No.
Definition
Score (bits)
E Value
1 gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome...
82
1e-12
2 gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome...
82
1e-12
3 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
82
1e-12
4 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
82
1e-12
5 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
78
2e-11
6 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
78
2e-11
7 emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb...
78
2e-11
8 emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb...
78
2e-11
9 ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predic...
54
3e-04
10 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
54
3e-04
11 dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D...
54
3e-04
12 dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D...
54
3e-04
13 dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clon...
54
3e-04
14 emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for ...
46
0.074
15 gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome...
44
0.29
16 gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.29
17 dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.29
18 emb|BX510320.6| Zebrafish DNA sequence from clone CH211-117C8, c...
42
1.1
19 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
42
1.1
20 dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D...
42
1.1
21 dbj|AB073155.1| Arabidopsis thaliana DNA, chromosome 4 centromer...
42
1.1
22 dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon...
42
1.1
23 gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom...
40
4.5
24 gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome...
40
4.5
25 emb|AL445258.4| Human DNA sequence from clone RP11-269F10 on chr...
40
4.5
26 emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chr...
40
4.5
27 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
4.5
28 dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge...
40
4.5
29 dbj|AK112773.1| Ciona intestinalis cDNA, clone:cieg057p17, full ...
40
4.5
30 dbj|AB047106.1| Bacillus thermoleovorans Bt-adh, Bt-aldh, ORF-X,...
40
4.5
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 81.8 bits (41), Expect = 1e-12
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 112 gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
|||||||| ||||||| ||| | ||||||||||||||| | |||||||| ||||| |||
Sbjct: 1894300 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 1894359
Query: 172 tggttggtccagtccccgaccacgccgcgccggaaga 208
||||| |||| || ||||||||||| ||||||||||
Sbjct: 1894360 tggtttctccaatctccgaccacgccacgccggaaga 1894396
Score = 71.9 bits (36), Expect = 1e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||||||||||||
Sbjct: 1910367 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 1910426
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaaga 208
||||| || |||| || || |||||||| ||||||||||
Sbjct: 1910427 aggtgattcctccaatctccaaccacgccacgccggaaga 1910466
Score = 58.0 bits (29), Expect = 2e-05
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||| ||||| ||
Sbjct: 1913782 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 1913841
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
||||| || |||| || || |||||||| |||||||||||
Sbjct: 1913842 aggtgattcctccaatcaccaaccacgccacgccggaagaa 1913882
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 153 cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
|||||||||||||| | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 17387855 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 17387798
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 313 tccactccggcatcctgctcc 333
|||||||||||||||||||||
Sbjct: 1910571 tccactccggcatcctgctcc 1910591
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 81.8 bits (41), Expect = 1e-12
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 112 gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
|||||||| ||||||| ||| | ||||||||||||||| | |||||||| ||||| |||
Sbjct: 1892021 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 1892080
Query: 172 tggttggtccagtccccgaccacgccgcgccggaaga 208
||||| |||| || ||||||||||| ||||||||||
Sbjct: 1892081 tggtttctccaatctccgaccacgccacgccggaaga 1892117
Score = 71.9 bits (36), Expect = 1e-09
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||||||||||||
Sbjct: 1908088 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 1908147
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaaga 208
||||| || |||| || || |||||||| ||||||||||
Sbjct: 1908148 aggtgattcctccaatctccaaccacgccacgccggaaga 1908187
Score = 58.0 bits (29), Expect = 2e-05
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||| ||||| ||
Sbjct: 1911503 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 1911562
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
||||| || |||| || || |||||||| |||||||||||
Sbjct: 1911563 aggtgattcctccaatcaccaaccacgccacgccggaagaa 1911603
Score = 44.1 bits (22), Expect = 0.29
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 153 cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
|||||||||||||| | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 17481565 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 17481508
Score = 42.1 bits (21), Expect = 1.1
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 313 tccactccggcatcctgctcc 333
|||||||||||||||||||||
Sbjct: 1908292 tccactccggcatcctgctcc 1908312
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 77.8 bits (39), Expect = 2e-11
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 115 cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
||||| ||||||| ||| | ||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 1830031 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 1830090
Query: 175 ttggtccagtccccgaccacgccgcgccggaagaa 209
|| |||| || ||||||||||| |||||||||||
Sbjct: 1830091 tttctccaatctccgaccacgccacgccggaagaa 1830125
Score = 71.9 bits (36), Expect = 1e-09
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 112 gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
|||||||| |||||| ||| | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 1837029 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 1837088
Query: 172 tggttggtccagtccccgaccacgccgcgccggaag 207
|| || |||| || || |||||||| |||||||||
Sbjct: 1837089 tgattcctccaatctccaaccacgccacgccggaag 1837124
Score = 65.9 bits (33), Expect = 8e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||||||||| ||
Sbjct: 1841383 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 1841442
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
||||| || || | || ||||||||||| |||||||||||
Sbjct: 1841443 aggtgattcctctaatcaccgaccacgccacgccggaagaa 1841483
Score = 46.1 bits (23), Expect = 0.074
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 287 tggcgcatgcctccgcgatctccctgtccactccg 321
||||||| |||||| |||||| |||||||||||||
Sbjct: 1841561 tggcgcaggcctccacgatcttcctgtccactccg 1841595
Score = 42.1 bits (21), Expect = 1.1
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 297 ctccgcgatctccctgtccactccggcatcctgctcc 333
|||| |||||| |||||||||| |||||||||||||
Sbjct: 1837214 ctccacgatctttctgtccactctggcatcctgctcc 1837250
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 77.8 bits (39), Expect = 2e-11
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 115 cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
||||| ||||||| ||| | ||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 1830009 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 1830068
Query: 175 ttggtccagtccccgaccacgccgcgccggaagaa 209
|| |||| || ||||||||||| |||||||||||
Sbjct: 1830069 tttctccaatctccgaccacgccacgccggaagaa 1830103
Score = 71.9 bits (36), Expect = 1e-09
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 112 gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
|||||||| |||||| ||| | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 1837007 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 1837066
Query: 172 tggttggtccagtccccgaccacgccgcgccggaag 207
|| || |||| || || |||||||| |||||||||
Sbjct: 1837067 tgattcctccaatctccaaccacgccacgccggaag 1837102
Score = 65.9 bits (33), Expect = 8e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||||||||| ||
Sbjct: 1841361 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 1841420
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
||||| || || | || ||||||||||| |||||||||||
Sbjct: 1841421 aggtgattcctctaatcaccgaccacgccacgccggaagaa 1841461
Score = 46.1 bits (23), Expect = 0.074
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 287 tggcgcatgcctccgcgatctccctgtccactccg 321
||||||| |||||| |||||| |||||||||||||
Sbjct: 1841539 tggcgcaggcctccacgatcttcctgtccactccg 1841573
Score = 42.1 bits (21), Expect = 1.1
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 297 ctccgcgatctccctgtccactccggcatcctgctcc 333
|||| |||||| |||||||||| |||||||||||||
Sbjct: 1837192 ctccacgatctttctgtccactctggcatcctgctcc 1837228
>emb|AL935154.2 |CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 128619
Score = 77.8 bits (39), Expect = 2e-11
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 115 cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
||||| ||||||| ||| | ||||||||||||||| | |||||||| ||||| ||||||
Sbjct: 24749 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 24808
Query: 175 ttggtccagtccccgaccacgccgcgccggaagaa 209
|| |||| || ||||||||||| |||||||||||
Sbjct: 24809 tttctccaatctccgaccacgccacgccggaagaa 24843
Score = 71.9 bits (36), Expect = 1e-09
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 112 gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
|||||||| |||||| ||| | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 31747 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 31806
Query: 172 tggttggtccagtccccgaccacgccgcgccggaag 207
|| || |||| || || |||||||| |||||||||
Sbjct: 31807 tgattcctccaatctccaaccacgccacgccggaag 31842
Score = 65.9 bits (33), Expect = 8e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 109 ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
||||||||||| |||||| || | ||||||||||||||| | |||||||||||| ||
Sbjct: 36101 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 36160
Query: 169 aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
||||| || || | || ||||||||||| |||||||||||
Sbjct: 36161 aggtgattcctctaatcaccgaccacgccacgccggaagaa 36201
Score = 46.1 bits (23), Expect = 0.074
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 287 tggcgcatgcctccgcgatctccctgtccactccg 321
||||||| |||||| |||||| |||||||||||||
Sbjct: 36279 tggcgcaggcctccacgatcttcctgtccactccg 36313
Score = 42.1 bits (21), Expect = 1.1
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 297 ctccgcgatctccctgtccactccggcatcctgctcc 333
|||| |||||| |||||||||| |||||||||||||
Sbjct: 31932 ctccacgatctttctgtccactctggcatcctgctcc 31968
>dbj|AB047106.1 | Bacillus thermoleovorans Bt-adh, Bt-aldh, ORF-X, p21, ORF-Y, genes,
partial and complete cds
Length = 6119
Score = 40.1 bits (20), Expect = 4.5
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 272 cggccatgctcttcgtggcgcatg 295
||||| ||||||||||||||||||
Sbjct: 5111 cggccctgctcttcgtggcgcatg 5088
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,270,575
Number of Sequences: 3902068
Number of extensions: 2270575
Number of successful extensions: 43884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43583
Number of HSP's gapped (non-prelim): 290
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)