>emb|AL451103.7| Human DNA sequence from clone RP11-172M3 on chromosome Xp21.1-21.2
             Contains a CpG island, complete sequence
          Length = 175384

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 9     gaattatcttaagaaaatatat 30
             ||||||||||||||||||||||
Sbjct: 30872 gaattatcttaagaaaatatat 30893

>emb|AL160151.16| Human DNA sequence from clone RP11-168G22 on chromosome 13 Contains a
             ribosomal protein L32 (RPL32) pseudogene, the 3' end of a
             novel gene and two novel genes, complete sequence
          Length = 154530

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 47    tataagtcctccctagaacaag 68
             ||||||||||||||||||||||
Sbjct: 21693 tataagtcctccctagaacaag 21714

>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 262   cttcttggccagaattcttgtgtaag 287
             ||||||||| ||||||||||||||||
Sbjct: 26541 cttcttggctagaattcttgtgtaag 26566

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 11       attatcttaagaaaatatattc 32
                ||||||||||||||||||||||
Sbjct: 32729403 attatcttaagaaaatatattc 32729424



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 12      ttatcttaagaaaatatatt 31
               ||||||||||||||||||||
Sbjct: 8315925 ttatcttaagaaaatatatt 8315944

>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0490D09
          Length = 154430

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 11    attatcttaagaaaatatattc 32
             ||||||||||||||||||||||
Sbjct: 92198 attatcttaagaaaatatattc 92219

>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete
             sequence
          Length = 198193

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    tacaatggctacaggaaggat 94
             |||||||||||||||||||||
Sbjct: 24281 tacaatggctacaggaaggat 24301

>gb|AC125058.4| Mus musculus BAC clone RP23-400N6 from chromosome 14, complete sequence
          Length = 195696

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     tacaatggctacaggaaggat 94
              |||||||||||||||||||||
Sbjct: 184811 tacaatggctacaggaaggat 184831

>emb|Y13187.2|HSDMDINT Homo sapiens partial DMD gene, intron 11, isolate 381
          Length = 29678

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 7   atgaattatcttaagaaaatatatt 31
           ||||||||||||||||| |||||||
Sbjct: 491 atgaattatcttaagaatatatatt 515

>emb|Y13186.2|HSDMDALU Homo sapiens partial DMD gene, mutated intron 11, isolate MA
          Length = 18047

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 7   atgaattatcttaagaaaatatatt 31
           ||||||||||||||||| |||||||
Sbjct: 491 atgaattatcttaagaatatatatt 515

>gb|AC004468.1|AC004468 Homo sapiens Xp21 PAC RPCI1-37A12 containing exons 10 to 16 of the
             Duchenne Muscular Dystrophy gene, complete sequence
          Length = 127757

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 7     atgaattatcttaagaaaatatatt 31
             ||||||||||||||||| |||||||
Sbjct: 35507 atgaattatcttaagaatatatatt 35531

>emb|CT476827.2| Pan troglodytes chromosome X BAC RP43-033L16, complete sequence
          Length = 165984

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     atgaattatcttaagaaaatatatt 31
             ||||||||||||||||| |||||||
Sbjct: 12906 atgaattatcttaagaatatatatt 12882

>gb|AY542985.1| Bigelowiella natans transcription factor BTF3 mRNA, complete cds
          Length = 837

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  atcttaagaaaatatattcg 33
           ||||||||||||||||||||
Sbjct: 411 atcttaagaaaatatattcg 430

>gb|AC104917.9| Mus musculus chromosome 1, clone RP23-329F7, complete sequence
          Length = 205999

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tattgcatgaattatcttaa 20
              ||||||||||||||||||||
Sbjct: 141404 tattgcatgaattatcttaa 141385

>gb|AC098885.3| Mus musculus BAC clone RP23-122L17 from 5, complete sequence
          Length = 211112

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 206    ttgatgtctgtcttaacatatcca 229
              |||||||||||||| |||||||||
Sbjct: 188662 ttgatgtctgtcttgacatatcca 188639

>gb|DQ127563.1| Emiliania huxleyi virus 163 clone new49.seq partial sequence
          Length = 4132

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   gatgcttctactgtgccgtt 111
            ||||||||||||||||||||
Sbjct: 3709 gatgcttctactgtgccgtt 3690

>emb|AL592310.6| Human DNA sequence from clone RP4-566D2 on chromosome 1 Contains a novel
              pseudogene and the 3' end of a novel gene (MGC42493),
              complete sequence
          Length = 111140

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    attcttgtgtaagcattgat 294
              ||||||||||||||||||||
Sbjct: 105935 attcttgtgtaagcattgat 105916

>emb|AL513226.11| Human DNA sequence from clone RP11-466M12 on chromosome 1, complete
             sequence
          Length = 28717

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     tattgcatgaattatcttaa 20
             ||||||||||||||||||||
Sbjct: 24452 tattgcatgaattatcttaa 24433

>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     tagaacaagaaaaatacaat 79
              ||||||||||||||||||||
Sbjct: 558236 tagaacaagaaaaatacaat 558255

>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttatcttaagaaaatatatt 31
              ||||||||||||||||||||
Sbjct: 109856 ttatcttaagaaaatatatt 109875

>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00
          Length = 1457619

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 8      tgaattatcttaagaaaatatatt 31
              |||||||| |||||||||||||||
Sbjct: 693482 tgaattatattaagaaaatatatt 693505

>dbj|AP003087.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-594014, complete
             sequences
          Length = 100403

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aagaaaatatattcggggtt 38
             ||||||||||||||||||||
Sbjct: 27949 aagaaaatatattcggggtt 27968

>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete
              sequences
          Length = 170371

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     aagaaaatatattcggggtt 38
              ||||||||||||||||||||
Sbjct: 161614 aagaaaatatattcggggtt 161633

>gb|AC100746.4| Mus musculus chromosome 5, clone RP24-399G21, complete sequence
          Length = 157682

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 206    ttgatgtctgtcttaacatatcca 229
              |||||||||||||| |||||||||
Sbjct: 121795 ttgatgtctgtcttgacatatcca 121818

>gb|AC149054.3| Mus musculus BAC clone RP23-443H21 from 18, complete sequence
          Length = 210613

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    atggctacaggaaggatgct 97
             ||||||||||||||||||||
Sbjct: 87669 atggctacaggaaggatgct 87650


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,994,100
Number of Sequences: 3902068
Number of extensions: 2994100
Number of successful extensions: 58461
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58376
Number of HSP's gapped (non-prelim): 85
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)