>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 313      ggcgcagtagtcgtagatggtgtagccgagctgcac 348
                ||||||||||||||||||||||||||| ||||||||
Sbjct: 13233011 ggcgcagtagtcgtagatggtgtagcccagctgcac 13232976

>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                  
Query: 313    ggcgcagtagtcgtagatggtgtagccgagctgcac 348
              ||||||||||||||||||||||||||| ||||||||
Sbjct: 150199 ggcgcagtagtcgtagatggtgtagcccagctgcac 150164

>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full
            insert sequence
          Length = 1439

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 313  ggcgcagtagtcgtagatggtgtagccgagctgcac 348
            ||||||||||||||||||||||||||| ||||||||
Sbjct: 1227 ggcgcagtagtcgtagatggtgtagcccagctgcac 1192

>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence
          Length = 211178

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 119    aacgcaaaagaataaacatat 139
              |||||||||||||||||||||
Sbjct: 190439 aacgcaaaagaataaacatat 190459

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 375     tggtgagctgggacggctccg 395
               |||||||||||||||||||||
Sbjct: 2138913 tggtgagctgggacggctccg 2138893

>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 128    gaataaacatatcaggagatccgag 152
              |||||| ||||||||||||||||||
Sbjct: 146444 gaataagcatatcaggagatccgag 146420

>gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, complete cds,
             alternatively spliced
          Length = 63527

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   gcagtagtcgtagatggtgt 335
             ||||||||||||||||||||
Sbjct: 19750 gcagtagtcgtagatggtgt 19769

>gb|AE009040.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 66 of
            256 of the complete sequence
          Length = 12152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 420  cggcgcactcggcgtcggcg 439
            ||||||||||||||||||||
Sbjct: 2679 cggcgcactcggcgtcggcg 2698

>gb|AC101652.8| Mus musculus chromosome 1, clone RP23-58D20, complete sequence
          Length = 168183

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 166   aacatccaaggaaacaaaatggga 189
             ||||||||||||||||||| ||||
Sbjct: 31730 aacatccaaggaaacaaaaaggga 31707

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    gcactcgggcggcacggggc 290
              ||||||||||||||||||||
Sbjct: 280425 gcactcgggcggcacggggc 280444

>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaaatgggaggaatgcatgc 200
             ||||||||||||||||||||
Sbjct: 33804 aaaatgggaggaatgcatgc 33823

>emb|AL713859.9| Human DNA sequence from clone RP11-242B9 on chromosome 1 Contains
            part of a novel gene (FLJ10986), complete sequence
          Length = 105393

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  caaaatgggaggaatgcatg 199
            ||||||||||||||||||||
Sbjct: 7902 caaaatgggaggaatgcatg 7883

>gb|AC008534.7| Homo sapiens chromosome 5 clone CTC-484P3, complete sequence
          Length = 253402

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aacatccaaggaaacaaaat 185
              ||||||||||||||||||||
Sbjct: 165286 aacatccaaggaaacaaaat 165267

>emb|Y07826.2|TTDNAKOPN T.thermophilus DnaK operon
          Length = 6480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 358  ctggcgcatctgctccttggtgag 381
            |||||| |||||||||||||||||
Sbjct: 6174 ctggcggatctgctccttggtgag 6151

>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 115     aatcaacgcaaaagaataaacata 138
               |||| |||||||||||||||||||
Sbjct: 1212406 aatcgacgcaaaagaataaacata 1212383

>emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in linkage group 17,
              complete sequence
          Length = 197949

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    caatcaacgcaaaagaataa 133
              ||||||||||||||||||||
Sbjct: 132665 caatcaacgcaaaagaataa 132646

>emb|AL663099.7| Mouse DNA sequence from clone DN-384L23 on chromosome 3 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD)
             pseudogene, two novel genes (4930406D18RIK)
             (4930431B09Rik), the 5' end of a novel gene
             (E130019M14RIK) and a CpG island, complete sequence
          Length = 177135

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   aaaatgggaggaatgcatgc 200
             ||||||||||||||||||||
Sbjct: 29583 aaaatgggaggaatgcatgc 29564

>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17,
              complete sequence
          Length = 162970

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    aataaacatatcaggagatccgag 152
              ||||| ||||||||||||||||||
Sbjct: 141774 aataagcatatcaggagatccgag 141797

>emb|BX537142.10| Zebrafish DNA sequence from clone CH211-271D10 in linkage group 16,
              complete sequence
          Length = 176055

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 129    aataaacatatcaggagatccgag 152
              ||||| ||||||||||||||||||
Sbjct: 121477 aataagcatatcaggagatccgag 121500

>emb|BX470262.7| Zebrafish DNA sequence from clone CH211-120K20 in linkage group 14,
             complete sequence
          Length = 164673

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   aataaacatatcaggagatccgag 152
             ||||| ||||||||||||||||||
Sbjct: 11772 aataagcatatcaggagatccgag 11749

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    cggcgcactcggcgtcggcg 439
              ||||||||||||||||||||
Sbjct: 716281 cggcgcactcggcgtcggcg 716300

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 392     tccggcgcggtggacgcgttgcagccgg 419
               |||| ||||| |||||||||||||||||
Sbjct: 2795397 tccgccgcgggggacgcgttgcagccgg 2795370

>emb|BX511230.4| Zebrafish DNA sequence from clone DKEY-14H23 in linkage group 17,
             complete sequence
          Length = 156048

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   aataaacatatcaggagatccgag 152
             ||||| ||||||||||||||||||
Sbjct: 29557 aataagcatatcaggagatccgag 29580

>gb|AC007817.7|AC007817 Drosophila melanogaster, chromosome 3R, region 98A-98B, BAC clone
              BACR15D01, complete sequence
          Length = 180499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    acaaaatgggaggaatgcat 198
              ||||||||||||||||||||
Sbjct: 128217 acaaaatgggaggaatgcat 128198

>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence
          Length = 233877

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    gtccttgattttatcatcag 256
              ||||||||||||||||||||
Sbjct: 167626 gtccttgattttatcatcag 167607

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 358     ctggcgcatctgctccttggtgag 381
               |||||| |||||||||||||||||
Sbjct: 1413142 ctggcggatctgctccttggtgag 1413165

>emb|CR548625.11| Zebrafish DNA sequence from clone CH211-139E14 in linkage group 19,
             complete sequence
          Length = 195124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   aataaacatatcaggagatccgag 152
             ||||||||||||||| ||||||||
Sbjct: 99783 aataaacatatcaggtgatccgag 99760

>emb|BX649576.15| Zebrafish DNA sequence from clone CH211-153M5 in linkage group 18,
             complete sequence
          Length = 108124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   aataaacatatcaggagatccgag 152
             ||||||||||| ||||||||||||
Sbjct: 89771 aataaacatataaggagatccgag 89794

>gb|AE003761.2| Drosophila melanogaster chromosome 3R, section 99 of 118 of the complete
              sequence
          Length = 224910

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    acaaaatgggaggaatgcat 198
              ||||||||||||||||||||
Sbjct: 177403 acaaaatgggaggaatgcat 177384

>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   aataaacatatcaggagatccgag 152
             ||||| ||||||||||||||||||
Sbjct: 19102 aataagcatatcaggagatccgag 19079

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 358     ctggcgcatctgctccttggtgag 381
               |||||| |||||||||||||||||
Sbjct: 1090137 ctggcggatctgctccttggtgag 1090160

>gb|AC132082.3| Mus musculus BAC clone RP24-511K23 from 1, complete sequence
          Length = 165033

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 166    aacatccaaggaaacaaaatggga 189
              ||||||||||||||||||| ||||
Sbjct: 155306 aacatccaaggaaacaaaaaggga 155329

>gb|U36795.1|MXU36795 Myxococcus xanthus rfbABC O-antigen biosynthesis operon, rfbA, rfbB,
            and rfbC genes, complete cds
          Length = 7165

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  ttccctggcggaggcgcagt 320
            ||||||||||||||||||||
Sbjct: 2405 ttccctggcggaggcgcagt 2424

>emb|AL606750.13| Mouse DNA sequence from clone RP23-335A19 on chromosome 3, complete
             sequence
          Length = 207366

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   aaaatgggaggaatgcatgc 200
             ||||||||||||||||||||
Sbjct: 87223 aaaatgggaggaatgcatgc 87204

>gb|AC166354.3| Mus musculus BAC clone RP24-283P23 from chromosome 1, complete sequence
          Length = 158355

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 166   aacatccaaggaaacaaaatggga 189
             ||||||||||||||||||| ||||
Sbjct: 74154 aacatccaaggaaacaaaaaggga 74177

>dbj|AB003499.1| Pneumocystis carinii mRNA for subtilisin-like protease 3, partial cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  tggcggaggcgcagtagtcg 325
            ||||||||||||||||||||
Sbjct: 1417 tggcggaggcgcagtagtcg 1398

>dbj|AB012390.1| Thermus thermophilus genes for DnaK, GrpE, DnaJ, DafA, ClpB, complete
            cds
          Length = 6480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 358  ctggcgcatctgctccttggtgag 381
            |||||| |||||||||||||||||
Sbjct: 6174 ctggcggatctgctccttggtgag 6151

>dbj|AB032368.1| Thermus thermophilus clpB, dafA, dnaJ, grpE, dnaK, ftsH genes,
           complete cds
          Length = 9000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 358 ctggcgcatctgctccttggtgag 381
           |||||| |||||||||||||||||
Sbjct: 307 ctggcggatctgctccttggtgag 330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,839,837
Number of Sequences: 3902068
Number of extensions: 3839837
Number of successful extensions: 72405
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72089
Number of HSP's gapped (non-prelim): 316
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)