ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48b07 |
|---|---|
| Clone Library Name | barley_pub |
>ATP7_ARATH (Q9SJ12) Probable ATP synthase 24 kDa subunit, mitochondrial| precursor (EC 3.6.3.14) Length = 240 Score = 81.6 bits (200), Expect = 1e-15 Identities = 38/55 (69%), Positives = 46/55 (83%) Frame = -3 Query: 515 DLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRKLDIRNFL 351 DLPK EE LE+ +AKA+L ELK + VEAME Q K+EEF+DEEMPDV+ LDIRNF+ Sbjct: 186 DLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)| (MAP1(X)) [Contains: MAP1 light chain LC1] Length = 2464 Score = 32.3 bits (72), Expect = 0.79 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = -3 Query: 506 KIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 372 ++++E++ +I K E ELKKEV + + ++E K EE +V+K Sbjct: 677 EVKKEIKKEIKKEERKELKKEVKKETPLKDAKKEVKKEEKKEVKK 721
>MINC_THETN (Q8RBC0) Probable septum site-determining protein minC| Length = 214 Score = 32.3 bits (72), Expect = 0.79 Identities = 12/55 (21%), Positives = 35/55 (63%), Gaps = 5/55 (9%) Frame = -3 Query: 503 IEEELEMQIAKAELTELKKEVVEAMEG-----QLKREEFKDEEMPDVRKLDIRNF 354 ++E++++++ K + + ++ ++ EG ++K +FKDEE+ D++ ++N+ Sbjct: 19 VDEDVDIEVLKERIVDRIEKSLKFFEGATLNVRVKNSKFKDEELEDLKDFILKNY 73
>BFR2_EMENI (Q5AW04) Protein bfr2| Length = 576 Score = 31.6 bits (70), Expect = 1.3 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Frame = +2 Query: 80 NYNVWLLNTTAAAGTYSATLDVHVASLRKKQNSQRQK--------PNSTVVFSVQFYYK 232 N LL T+ A T +A LD HVAS ++S+R K PN V+ +Y+ Sbjct: 388 NSKTKLLGTSGAQQTITAVLDAHVASETTDRSSKRLKSTQGSTSDPNEVKVYDDTIFYQ 446
>SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Protein smc-4)| Length = 1549 Score = 30.8 bits (68), Expect = 2.3 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Frame = -3 Query: 515 DLPKIEEELEMQIAKA---ELTELKKEVVEAMEGQLKREEFKDEEM 387 D+ K++++ E + KA E + KKE VE E Q+K+ + K EEM Sbjct: 960 DIEKMKKKCEELMEKAIDDEEVKSKKETVERFEKQIKKLQTKGEEM 1005
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = -3 Query: 509 PKIEE---ELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 372 PK EE E++ +I K E ELKKEV + + ++E K +E +V+K Sbjct: 672 PKKEEAKKEIKKEIKKEEKKELKKEVKKETPLKDAKKEVKKDEKKEVKK 720
>TIG_CAMJR (Q5HWX5) Trigger factor (TF)| Length = 444 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = -3 Query: 515 DLPK--IEEELEMQIAKAELTELKKEVVEAMEG----QLKREEFKDEEMPDVR 375 DLPK +E+E +MQ+ A T +KE+ E Q KR+ FK+E V+ Sbjct: 308 DLPKGIVEQETDMQMRAAFNTFSEKEIEELKASKEKYQEKRDSFKEEAQKSVK 360
>TIG_CAMJE (Q46108) Trigger factor (TF)| Length = 444 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = -3 Query: 515 DLPK--IEEELEMQIAKAELTELKKEVVEAMEG----QLKREEFKDEEMPDVR 375 DLPK +E+E +MQ+ A T +KE+ E Q KR+ FK+E V+ Sbjct: 308 DLPKGIVEQETDMQMRAAFNTFSEKEIEELKASKEKYQEKRDSFKEEAQKSVK 360
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 506 KIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEE 390 K+EEE E ++A+ E T +KK+ + +K E +EE Sbjct: 467 KVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEE 505
>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)| Length = 812 Score = 30.0 bits (66), Expect = 3.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 Query: 203 PWSWVSGVESFVSSLGWQREH 141 PW W+SGVE V+SL Q H Sbjct: 385 PWHWMSGVEQQVASLSGQCHH 405
>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19| precursor (Toxicity and JNK inducer) (TRADE) Length = 416 Score = 30.0 bits (66), Expect = 3.9 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = +1 Query: 100 KYNSSRRHIFSNARCSRCQPKEETKLSTPETQLHGCI--FGAVLLQRARTS----VGCGL 261 +YN S F R C + + ++G + ++ + AR+S +GCGL Sbjct: 212 QYNGSELSCFDQPRLRHCAHRACCQYHRDSAPMYGPVHLIPSLCCEEARSSARAVLGCGL 271 Query: 262 KHRLSLEKKNHRSIG 306 + +L+++N S+G Sbjct: 272 RSPTTLQERNPASVG 286
>BGAL_LACSK (Q48846) Beta-galactosidase large subunit (EC 3.2.1.23) (Lactase)| Length = 625 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 65 WNIPYNYNVWLLNTTAAAGTYSATLDVHVASLRKKQNSQRQKPNSTVVFSVQFYYKEQE 241 WN+P +Y+ W T A T T HV+ L ++ +V+ + YYK+Q+ Sbjct: 427 WNVPGSYDEWEAATLDRARTNFETFKNHVSILFWSLGNESYA--GSVLEKMNAYYKQQD 483
>PYGM_SHEEP (O18751) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +2 Query: 17 LKPWPKHHIITW*TRHWNIPYNYNVWLLNTTAAA 118 L+ WP H I T RH I Y N LN AAA Sbjct: 384 LERWPVHLIETLLPRHLQIIYEINQRFLNRVAAA 417
>PYGM_BOVIN (P79334) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +2 Query: 17 LKPWPKHHIITW*TRHWNIPYNYNVWLLNTTAAA 118 L+ WP H I T RH I Y N LN AAA Sbjct: 384 LERWPVHLIETLLPRHLQIIYEINQRFLNRVAAA 417
>GABR1_MOUSE (Q9WV18) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 960 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 400 KMRRCLTSGSWTLETSSRSLIDDDNPHGVSKCRSICDFSF 281 K+R+CL +GSWT D D P S+C IC S+ Sbjct: 76 KVRKCLANGSWT---------DMDTP---SRCVRICSKSY 103
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 400 KMRRCLTSGSWTLETSSRSLIDDDNPHGVSKCRSICDFSF 281 K+R+CL +GSWT D D P S+C IC S+ Sbjct: 77 KVRKCLANGSWT---------DMDTP---SRCVRICSKSY 104
>GABR1_RAT (Q9Z0U4) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 991 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 400 KMRRCLTSGSWTLETSSRSLIDDDNPHGVSKCRSICDFSF 281 K+R+CL +GSWT D D P S+C IC S+ Sbjct: 76 KVRKCLANGSWT---------DMDTP---SRCVRICSKSY 103
>TIG_PROMP (Q7UZK8) Trigger factor (TF)| Length = 473 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/50 (28%), Positives = 29/50 (58%) Frame = -3 Query: 509 PKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRKLDIR 360 P+ E+ ++ +A L+E +K V+ E K +E++DE +++DI+ Sbjct: 361 PQAEKNVQRNLALKALSEREKITVDNEEIDQKMKEYEDEISKSPKQIDIQ 410
>RETBP_HORSE (Q28369) Plasma retinol-binding protein precursor (PRBP) (RBP)| Length = 201 Score = 28.9 bits (63), Expect = 8.7 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +2 Query: 89 VWLLNTTAAAGTYSATLDVHVASLRKKQNSQRQKPNSTVVFSVQFYYKEQEHPLGV 256 VW L AA G+ A D V+S R K+N + + FS +Y ++ P G+ Sbjct: 4 VWALVVLAALGSAGAERDCRVSSFRVKENFDKAR------FSGTWYAMAKKDPEGL 53 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,100,079 Number of Sequences: 219361 Number of extensions: 1219688 Number of successful extensions: 4516 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4305 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4493 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
