ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SECA_GUITH (O78441) Preprotein translocase secA subunit 32 0.80
2FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Pepti... 30 4.0
3ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2... 30 5.2
4LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Le... 29 6.8
5SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 29 6.8
6AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11 29 8.9
7MURI_FUSNN (Q8REE6) Glutamate racemase (EC 5.1.1.3) 29 8.9

>SECA_GUITH (O78441) Preprotein translocase secA subunit|
          Length = 877

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 27/65 (41%), Positives = 33/65 (50%)
 Frame = +3

Query: 18  NRDGPVLIRTTSDNKTKLLEKHSCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALH 197
           N   PVLI TTS  K++LL      Y +P   N L  KP+   NV+ EA+I    GR   
Sbjct: 424 NLGRPVLIGTTSVEKSELLSSLLKEYGVP--HNLLNAKPE---NVQREAEIVAQAGRLGA 478

Query: 198 VTHRT 212
           VT  T
Sbjct: 479 VTIAT 483



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>FKBP3_CANGA (Q6FKH7) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 437

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 513 EEEDXHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEELARK 382
           EE +   +++ E  + K   + H HHH HD +++ D   +   K
Sbjct: 240 EEIEASEEEESEEEEKKSKHKKHDHHHHHDHDHDHDHEHKSKNK 283



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 516 EEEEDXHRQDKDEGTKAKLFRRFHQHHHAHDSENE 412
           E E     + ++E  K+K  +  H HHH HD +++
Sbjct: 241 EIEASEEEESEEEEKKSKHKKHDHHHHHDHDHDHD 275



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>ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 20) (DHHC-20)
          Length = 380

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 217 CCVRCVTWSALPFPTFIFASYSTLHYHLGLCVSLFVRVG 101
           CC R V W  + F TF+   +S   Y + LCVS   R G
Sbjct: 9   CCQRVVGWVPVLFITFVVV-WSYYAYVVELCVSTISRTG 46



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>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Legumin B|
           acidic chain); Legumin B beta chain (Legumin B basic
           chain)] (Fragment)
          Length = 338

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 516 EEEEDXHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEE 394
           EEEE  H Q K+E  + +  R  H+ H   + E+E +E EE
Sbjct: 53  EEEEQSHSQRKEEEEEEQEQR--HRKHSKKEDEDEDEEEEE 91



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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 513 EEEDXHRQDKDEGTKAKLFRRFHQHHHAHDSENEVDEVEE 394
           EEE+    D DEG   +  R     H  H  E + D+ +E
Sbjct: 260 EEEEDEEDDDDEGDSTESDRHQAHRHRGHREEEDEDDDDE 299



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>AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11|
          Length = 230

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 474 TKAKLFRRFHQHHHAHDSENEVDEVEELARK 382
           TK     R+ QHHH   S +E++ +E LA +
Sbjct: 169 TKVAEVERYQQHHHQMVSGSEINAIEALASR 199



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>MURI_FUSNN (Q8REE6) Glutamate racemase (EC 5.1.1.3)|
          Length = 264

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 48  TSDNKTKLLEKH--SCPYNLPTLTNKLTHKPKW*CNVEYEAKIKVGNGRALHVTHRTQQ 218
           T DN+ +LL K+    P N  TL    TH P    ++E   KIKV +  A+ +  RT Q
Sbjct: 160 TFDNRKELLNKYLSEIPKNADTLVLGCTHYPLIREDIEKNIKIKVVD-PAVEIVERTIQ 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,335,391
Number of Sequences: 219361
Number of extensions: 1088083
Number of successful extensions: 3639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3545
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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