ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48c04 |
|---|---|
| Clone Library Name | barley_pub |
>ACH1_MANSE (P91766) Acetylcholine receptor protein, alpha-like subunit| precursor (MARA1) Length = 516 Score = 33.1 bits (74), Expect = 0.44 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = +1 Query: 253 LVKIRRLQALLHSHRWPHQPWYPWQRCY*ATRHW*QRMIHRPSAHSWQSLPVXXXXXXXX 432 L+ + ++ ++ W Q WY ++ + + M+H PS H W+ V Sbjct: 61 LIDVNLKNQIMTTNLWVEQSWYDYKLSWEPREYGGVEMLHVPSDHIWRPDIVLYNNADGN 120 Query: 433 XXXXXXXXGTL----AAEWQPPPL 492 TL EW+PP + Sbjct: 121 FEVTLATKATLNYTGRVEWRPPAI 144
>ITA2_BOVIN (P53710) Integrin alpha-2 precursor (Platelet membrane glycoprotein| Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b antigen) (Fragment) Length = 1170 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 401 CQSRSVG*VCCWLWLLSWKGPWLPNGSRRLWHG 499 C++ S + CWL L KG + N S R+W+G Sbjct: 1039 CRTASCSNIMCWLRDLQVKGEYFLNVSTRIWNG 1071
>O5AK3_HUMAN (Q8NH89) Olfactory receptor 5AK3| Length = 298 Score = 30.8 bits (68), Expect = 2.2 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Frame = -2 Query: 197 LLIRYWKLYMMVVI---SSTCIRKNGLDICVVHLTVPCI----RSYLYFLPVCKIPNRQH 39 L+I + +Y+MV I SST RK C HLT I SY+Y P + Sbjct: 212 LVIIFSYIYIMVTILKMSSTAGRKKSFSTCASHLTAVTIFYGTLSYMYLQP----QSNNS 267 Query: 38 TENMLKEQIF 9 ENM IF Sbjct: 268 QENMKVASIF 277
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 496 MPEAAAAIRQPRSLPRQEPQPAADSADAP 410 MP AA+ +P S P QE P A S+D P Sbjct: 934 MPNNMAALEKPLSHPMQETMPHAGSSDQP 962
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1067 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 496 MPEAAAAIRQPRSLPRQEPQPAADSADAP 410 MP AA+ +P S P QE P A S+D P Sbjct: 927 MPNNMAALEKPLSHPMQETMPHAGSSDQP 955
>ITA2_HUMAN (P17301) Integrin alpha-2 precursor (Platelet membrane glycoprotein| Ia) (GPIa) (Collagen receptor) (VLA-2 alpha chain) (CD49b antigen) Length = 1181 Score = 30.0 bits (66), Expect = 3.7 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +2 Query: 401 CQSRSVG*VCCWLWLLSWKGPWLPNGSRRLWHG 499 C++ S V CWL + KG + N + R+W+G Sbjct: 1050 CRTASCSNVTCWLKDVHMKGEYFVNVTTRIWNG 1082
>LNT_RHOBA (Q7UGJ8) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 571 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 348 TSRLVAALPWVPWLVRPTVRMEKGLEPPDFD 256 T LV +LPW+ +V P + +++G +P FD Sbjct: 389 TIPLVHSLPWIRDIVPPGLGLDRGTQPERFD 419
>Y1518_MYCTU (Q50590) Hypothetical protein Rv1518/MT1568| Length = 319 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = -1 Query: 378 WTVYHPLSPVTSRLVAALPWVP-WL 307 W + PLSP + R AAL W+P WL Sbjct: 256 WLIVDPLSPNSVRSAAALWWIPAWL 280
>WECA_SHIFL (P0AC80) Undecaprenyl-phosphate alpha-N-acetylglucosaminyl| 1-phosphate transferase (EC 2.7.8.-) (UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase) Length = 367 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 366 HPLSPVTSRLVAALPWVPWLVRPTVRMEKGLEP 268 HP+SPVT+ + A+P + + R+ KG+ P Sbjct: 240 HPISPVTALWIIAIPLMDMVAIMYRRLRKGMSP 272
>WECA_ECOLI (P0AC78) Undecaprenyl-phosphate alpha-N-acetylglucosaminyl| 1-phosphate transferase (EC 2.7.8.-) (UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase) Length = 367 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 366 HPLSPVTSRLVAALPWVPWLVRPTVRMEKGLEP 268 HP+SPVT+ + A+P + + R+ KG+ P Sbjct: 240 HPISPVTALWIIAIPLMDMVAIMYRRLRKGMSP 272
>WECA_ECOL6 (P0AC79) Undecaprenyl-phosphate alpha-N-acetylglucosaminyl| 1-phosphate transferase (EC 2.7.8.-) (UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase) Length = 367 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 366 HPLSPVTSRLVAALPWVPWLVRPTVRMEKGLEP 268 HP+SPVT+ + A+P + + R+ KG+ P Sbjct: 240 HPISPVTALWIIAIPLMDMVAIMYRRLRKGMSP 272
>WECA_ECO57 (Q8XAS7) Undecaprenyl-phosphate alpha-N-acetylglucosaminyl| 1-phosphate transferase (EC 2.7.8.-) (UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase) Length = 367 Score = 29.3 bits (64), Expect = 6.3 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -1 Query: 366 HPLSPVTSRLVAALPWVPWLVRPTVRMEKGLEP 268 HP+SPVT+ + A+P + + R+ KG+ P Sbjct: 240 HPISPVTALWIIAIPLMDMVAIMYRRLRKGMSP 272
>OR4D9_HUMAN (Q8NGE8) Olfactory receptor 4D9 (Olfactory receptor OR11-253)| Length = 314 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Frame = -2 Query: 209 IIYALLIRYWKLYMMVVISSTCIRKNGLDICVVHLT------VPCIRSYLYFLPVCKIP 51 + + LLI Y + MM+ + R+ + C H+T VPCI Y+Y P +P Sbjct: 210 VFFFLLISYTVILMMLRSHTGEGRRKAISTCTSHITVVTLHFVPCI--YVYARPFTALP 266
>ALA4_ARATH (Q9LNQ4) Putative phospholipid-transporting ATPase 4 (EC 3.6.3.1)| (Aminophospholipid flippase 4) Length = 1216 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 177 TVYDGCN*QHVYKKKWVRYLCGSLDGTMYTELLIFSTCM 61 TVY CN H++KKK ++Y + T Y + F C+ Sbjct: 42 TVY--CNQPHMHKKKPLKYRSNYVSTTRYNLITFFPKCL 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,249,397 Number of Sequences: 219361 Number of extensions: 1593273 Number of successful extensions: 4235 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4227 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
