ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
2dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AK106488.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 48 0.028
7ref|XM_234518.3| PREDICTED: Rattus norvegicus serine (or cystein... 46 0.11
8emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 44 0.44
9gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.7
10ref|XM_571155.1| Cryptococcus neoformans var. neoformans JEC21 p... 42 1.7
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.7
12ref|XM_511022.1| PREDICTED: Pan troglodytes similar to TNFRSF1A-... 40 6.9
13ref|XM_474336.1| Oryza sativa (japonica cultivar-group), predic... 40 6.9
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.9
15ref|XM_368047.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 6.9
16ref|XM_580868.2| PREDICTED: Bos taurus similar to TNFRSF1A-assoc... 40 6.9
17gb|BC004491.2| Homo sapiens TNFRSF1A-associated via death domain... 40 6.9
18gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain... 40 6.9
19ref|XM_755900.1| Ustilago maydis 521 hypothetical protein (UM048... 40 6.9
20ref|XM_808915.1| Trypanosoma cruzi strain CL Brener basal body c... 40 6.9
21ref|XM_537345.2| PREDICTED: Canis familiaris similar to Myosin-5... 40 6.9
22gb|BC112743.1| Bos taurus similar to TNFRSF1A-associated via dea... 40 6.9
23emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.9
24emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 40 6.9
25emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 6.9
26emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 6.9
27gb|BT007794.1| Synthetic construct Homo sapiens TNFRSF1A-associa... 40 6.9
28gb|BT006934.1| Homo sapiens TNFRSF1A-associated via death domain... 40 6.9
29emb|AL645745.7| Mouse DNA sequence from clone RP23-213G18 on chr... 40 6.9
30dbj|AK090673.1| Homo sapiens cDNA FLJ33354 fis, clone BRACE20051... 40 6.9
31gb|AE012443.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.9
32gb|AC007318.4| Homo sapiens BAC clone RP11-420C9 from 2, complet... 40 6.9
33ref|NM_153425.1| Homo sapiens TNFRSF1A-associated via death doma... 40 6.9
34ref|NM_003789.2| Homo sapiens TNFRSF1A-associated via death doma... 40 6.9
35gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome... 40 6.9
36gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.9
37gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.9
38gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.9
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
41gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H... 40 6.9
42gb|AY227810.1| Emericella nidulans snfA gene, partial sequence 40 6.9
43gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, compl... 40 6.9
44gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-ass... 40 6.9
45dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.9
46dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
47gb|AY892172.1| Synthetic construct Homo sapiens clone FLH014254.... 40 6.9
48gb|AY889716.1| Synthetic construct Homo sapiens clone FLH014258.... 40 6.9
49gb|AE005129.1| Halobacterium sp. NRC-1 section 160 of 170 of the... 40 6.9
50gb|AY112603.1| Zea mays CL43526_1 mRNA sequence 40 6.9
51emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.9
52emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.9
53emb|AJ311616.1|HSA311616 Homo sapiens partial TRADD gene for TNF... 40 6.9
54emb|AL845534.7| Mouse DNA sequence from clone RP23-223C17 on chr... 40 6.9
55gb|L41690.1|HUMTRADD Homo sapiens TNF receptor-1 associated prot... 40 6.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  200 bits (101), Expect = 3e-48
 Identities = 143/157 (91%)
 Strand = Plus / Plus

                                                                            
Query: 347      cgaccaggcgctgcagcgtgtcgcggtcgccgacgatggtgaggaggaacgccagcatct 406
                |||| ||||| |||||| ||||||||||||||||||   |||||||||| || |||||||
Sbjct: 20649207 cgacgaggcggtgcagcttgtcgcggtcgccgacgaccttgaggaggaaggcgagcatct 20649266

                                                                            
Query: 407      gcttgggcttccgctccgtctcctgcacgcggcgccacatggcggccaccctgtcgtcga 466
                |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 20649267 gcttgggcctccgctccgtctcctgcacgcggcgccacatcgcggccaccctgtcgtcga 20649326

                                                     
Query: 467      tggtgctctgctccttcttcagcctcaccacctccgt 503
                |||||| |||||||| ||||||||  |||||||||||
Sbjct: 20649327 tggtgcgctgctcctgcttcagccggaccacctccgt 20649363



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 210      gtagaaccccgcgaagtcgacggcgtccggcccaaacgcg 249
                ||||||||| |||||||||||||||||||| || ||||||
Sbjct: 20649043 gtagaacccggcgaagtcgacggcgtccgggccgaacgcg 20649082



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 264      gtcgccgtcaagcagcagcctcgccctcttctcgccgc 301
                ||||||||| |||||||||||||| | |||||||||||
Sbjct: 20649091 gtcgccgtcgagcagcagcctcgcgcgcttctcgccgc 20649128



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 98       atcagtacccactgtccactccaaaggcaaacgagcagccggc 140
                ||||||| || ||||||||||| || || ||||||||||||||
Sbjct: 20648937 atcagtagccgctgtccactccgaaagcgaacgagcagccggc 20648979
to top
>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427B07
          Length = 172058

 Score =  200 bits (101), Expect = 3e-48
 Identities = 143/157 (91%)
 Strand = Plus / Plus

                                                                         
Query: 347   cgaccaggcgctgcagcgtgtcgcggtcgccgacgatggtgaggaggaacgccagcatct 406
             |||| ||||| |||||| ||||||||||||||||||   |||||||||| || |||||||
Sbjct: 71614 cgacgaggcggtgcagcttgtcgcggtcgccgacgaccttgaggaggaaggcgagcatct 71673

                                                                         
Query: 407   gcttgggcttccgctccgtctcctgcacgcggcgccacatggcggccaccctgtcgtcga 466
             |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 71674 gcttgggcctccgctccgtctcctgcacgcggcgccacatcgcggccaccctgtcgtcga 71733

                                                  
Query: 467   tggtgctctgctccttcttcagcctcaccacctccgt 503
             |||||| |||||||| ||||||||  |||||||||||
Sbjct: 71734 tggtgcgctgctcctgcttcagccggaccacctccgt 71770



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 210   gtagaaccccgcgaagtcgacggcgtccggcccaaacgcg 249
             ||||||||| |||||||||||||||||||| || ||||||
Sbjct: 71450 gtagaacccggcgaagtcgacggcgtccgggccgaacgcg 71489



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 264   gtcgccgtcaagcagcagcctcgccctcttctcgccgc 301
             ||||||||| |||||||||||||| | |||||||||||
Sbjct: 71498 gtcgccgtcgagcagcagcctcgcgcgcttctcgccgc 71535



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 98    atcagtacccactgtccactccaaaggcaaacgagcagccggc 140
             ||||||| || ||||||||||| || || ||||||||||||||
Sbjct: 71344 atcagtagccgctgtccactccgaaagcgaacgagcagccggc 71386
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 371     ggtcgccgacgatggtgaggaggaacgccagcatctgcttgggcttccgctccgtctcct 430
               ||||||||||||   ||| |||||| || ||||||||||||||    |||||||||||||
Sbjct: 7463834 ggtcgccgacgaccttgacgaggaaggcgagcatctgcttggggcggcgctccgtctcct 7463775

                                     
Query: 431     gcacgcggcgccacatggcggc 452
               |||||||||||||||| |||||
Sbjct: 7463774 gcacgcggcgccacatcgcggc 7463753
to top
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                         
Query: 371   ggtcgccgacgatggtgaggaggaacgccagcatctgcttgggcttccgctccgtctcct 430
             ||||||||||||   ||| |||||| || ||||||||||||||    |||||||||||||
Sbjct: 57540 ggtcgccgacgaccttgacgaggaaggcgagcatctgcttggggcggcgctccgtctcct 57481

                                   
Query: 431   gcacgcggcgccacatggcggc 452
             |||||||||||||||| |||||
Sbjct: 57480 gcacgcggcgccacatcgcggc 57459
to top
>dbj|AK106488.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A02, full
           insert sequence
          Length = 1392

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 371 ggtcgccgacgatggtgaggaggaacgccagcatctgcttgggcttccgctccgtctcct 430
           ||||||||||||   ||| |||||| || ||||||||||||||    |||||||||||||
Sbjct: 621 ggtcgccgacgaccttgacgaggaaggcgagcatctgcttggggcggcgctccgtctcct 562

                                 
Query: 431 gcacgcggcgccacatggcggc 452
           |||||||||||||||| |||||
Sbjct: 561 gcacgcggcgccacatcgcggc 540
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 146     cgccgcccgacccggcggccgcctccaccggc 177
               |||||||||  |||||||||||||||||||||
Sbjct: 1258846 cgccgcccgcgccggcggccgcctccaccggc 1258815



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 351     caggcgctgcagcgtgtcgcggtcgccgacgat 383
               ||||||| |||||| ||||||||||||| ||||
Sbjct: 2073224 caggcgcagcagcgcgtcgcggtcgccgtcgat 2073192
to top
>ref|XM_234518.3| PREDICTED: Rattus norvegicus serine (or cysteine) proteinase
           inhibitor, clade A (alpha-1 antiproteinase,
           antitrypsin), member 9 (predicted) (Serpina9_predicted),
           mRNA
          Length = 1365

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 109 ctgtccactccaaaggcaaacga 131
           |||||||||||||||||||||||
Sbjct: 869 ctgtccactccaaaggcaaacga 847
to top
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 147    gccgcccgacccggcggccgcc 168
              ||||||||||||||||||||||
Sbjct: 168547 gccgcccgacccggcggccgcc 168568
to top
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
               sequence
          Length = 1507550

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 303     ctccaccggctcctggtcgcc 323
               |||||||||||||||||||||
Sbjct: 1290600 ctccaccggctcctggtcgcc 1290580
to top
>ref|XM_571155.1| Cryptococcus neoformans var. neoformans JEC21 protein complex
           assembly-related protein (CNE04610) partial mRNA
          Length = 930

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 303 ctccaccggctcctggtcgcc 323
           |||||||||||||||||||||
Sbjct: 651 ctccaccggctcctggtcgcc 671
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    ggcggccgcctccaccggcac 179
              |||||||||||||||||||||
Sbjct: 492086 ggcggccgcctccaccggcac 492106
to top
>ref|XM_511022.1| PREDICTED: Pan troglodytes similar to TNFRSF1A-associated via death
           domain isoform 1; tumor necrosis factor
           receptor-1-associated protein; TNFR1-associated death
           domain protein; tumor necrosis factor receptor type 1
           associated death domain protein (LOC454154), mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 563 accaggcgctgcagcgtggcgcgg 540
to top
>ref|XM_474336.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 145 ccgccgcccgacccggcggccgcc 168
           ||||||||| ||||||||||||||
Sbjct: 146 ccgccgccccacccggcggccgcc 169
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    cgtgtcgcggtcgccgacga 382
              ||||||||||||||||||||
Sbjct: 794796 cgtgtcgcggtcgccgacga 794815
to top
>ref|XM_368047.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07951.4) partial mRNA
          Length = 528

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 gcctccaccggcaccggcac 185
           ||||||||||||||||||||
Sbjct: 36  gcctccaccggcaccggcac 17
to top
>ref|XM_580868.2| PREDICTED: Bos taurus similar to TNFRSF1A-associated via death
           domain isoform 1 (LOC504707), mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 913 accaggcgctgcagcgtggcgcgg 890
to top
>gb|BC004491.2| Homo sapiens TNFRSF1A-associated via death domain, transcript
           variant 1, mRNA (cDNA clone MGC:11078 IMAGE:3689007),
           complete cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 914 accaggcgctgcagcgtggcgcgg 891
to top
>gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain (TRADD) gene,
            complete cds
          Length = 9002

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 349  accaggcgctgcagcgtgtcgcgg 372
            |||||||||||||||||| |||||
Sbjct: 7139 accaggcgctgcagcgtggcgcgg 7116
to top
>ref|XM_755900.1| Ustilago maydis 521 hypothetical protein (UM04846.1) partial mRNA
          Length = 3381

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 180  cggcacattggcgaatgcgt 199
            ||||||||||||||||||||
Sbjct: 2589 cggcacattggcgaatgcgt 2570
to top
>ref|XM_808915.1| Trypanosoma cruzi strain CL Brener basal body component
            (Tc00.1047053511071.130) partial mRNA
          Length = 4269

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  gcttccgctccgtctcctgc 432
            ||||||||||||||||||||
Sbjct: 1093 gcttccgctccgtctcctgc 1074
to top
>ref|XM_537345.2| PREDICTED: Canis familiaris similar to Myosin-5B (Myosin Vb)
            (LOC480220), mRNA
          Length = 5753

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 476  gctccttcttcagcctcaccacctccgtggcg 507
            |||||||||| ||| || ||||||||||||||
Sbjct: 2968 gctccttctttagcttctccacctccgtggcg 2937
to top
>gb|BC112743.1| Bos taurus similar to TNFRSF1A-associated via death domain isoform
           1, mRNA (cDNA clone MGC:137615 IMAGE:8167967), complete
           cds
          Length = 1547

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 938 accaggcgctgcagcgtggcgcgg 915
to top
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   cctccaccggctcctggtcgccgc 325
             ||||||||||| ||||||||||||
Sbjct: 21158 cctccaccggcgcctggtcgccgc 21181
to top
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   cctccaccggctcctggtcgccgc 325
             ||||||||||| ||||||||||||
Sbjct: 94536 cctccaccggcgcctggtcgccgc 94559
to top
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 302    cctccaccggctcctggtcgccgc 325
              ||||||||||| ||||||||||||
Sbjct: 275575 cctccaccggcgcctggtcgccgc 275552
to top
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
            complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 145  ccgccgcccgacccggcggccgcc 168
            ||||||||| ||||||||||||||
Sbjct: 3041 ccgccgccccacccggcggccgcc 3064
to top
>gb|BT007794.1| Synthetic construct Homo sapiens TNFRSF1A-associated via death
           domain mRNA, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
to top
>gb|BT006934.1| Homo sapiens TNFRSF1A-associated via death domain mRNA, complete
           cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
to top
>emb|AL645745.7| Mouse DNA sequence from clone RP23-213G18 on chromosome 13 contains an
             H+ transporting mitochondrial F0 complex ATP synthase f2
             (Atp5j2) pseudogene, the Irf4 gene for interferon
             regulatory factor 4 and the 3' end of the gene for
             2410030I24RIK protein (ortholog of human SEC5), complete
             sequence
          Length = 137942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   cagcatctgcttgggcttcc 418
             ||||||||||||||||||||
Sbjct: 61802 cagcatctgcttgggcttcc 61783
to top
>dbj|AK090673.1| Homo sapiens cDNA FLJ33354 fis, clone BRACE2005124, highly similar to
            TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH
            DOMAIN PROTEIN
          Length = 1833

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 349  accaggcgctgcagcgtgtcgcgg 372
            |||||||||||||||||| |||||
Sbjct: 1301 accaggcgctgcagcgtggcgcgg 1278
to top
>gb|AE012443.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 351
           of 460 of the complete genome
          Length = 10520

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 cgaccaggcgctgcagcgtg 366
           ||||||||||||||||||||
Sbjct: 192 cgaccaggcgctgcagcgtg 211
to top
>gb|AC007318.4| Homo sapiens BAC clone RP11-420C9 from 2, complete sequence
          Length = 204230

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agcggtcaaaatggcagtca 20
              ||||||||||||||||||||
Sbjct: 110913 agcggtcaaaatggcagtca 110932
to top
>ref|NM_153425.1| Homo sapiens TNFRSF1A-associated via death domain (TRADD), transcript
            variant 2, mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 349  accaggcgctgcagcgtgtcgcgg 372
            |||||||||||||||||| |||||
Sbjct: 1407 accaggcgctgcagcgtggcgcgg 1384
to top
>ref|NM_003789.2| Homo sapiens TNFRSF1A-associated via death domain (TRADD),
           transcript variant 1, mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 930 accaggcgctgcagcgtggcgcgg 907
to top
>gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome 9, complete sequence
          Length = 175422

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    ctgtccactccaaaggcaaa 128
              ||||||||||||||||||||
Sbjct: 104018 ctgtccactccaaaggcaaa 104037
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 347     cgaccaggcgctgcagcgtg 366
               ||||||||||||||||||||
Sbjct: 1159519 cgaccaggcgctgcagcgtg 1159538
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 189    ggcgaatgcgtcgccgtcggcgtagaac 216
              |||||| |||||||||||||||| ||||
Sbjct: 637971 ggcgaacgcgtcgccgtcggcgtcgaac 637944
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 357    ctgcagcgtgtcgcggtcgccgac 380
              |||||||||| |||||||||||||
Sbjct: 582359 ctgcagcgtgccgcggtcgccgac 582382
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 145      ccgccgcccgacccggcggccgcc 168
                ||||||||| ||||||||||||||
Sbjct: 34548919 ccgccgccccacccggcggccgcc 34548942
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 158      cggcggccgcctccaccggcaccg 181
                ||||||||||||| ||||||||||
Sbjct: 14193580 cggcggccgcctctaccggcaccg 14193603
to top
>gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H1, complete sequence
          Length = 209574

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 349    accaggcgctgcagcgtgtcgcgg 372
              |||||||||||||||||| |||||
Sbjct: 184081 accaggcgctgcagcgtggcgcgg 184058
to top
>gb|AY227810.1| Emericella nidulans snfA gene, partial sequence
          Length = 5227

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 163 gccgcctccaccggcaccggcaca 186
           ||||||||||||||||||| ||||
Sbjct: 859 gccgcctccaccggcaccgtcaca 836
to top
>gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, complete sequence
          Length = 152952

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    accaggcgctgcagcgtgtcgcgg 372
              |||||||||||||||||| |||||
Sbjct: 123367 accaggcgctgcagcgtggcgcgg 123390
to top
>gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-associated death domain
            protein (TRADD) gene, complete cds
          Length = 12021

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 349  accaggcgctgcagcgtgtcgcgg 372
            |||||||||||||||||| |||||
Sbjct: 7568 accaggcgctgcagcgtggcgcgg 7545
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 291     cttctcgccgccctccaccg 310
               ||||||||||||||||||||
Sbjct: 7328710 cttctcgccgccctccaccg 7328729
to top
>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0067K15
          Length = 160162

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   cggcggccgcctccaccggcaccg 181
             ||||||||||||| ||||||||||
Sbjct: 78461 cggcggccgcctctaccggcaccg 78484
to top
>gb|AY892172.1| Synthetic construct Homo sapiens clone FLH014254.01L
           TNFRSF1A-associated via death domain (TRADD) mRNA,
           partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
to top
>gb|AY889716.1| Synthetic construct Homo sapiens clone FLH014258.01X
           TNFRSF1A-associated via death domain (TRADD) mRNA,
           complete cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
to top
>gb|AE005129.1| Halobacterium sp. NRC-1 section 160 of 170 of the complete genome
          Length = 18209

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 306  caccggctcctggtcgccgc 325
            ||||||||||||||||||||
Sbjct: 8762 caccggctcctggtcgccgc 8743
to top
>gb|AY112603.1| Zea mays CL43526_1 mRNA sequence
          Length = 252

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 134 agccggcaccaccgccgcccgacc 157
           |||||||||||||| |||||||||
Sbjct: 185 agccggcaccaccgtcgcccgacc 162
to top
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete
            sequence
          Length = 63897

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 145  ccgccgcccgacccggcggccgcc 168
            ||||||||| ||||||||||||||
Sbjct: 2493 ccgccgccccacccggcggccgcc 2516
to top
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete
             sequence
          Length = 104146

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 145   ccgccgcccgacccggcggccgcc 168
             ||||||||| ||||||||||||||
Sbjct: 84800 ccgccgccccacccggcggccgcc 84823
to top
>emb|AJ311616.1|HSA311616 Homo sapiens partial TRADD gene for TNFRSF1A-associated via death
           domain, exon 5
          Length = 579

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 291 accaggcgctgcagcgtggcgcgg 268
to top
>emb|AL845534.7| Mouse DNA sequence from clone RP23-223C17 on chromosome 2, complete
             sequence
          Length = 191379

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   ctgctccttcttcagcctca 493
             ||||||||||||||||||||
Sbjct: 75418 ctgctccttcttcagcctca 75399
to top
>gb|L41690.1|HUMTRADD Homo sapiens TNF receptor-1 associated protein (TRADD) mRNA, 3' end
           of cds
          Length = 1435

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 349 accaggcgctgcagcgtgtcgcgg 372
           |||||||||||||||||| |||||
Sbjct: 905 accaggcgctgcagcgtggcgcgg 882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,392,246
Number of Sequences: 3902068
Number of extensions: 3392246
Number of successful extensions: 116187
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114733
Number of HSP's gapped (non-prelim): 1451
length of query: 508
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 486
effective length of database: 17,147,199,772
effective search space: 8333539089192
effective search space used: 8333539089192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top