ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48c03 |
|---|---|
| Clone Library Name | barley_pub |
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 88.6 bits (218), Expect = 7e-18 Identities = 46/87 (52%), Positives = 60/87 (68%), Gaps = 3/87 (3%) Frame = -2 Query: 470 GRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNI 297 GRT D++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG I Sbjct: 167 GRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGII 226 Query: 296 GDQWSDILGAPEG-ARTFKLPDPMYYI 219 GDQWSD+LG G +RTFKLP+P+YYI Sbjct: 227 GDQWSDLLGGHRGESRTFKLPNPLYYI 253
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 85.1 bits (209), Expect = 8e-17 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Frame = -2 Query: 470 GRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKG-SAVTYKSGERQKLQDAGYVIVGNIG 294 GR+E R++TV NL G W L+L+ G +A TYKS R + + G+ IVGN G Sbjct: 170 GRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSG 229 Query: 293 DQWSDILGAPEGARTFKLPDPMYYI 219 DQWSD+LG+ R+FKLP+PMYYI Sbjct: 230 DQWSDLLGSSMSYRSFKLPNPMYYI 254
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 84.7 bits (208), Expect = 1e-16 Identities = 45/86 (52%), Positives = 57/86 (66%), Gaps = 2/86 (2%) Frame = -2 Query: 470 GRTEDQRAITVTNLRRQGISGWMNLLLKQPGF-KGSAVTYKSGERQKLQDAGYVIVGNIG 294 GR D+ A+T NL++ G W L+LK P +A++YKS R+ L GY IVG IG Sbjct: 168 GRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIG 227 Query: 293 DQWSDILGAPEG-ARTFKLPDPMYYI 219 DQWSD+LG G +RTFKLP+PMYYI Sbjct: 228 DQWSDLLGDHRGESRTFKLPNPMYYI 253
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 80.9 bits (198), Expect = 2e-15 Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 3/83 (3%) Frame = -2 Query: 470 GRTEDQRAITVTNLRRQGISGWMNLLLKQPGFKGS--AVTYKSGERQKLQDAGYVIVGNI 297 GRT D++A+T NL++ G W L+LK P + AV+YK+ R+KL GY IVG I Sbjct: 164 GRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGII 223 Query: 296 GDQWSDILGAPEG-ARTFKLPDP 231 GDQWSD+LG G +RTFKLP+P Sbjct: 224 GDQWSDLLGGHRGESRTFKLPNP 246
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 78.2 bits (191), Expect = 1e-14 Identities = 38/76 (50%), Positives = 51/76 (67%) Frame = -2 Query: 446 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGA 267 IT+ NL+ G++ W +L+LK G K + V YKS R L GY IVGNIGDQW+D++ Sbjct: 194 ITIENLKAVGVTKWKHLILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVED 253 Query: 266 PEGARTFKLPDPMYYI 219 G R FKLP+P+YY+ Sbjct: 254 TPG-RVFKLPNPLYYV 268
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 73.9 bits (180), Expect = 2e-13 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -2 Query: 446 ITVTNLRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGA 267 +T+ NL G++ W +L+LK G V YKS R+ L GY IVGNIGDQW+D++ Sbjct: 189 VTLDNLEAAGVTYWKHLILKPNGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVED 248 Query: 266 PEGARTFKLPDPMYYI 219 G R FKLP+P+YY+ Sbjct: 249 TPG-RVFKLPNPLYYV 263
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 302 NIGDQWSDILGAPEGARTFKLPDPMY 225 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>PROL4_HUMAN (Q16378) Proline-rich protein 4 precursor (Lacrimal proline-rich| protein) (Nasopharyngeal carcinoma-associated proline-rich protein 4) Length = 134 Score = 30.4 bits (67), Expect = 2.4 Identities = 10/12 (83%), Positives = 10/12 (83%) Frame = -1 Query: 456 PEGHHRHQPPPP 421 P GHHRH PPPP Sbjct: 76 PGGHHRHPPPPP 87
>YGFT_ECOLI (Q46820) Hypothetical protein ygfT| Length = 639 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = +3 Query: 294 ADVTDDDIPGVLQLLPLAGLVGHRRALEPGLLQQEVHPPRDPLAAEV---GDGD 446 AD+ +D PGV+Q LP L H R L GL + E +P D V G GD Sbjct: 411 ADLPHEDAPGVIQALPF--LTAHTRQL-MGLPESEEYPLTDVEGKRVVVLGGGD 461
>FLGH_BRUSU (Q8FXC2) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASINTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUME (Q8YB19) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>FLGH_BRUAB (Q579T6) Flagellar L-ring protein precursor (Basal body L-ring| protein) Length = 238 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 186 SMPGRARGGLADV---VHGVGQLEGAGTLWRAEDVAPLVADVTDDDIP 320 S+ G A GG D H + +G GT+ R+ED+ +A + D +P Sbjct: 116 SITGAAAGGDMDASVNTHSDSKSKGKGTIERSEDIRLQIAAIVTDTLP 163
>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC| 1.-.-.-) Length = 393 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = -2 Query: 431 LRRQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAG-YVIVGNIGDQWSDILGAPEGA 255 + RQG+ + L PG +G+ V GE + AG V+V N W + + P Sbjct: 94 MARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVP-SV 152 Query: 254 RTFKLPDPMYY 222 +TF +P+ M + Sbjct: 153 QTFLIPEAMTF 163
>FABG6_BRANA (P27582) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) (Fragments) Length = 201 Score = 28.9 bits (63), Expect = 6.9 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 425 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 261 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 124 REGASRNINVNVVCPGFIASEMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 177
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -3 Query: 460 RTRGPSPSPTSAARGSLGG*TSC*SNPGSRALR*PTSPARGRS 332 +T+ +PSP SA R S S P + + P SPAR RS Sbjct: 725 KTKASTPSPRSARRVSSSRSASGSPEPAPKKHQGPPSPARSRS 767
>NLGN1_RAT (Q62765) Neuroligin-1 precursor (Neuroligin I)| Length = 843 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 456 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 364 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>NLGN1_MOUSE (Q99K10) Neuroligin-1 precursor| Length = 843 Score = 28.9 bits (63), Expect = 6.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 456 PEGHHRHQPPPPGDLWVDEPLAEATRVQGLC 364 P G HR QPP P W D + AT+ +C Sbjct: 89 PTGEHRFQPPEPPSPWSD--IRNATQFAPVC 117
>PRS23_HUMAN (O95084) Serine protease 23 precursor (EC 3.4.21.-) (Putative| secreted protein ZSIG13) Length = 383 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 386 QPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPEGARTFKLPDPMYY 222 QPG GS V + +RQ+ + +I G QW D+ G+P+ P+ Y Sbjct: 312 QPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKY 366
>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 345 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = +3 Query: 114 NWGLII*RNMHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLWRAEDVAPLV 293 NWG+ S++++RE++G +P A GGL + G + ++ Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDGAKAIRMGANIFGLAGQFLKA 304 Query: 294 ADVTDDDIPGVLQLL 338 AD ++ + +QL+ Sbjct: 305 ADTSESLLSEEVQLI 319
>FABG3_BRANA (Q949M3) 3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 3) Length = 315 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 425 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 261 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 238 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 291
>FABG4_BRANA (Q949M2) 3-oxoacyl-[acyl-carrier-protein] reductase 4 (EC| 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 4) (Fragment) Length = 254 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 425 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 261 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 177 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 230
>RL16_LISMO (Q927L4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISMF (Q71WF3) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISIN (Q7ANU4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>FABG2_BRANA (Q93X67) 3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 2) Length = 328 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 425 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 261 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 251 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 304
>FABG1_BRANA (Q93X62) 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplast| precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 1) (Beta-keto acyl-carrier protein reductase 1) Length = 320 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 425 RQGISGWMNLLLKQPGFKGSAVTYKSGERQKLQDAGYVIVGNIGDQWSDILGAPE 261 R+G S +N+ + PGF S +T K GE + + G + +G G Q D+ G E Sbjct: 243 REGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRYG-QPEDVAGLVE 296 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,296,666 Number of Sequences: 219361 Number of extensions: 1356465 Number of successful extensions: 4435 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4407 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
