ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 2e-14
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
3gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 88 2e-14
4dbj|AK104324.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
5dbj|AK101031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6dbj|AK060026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7dbj|AK059929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
8gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 88 2e-14
9dbj|AB026558.1| Oryza sativa (japonica cultivar-group) OsPAA1 mR... 88 2e-14
10ref|XM_470540.1| Oryza sativa (japonica cultivar-group), predic... 80 5e-12
11emb|AJ293343.1|ZMA293343 Zea mays mRNA for maize 20S proteasome ... 50 0.004
12gb|AY104377.1| Zea mays PCO108605 mRNA sequence 46 0.070
13gb|AC102739.7| Mus musculus chromosome 5, clone RP24-309H3, comp... 44 0.28
14gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, compl... 44 0.28
15gb|AC182702.2| Populus trichocarpa clone Pop1-75J20, complete se... 42 1.1
16emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromo... 42 1.1
17gb|AC108485.2| Homo sapiens chromosome 3 clone RP11-809D17, comp... 42 1.1
18gb|AC107620.2| Homo sapiens chromosome 3 clone RP11-621M17, comp... 42 1.1
19gb|AC159617.2| Mus musculus BAC clone RP24-501A1 from chromosome... 42 1.1
20gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, comple... 42 1.1
21dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
22gb|BC079919.1| Xenopus laevis MGC78853 protein, mRNA (cDNA clone... 40 4.3
23gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containin... 40 4.3
24gb|AC150499.3| Bos taurus BAC CH240-105M18 (Children's Hospital... 40 4.3
25gb|AY054381.1| Hordeum vulgare clone INS2 Sukkula retrotransposo... 40 4.3
26gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome ... 40 4.3
27gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.3
28gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, comple... 40 4.3
29gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.3
30gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.3
31emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chro... 40 4.3
32emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, stra... 40 4.3
33emb|BX321911.6| Mouse DNA sequence from clone RP23-255M6 on chro... 40 4.3
34gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, comple... 40 4.3
35gb|AC103914.4| Homo sapiens BAC clone CTD-2037K2 from 2, complet... 40 4.3
36gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete s... 40 4.3
37gb|AC126049.3| Mus musculus BAC clone RP23-224I16 from 1, comple... 40 4.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                       
Query: 272     tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
               |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 4192401 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 4192456



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 189     acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
               |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 4192297 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 4192344
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                       
Query: 272     tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
               |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 4192510 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 4192565



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 189     acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
               |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 4192406 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 4192453
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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                     
Query: 272   tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
             |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 93038 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 93093



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 189   acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
             |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 92934 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 92981
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>dbj|AK104324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-G09, full
           insert sequence
          Length = 995

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 272 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 846 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 791



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 189 acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 950 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 903
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>dbj|AK101031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K05, full
           insert sequence
          Length = 1048

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 272 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 858 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 803



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 189 acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 962 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 915
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>dbj|AK060026.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C02, full
           insert sequence
          Length = 1043

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 272 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 846 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 791



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 189 acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 950 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 903
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>dbj|AK059929.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A07, full
           insert sequence
          Length = 1042

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 272 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 859 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 804



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 189 acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 963 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 916
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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Plus

                                                                     
Query: 272   tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
             |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 21016 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 21071



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 189   acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
             |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 20912 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 20959
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>dbj|AB026558.1| Oryza sativa (japonica cultivar-group) OsPAA1 mRNA for alpha 1
           subunit of 20S proteasome, complete cds
          Length = 1010

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 272 tagctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 824 tagctcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 769



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 189 acatgaaatgattcactgaatgtttcttggctggccatgaaacaaaat 236
           |||||||||| ||||||||||||||||||||||  ||||||| |||||
Sbjct: 928 acatgaaatggttcactgaatgtttcttggctgaacatgaaataaaat 881
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>ref|XM_470540.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 741

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                               
Query: 276 tcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           |||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 741 tcagtcgcgctcacttatggctgttaggtgctgatcgatctcctctgtcgtg 690
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>emb|AJ293343.1|ZMA293343 Zea mays mRNA for maize 20S proteasome alpha subunit (paa gene)
          Length = 1040

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 275 ctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgtcgtg 327
           ||||||| || || ||||| || || ||||||||||| |||||||||||||||
Sbjct: 823 ctcagtcacgttcactaattgccgtcaggtgctgatcgatctcctctgtcgtg 771
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>gb|AY104377.1| Zea mays PCO108605 mRNA sequence
          Length = 1142

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 273 agctcagtcgcgctcgctaatggctgttaggtgctgatcaatctcctctgt 323
           ||||||||| || || ||||| || || |||||||| ||||||||||||||
Sbjct: 834 agctcagtcccgttcactaattgccgtcaggtgctggtcaatctcctctgt 784
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>gb|AC102739.7| Mus musculus chromosome 5, clone RP24-309H3, complete sequence
          Length = 191542

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 51    catagagacaggagaagaaaataaaa 76
             ||||||||||| ||||||||||||||
Sbjct: 57648 catagagacagaagaagaaaataaaa 57623
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>gb|AC098969.2| Homo sapiens chromosome 3 clone RP11-24O17, complete sequence
          Length = 158560

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 195   aatgattcactgaatgtttctt 216
             ||||||||||||||||||||||
Sbjct: 23257 aatgattcactgaatgtttctt 23236
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>gb|AC182702.2| Populus trichocarpa clone Pop1-75J20, complete sequence
          Length = 102031

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 69   aaataaaacagcccaaacatg 89
            |||||||||||||||||||||
Sbjct: 7618 aaataaaacagcccaaacatg 7598
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>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete
             sequence
          Length = 131053

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    agaaaataaaacagcccaaac 86
             |||||||||||||||||||||
Sbjct: 94528 agaaaataaaacagcccaaac 94548
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>gb|AC108485.2| Homo sapiens chromosome 3 clone RP11-809D17, complete sequence
          Length = 166284

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    aaaataaaacagcccaaacat 88
             |||||||||||||||||||||
Sbjct: 27775 aaaataaaacagcccaaacat 27795
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>gb|AC107620.2| Homo sapiens chromosome 3 clone RP11-621M17, complete sequence
          Length = 200034

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     aaaataaaacagcccaaacat 88
              |||||||||||||||||||||
Sbjct: 162299 aaaataaaacagcccaaacat 162319
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>gb|AC159617.2| Mus musculus BAC clone RP24-501A1 from chromosome 12, complete sequence
          Length = 165665

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    caggagaagaaaataaaacag 79
             |||||||||||||||||||||
Sbjct: 31110 caggagaagaaaataaaacag 31130
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>gb|AC098818.3| Homo sapiens BAC clone RP11-109G23 from 4, complete sequence
          Length = 216451

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 224   catgaaacaaaataacagtttatgg 248
             |||||| ||||||||||||||||||
Sbjct: 59272 catgaagcaaaataacagtttatgg 59296
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>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0004O05
          Length = 140513

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 52     atagagacaggagaagaaaat 72
              |||||||||||||||||||||
Sbjct: 107951 atagagacaggagaagaaaat 107931
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>gb|BC079919.1| Xenopus laevis MGC78853 protein, mRNA (cDNA clone MGC:78853
            IMAGE:3403020), complete cds
          Length = 3476

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  tgattcactgaatgtttctt 216
            ||||||||||||||||||||
Sbjct: 1751 tgattcactgaatgtttctt 1732
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>gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containing the Irx4 gene,
             complete cds, complete sequence
          Length = 84437

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   tagcaaattcaaccacacaaagga 141
             |||||||||||| |||||||||||
Sbjct: 33862 tagcaaattcaaacacacaaagga 33885
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>gb|AC150499.3| Bos taurus  BAC CH240-105M18 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 205738

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gacaggagaagaaaataaaa 76
             ||||||||||||||||||||
Sbjct: 42438 gacaggagaagaaaataaaa 42419
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>gb|AY054381.1| Hordeum vulgare clone INS2 Sukkula retrotransposon, partial
           sequence
          Length = 3185

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 121 caaattcaaccacacaaaggatga 144
           |||||||||| |||||||||||||
Sbjct: 669 caaattcaacaacacaaaggatga 646
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>gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome 1, complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aggagaagaaaataaaacag 79
             ||||||||||||||||||||
Sbjct: 65482 aggagaagaaaataaaacag 65463
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    atgaaacaaaataacagttt 244
              ||||||||||||||||||||
Sbjct: 101716 atgaaacaaaataacagttt 101697
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>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence
          Length = 198453

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     agacaggagaagaaaataaa 75
              ||||||||||||||||||||
Sbjct: 153127 agacaggagaagaaaataaa 153146
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    atgaaacaaaataacagttt 244
              ||||||||||||||||||||
Sbjct: 103233 atgaaacaaaataacagttt 103214
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    atgaaacaaaataacagttt 244
              ||||||||||||||||||||
Sbjct: 135142 atgaaacaaaataacagttt 135161
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>emb|AL451138.5| Human DNA sequence from clone RP11-152H3 on chromosome 9, complete
              sequence
          Length = 117273

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     agacaggagaagaaaataaa 75
              ||||||||||||||||||||
Sbjct: 102826 agacaggagaagaaaataaa 102807
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>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
          Length = 344249

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 29    catcgaaagagtggcagcaccaca 52
             ||||||||||||||||||| ||||
Sbjct: 60103 catcgaaagagtggcagcatcaca 60126
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>emb|BX321911.6| Mouse DNA sequence from clone RP23-255M6 on chromosome 11 Contains a
             ribosomal protein L22 (Rpl22) pseudogene, complete
             sequence
          Length = 56399

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aatgattcactgaatgtttc 214
             ||||||||||||||||||||
Sbjct: 22547 aatgattcactgaatgtttc 22566
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>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    agacaggagaagaaaataaa 75
             ||||||||||||||||||||
Sbjct: 10658 agacaggagaagaaaataaa 10639
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>gb|AC103914.4| Homo sapiens BAC clone CTD-2037K2 from 2, complete sequence
          Length = 22870

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    acaggagaagaaaataaaac 77
             ||||||||||||||||||||
Sbjct: 20551 acaggagaagaaaataaaac 20570
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>gb|AC154868.3| Monodelphis domestica, clone XX-211C4, complete sequence
          Length = 129158

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   aatgattcactgaatgtttc 214
             ||||||||||||||||||||
Sbjct: 41089 aatgattcactgaatgtttc 41070
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>gb|AC126049.3| Mus musculus BAC clone RP23-224I16 from 1, complete sequence
          Length = 224972

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     agagacaggagaagaaaata 73
              ||||||||||||||||||||
Sbjct: 122692 agagacaggagaagaaaata 122711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,971,885
Number of Sequences: 3902068
Number of extensions: 3971885
Number of successful extensions: 113250
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113141
Number of HSP's gapped (non-prelim): 109
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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