDMEQ 259 + PPEC ++ Sbjct: 279 KR-YPHISPPECKRDR 293
>XTH17_ARATH (O80803) Probable xyloglucan endotransglucosylase/hydrolase protein| 17 precursor (EC 2.4.1.207) (At-XTH17) (XTH-17) Length = 282 Score = 34.3 bits (77), Expect = 0.18 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAR 304 A Y N ++ C + + C+A T +L +++ VQ Y IY+YC R Sbjct: 216 AFYRNYNVDGCVWANGKSSCSANSPWFT----QKLDSNGQTRMKGVQSKYMIYNYCTDKR 271 Query: 303 EDGKGPVPPEC 271 +G VP EC Sbjct: 272 RFPRG-VPAEC 281
>XTH15_ARATH (Q38911) Probable xyloglucan endotransglucosylase/hydrolase protein| 15 precursor (EC 2.4.1.207) (At-XTH15) (XTH-15) Length = 289 Score = 34.3 bits (77), Expect = 0.18 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -2 Query: 465 GLNVCEC---SGADAECAAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAREDG 295 G N C SG D + + ++L R+LR VQ + IY+YC+ + Sbjct: 218 GFNAAACTASSGCDPKFKSSFGDGKLQVATELNAYGRRRLRWVQKYFMIYNYCSDLKRFP 277 Query: 294 KGPVPPEC 271 +G PPEC Sbjct: 278 RG-FPPEC 284
>XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hydrolase protein| B precursor (EC 2.4.1.207) (VaXTH2) Length = 293 Score = 34.3 bits (77), Expect = 0.18 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAA-GCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 AEY ++ CE S CA G E L Q R+L+ V+ +TIY+YC Sbjct: 218 AEYKGFHVDGCEASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDR 277 Query: 306 REDGKGPVPPEC 271 + +PPEC Sbjct: 278 TRYPQ--LPPEC 287
>XTH22_ARATH (Q38857) Xyloglucan endotransglucosylase/hydrolase protein 22| precursor (EC 2.4.1.207) (At-XTH22) (XTH-22) (Touch protein 4) Length = 284 Score = 32.7 bits (73), Expect = 0.52 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTAPEP---SQLTKEQMRQLRAVQLGYTIYDYCA 313 A Y C S + C T +L +++R VQ Y IY+YC Sbjct: 209 ASYRGFQQEACVWSNGKSSCPNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCT 268 Query: 312 SAREDGKGPVPPEC 271 A+ +G +P EC Sbjct: 269 DAKRFPQG-LPKEC 281
>XTH12_ARATH (Q9FKL9) Probable xyloglucan endotransglucosylase/hydrolase protein| 12 precursor (EC 2.4.1.207) (At-XTH12) (XTH-12) Length = 285 Score = 32.7 bits (73), Expect = 0.52 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Frame = -2 Query: 414 CNA-STAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAREDGKGPVPPECDM 265 CNA S + + L Q+ QL+ VQ Y IY+YC + +G +P EC++ Sbjct: 235 CNANSNSWMWTTLNSNQLGQLKWVQKDYMIYNYCTDFKRFPQG-LPTECNL 284
>XTH20_ARATH (Q9FI31) Probable xyloglucan endotransglucosylase/hydrolase protein| 20 precursor (EC 2.4.1.207) (At-XTH20) (XTH-20) Length = 282 Score = 32.3 bits (72), Expect = 0.67 Identities = 19/71 (26%), Positives = 32/71 (45%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAR 304 A Y N ++ C S + C+A + T L + +++ Q Y +Y+YC + Sbjct: 216 AFYRNYNVDACVWSNGKSSCSANSSWFT----QVLDFKGKNRVKWAQRKYMVYNYCTDKK 271 Query: 303 EDGKGPVPPEC 271 +G PPEC Sbjct: 272 RFPQG-APPEC 281
>XTH23_ARATH (Q38910) Probable xyloglucan endotransglucosylase/hydrolase protein| 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) Length = 286 Score = 32.3 bits (72), Expect = 0.67 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAEC--AAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCAS 310 A Y C + C +G ++ + +L Q+R VQ Y IY+YC Sbjct: 212 ASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTD 271 Query: 309 AREDGKGPVPPEC 271 A+ +G +P EC Sbjct: 272 AKRFPQG-LPREC 283
>XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase protein 4| precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) Length = 296 Score = 32.0 bits (71), Expect = 0.88 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAA-GCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ C+ S CA G E L EQ R+L+ V++ +TIY+YC Sbjct: 221 ASYKGFHIDGCQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCT-- 278 Query: 306 REDGKGPV-PPECDMEQ 259 + + PV P EC ++ Sbjct: 279 -DRTRFPVMPAECKRDR 294
>XTH7_ARATH (Q8LER3) Probable xyloglucan endotransglucosylase/hydrolase protein| 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) Length = 293 Score = 32.0 bits (71), Expect = 0.88 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGC-NASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y + + C G A+C A N QL+ + R R V++ + +YDYC Sbjct: 221 AYYKDFDIEGCPVPGP-ADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCT-- 277 Query: 306 REDGKGPV-PPEC 271 + + PV PPEC Sbjct: 278 -DKSRFPVPPPEC 289
>XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydrolase protein| precursor (EC 2.4.1.207) Length = 295 Score = 31.6 bits (70), Expect = 1.2 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 369 QMRQLRAVQLGYTIYDYCASAREDGKGPVPPECDMEQ 259 Q R+LR V+ YTIY+YC + +PPEC ++ Sbjct: 259 QYRRLRWVRQKYTIYNYCTDRKR--YPTLPPECTKDR 293
>XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hydrolase 1| precursor (EC 2.4.1.207) (LeXTH1) Length = 296 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -2 Query: 369 QMRQLRAVQLGYTIYDYCASAREDGKGPV-PPECDMEQ 259 Q R+LR V+ YT+Y+YC + + PV PPEC ++ Sbjct: 260 QYRRLRWVRQKYTVYNYCT---DKARYPVPPPECTKDR 294
>XTH10_ARATH (Q9ZVK1) Probable xyloglucan endotransglucosylase/hydrolase protein| 10 precursor (EC 2.4.1.207) (At-XTH10) (XTH-10) Length = 299 Score = 31.2 bits (69), Expect = 1.5 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Frame = -2 Query: 459 NVCECSGADAECAAGCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCAS-AREDGKGPV 283 N C+G E N E S LT+ Q R + V+ + IYDYC R + K + Sbjct: 238 NTSFCNGESTE-----NWWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNK--L 290 Query: 282 PPECDMEQY 256 P EC + +Y Sbjct: 291 PKECSLPKY 299
>XTH31_ARATH (P93046) Probable xyloglucan endotransglucosylase/hydrolase protein| 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) Length = 293 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNA-STAPEPSQ-LTKEQMRQLRAVQLGYTIYDYCAS 310 A+Y N L +G A+ ++ C S AP ++ L+++QM L Q + +Y+YC Sbjct: 228 AKYKNFKL-----AGCTADSSSSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVYNYCHD 282 Query: 309 AREDGKGPVPPEC 271 + D PEC Sbjct: 283 PKRD--HTQTPEC 293
>XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase precursor (EC| 2.4.1.207) (BobXET16A) Length = 295 Score = 30.8 bits (68), Expect = 2.0 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAA-GCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ C+ S CA G E L EQ R+L+ V++ +TIY+YC Sbjct: 220 ASYRGFHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCT-- 277 Query: 306 REDGKGPV-PPEC 271 + + PV P EC Sbjct: 278 -DRTRFPVMPAEC 289
>BRU1_SOYBN (P35694) Brassinosteroid-regulated protein BRU1 precursor| Length = 283 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 411 NASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAREDGKGPVPPEC 271 N+ E ++L R+LR VQ + IY+YC+ + +G +P EC Sbjct: 236 NSGAEYEANELDAYSRRRLRWVQKYFMIYNYCSDLKRFPQG-LPAEC 281
>XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hydrolase protein| 5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5) Length = 293 Score = 30.4 bits (67), Expect = 2.6 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAA-GCNASTAPEPSQLTKEQMRQLRAVQLGYTIYDYCASA 307 A Y ++ CE S C G E L Q ++L+ V+ YTIY+YC Sbjct: 218 ASYRGFHVDGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCT-- 275 Query: 306 REDGKGPV-PPEC 271 + + PV PPEC Sbjct: 276 -DRVRFPVPPPEC 287
>PMS1_HUMAN (P54277) PMS1 protein homolog 1 (DNA mismatch repair protein PMS1)| Length = 932 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +1 Query: 7 SQQEKLYIREKATSSLDHHTSSIRPEENARSNLARNNQRKRI 132 S++EKL EKAT L+ + S ++ S ++ + RK+I Sbjct: 613 SEEEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDGRKKI 654
>XTH13_ARATH (Q9FKL8) Putative xyloglucan endotransglucosylase/hydrolase protein| 13 precursor (EC 2.4.1.207) (At-XTH13) (XTH-13) Length = 284 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 414 CNA-STAPEPSQLTKEQMRQLRAVQLGYTIYDYCASAREDGKGPVPPECDM 265 CNA S + + L Q Q++ VQ Y IY+YC + +G +P EC++ Sbjct: 234 CNANSNSWMWTTLNSNQYGQMKWVQDDYMIYNYCTDFKRFPQG-LPTECNL 283
>XTH2_ARATH (Q9SV60) Putative xyloglucan endotransglucosylase/hydrolase protein| 2 precursor (EC 2.4.1.207) (At-XTH2) (XTH-2) Length = 292 Score = 29.3 bits (64), Expect = 5.7 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -2 Query: 387 SQLTKEQMRQLRAVQLGYTIYDYCASAREDGKGPVPP-ECDMEQ 259 SQL+ + + + V+ Y YDYC+ + + PVPP EC Q Sbjct: 252 SQLSANEQKVMENVRAKYMTYDYCS---DRPRYPVPPSECRWNQ 292
>XTH9_ARATH (Q8LDW9) Xyloglucan endotransglucosylase/hydrolase protein 9| precursor (EC 2.4.1.207) (At-XTH9) (XTH-9) Length = 290 Score = 29.3 bits (64), Expect = 5.7 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Frame = -2 Query: 483 AEYSNMGLNVCECSGADAECAAGCNASTA-----PEPSQLTKEQMRQLRAVQLGYTIYDY 319 A Y ++ CE + CN P S+L+ Q QL V+ + IYDY Sbjct: 213 ASYKEFQIDACEIPTTTD--LSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDY 270 Query: 318 CASAREDGKGPVPP-ECDMEQY 256 C A + PV P EC ++ Sbjct: 271 CFDAT---RFPVTPLECQHHRH 289
>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting| protein) Length = 510 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 6/45 (13%) Frame = -1 Query: 229 YDDP*STRCAHAFLPFCFLGCWR------GVTSDLLICLFFCVDC 113 + +P S C H+F C + CW G + L C C C Sbjct: 36 FREPVSVECGHSFCRACIMRCWERPGAGTGTATRTLPCPLPCPQC 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,051,651 Number of Sequences: 219361 Number of extensions: 1081830 Number of successful extensions: 2922 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2863 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2917 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)