ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart48a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
2gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 82 1e-12
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
7emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb... 78 2e-11
8emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb... 78 2e-11
9ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predic... 54 3e-04
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
11dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
12dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
13dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
14emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for ... 46 0.074
15gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
16gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
17dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
18emb|BX510320.6| Zebrafish DNA sequence from clone CH211-117C8, c... 42 1.1
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21dbj|AB073155.1| Arabidopsis thaliana DNA, chromosome 4 centromer... 42 1.1
22dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
23gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom... 40 4.5
24gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome... 40 4.5
25emb|AL445258.4| Human DNA sequence from clone RP11-269F10 on chr... 40 4.5
26emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chr... 40 4.5
27gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.5
28dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 4.5
29dbj|AK112773.1| Ciona intestinalis cDNA, clone:cieg057p17, full ... 40 4.5
30dbj|AB047106.1| Bacillus thermoleovorans Bt-adh, Bt-aldh, ORF-X,... 40 4.5

>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAa0068G15, complete sequence
          Length = 130161

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 112   gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
             |||||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| |||
Sbjct: 25956 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 26015

                                                  
Query: 172   tggttggtccagtccccgaccacgccgcgccggaaga 208
             |||||  |||| || ||||||||||| ||||||||||
Sbjct: 26016 tggtttctccaatctccgaccacgccacgccggaaga 26052



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 109   ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
             ||||||||||| ||||||  ||  | ||||||||||||||| | ||||||||||||||| 
Sbjct: 42023 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 42082

                                                     
Query: 169   aggtggttggtccagtccccgaccacgccgcgccggaaga 208
             ||||| ||  |||| || || |||||||| ||||||||||
Sbjct: 42083 aggtgattcctccaatctccaaccacgccacgccggaaga 42122



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                         
Query: 109   ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
             ||||||||||| ||||||  ||  | ||||||||||||||| | |||||| ||||| || 
Sbjct: 45438 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 45497

                                                      
Query: 169   aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
             ||||| ||  |||| || || |||||||| |||||||||||
Sbjct: 45498 aggtgattcctccaatcaccaaccacgccacgccggaagaa 45538



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 313   tccactccggcatcctgctcc 333
             |||||||||||||||||||||
Sbjct: 42227 tccactccggcatcctgctcc 42247



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>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15,
              complete sequence
          Length = 146175

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                          
Query: 112    gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
              |||||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| |||
Sbjct: 112130 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 112189

                                                   
Query: 172    tggttggtccagtccccgaccacgccgcgccggaaga 208
              |||||  |||| || ||||||||||| ||||||||||
Sbjct: 112190 tggtttctccaatctccgaccacgccacgccggaaga 112226



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                          
Query: 109    ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
              ||||||||||| ||||||  ||  | ||||||||||||||| | ||||||||||||||| 
Sbjct: 128197 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 128256

                                                      
Query: 169    aggtggttggtccagtccccgaccacgccgcgccggaaga 208
              ||||| ||  |||| || || |||||||| ||||||||||
Sbjct: 128257 aggtgattcctccaatctccaaccacgccacgccggaaga 128296



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                          
Query: 109    ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
              ||||||||||| ||||||  ||  | ||||||||||||||| | |||||| ||||| || 
Sbjct: 131612 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 131671

                                                       
Query: 169    aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
              ||||| ||  |||| || || |||||||| |||||||||||
Sbjct: 131672 aggtgattcctccaatcaccaaccacgccacgccggaagaa 131712



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 313    tccactccggcatcctgctcc 333
              |||||||||||||||||||||
Sbjct: 128401 tccactccggcatcctgctcc 128421



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                           
Query: 112     gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
               |||||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| |||
Sbjct: 1894300 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 1894359

                                                    
Query: 172     tggttggtccagtccccgaccacgccgcgccggaaga 208
               |||||  |||| || ||||||||||| ||||||||||
Sbjct: 1894360 tggtttctccaatctccgaccacgccacgccggaaga 1894396



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | ||||||||||||||| 
Sbjct: 1910367 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 1910426

                                                       
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaaga 208
               ||||| ||  |||| || || |||||||| ||||||||||
Sbjct: 1910427 aggtgattcctccaatctccaaccacgccacgccggaaga 1910466



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | |||||| ||||| || 
Sbjct: 1913782 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 1913841

                                                        
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
               ||||| ||  |||| || || |||||||| |||||||||||
Sbjct: 1913842 aggtgattcctccaatcaccaaccacgccacgccggaagaa 1913882



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 153      cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
                ||||||||||||||  | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 17387855 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 17387798



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 313     tccactccggcatcctgctcc 333
               |||||||||||||||||||||
Sbjct: 1910571 tccactccggcatcctgctcc 1910591



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                           
Query: 112     gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
               |||||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| |||
Sbjct: 1892021 gatcctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcagg 1892080

                                                    
Query: 172     tggttggtccagtccccgaccacgccgcgccggaaga 208
               |||||  |||| || ||||||||||| ||||||||||
Sbjct: 1892081 tggtttctccaatctccgaccacgccacgccggaaga 1892117



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | ||||||||||||||| 
Sbjct: 1908088 ccggatcctttaaacttgatctctgtaatctcatcaatcctcctcgccatctccggcgtc 1908147

                                                       
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaaga 208
               ||||| ||  |||| || || |||||||| ||||||||||
Sbjct: 1908148 aggtgattcctccaatctccaaccacgccacgccggaaga 1908187



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | |||||| ||||| || 
Sbjct: 1911503 ccggatcctttaaacttgatctctgtaatctcatcaatcctccgcgccatttccggtgtc 1911562

                                                        
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
               ||||| ||  |||| || || |||||||| |||||||||||
Sbjct: 1911563 aggtgattcctccaatcaccaaccacgccacgccggaagaa 1911603



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 153      cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
                ||||||||||||||  | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 17481565 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 17481508



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 313     tccactccggcatcctgctcc 333
               |||||||||||||||||||||
Sbjct: 1908292 tccactccggcatcctgctcc 1908312



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 115     cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
               ||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| ||||||
Sbjct: 1830031 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 1830090

                                                  
Query: 175     ttggtccagtccccgaccacgccgcgccggaagaa 209
               ||  |||| || ||||||||||| |||||||||||
Sbjct: 1830091 tttctccaatctccgaccacgccacgccggaagaa 1830125



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                           
Query: 112     gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
               |||||||| |||||| |||  | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 1837029 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 1837088

                                                   
Query: 172     tggttggtccagtccccgaccacgccgcgccggaag 207
               || ||  |||| || || |||||||| |||||||||
Sbjct: 1837089 tgattcctccaatctccaaccacgccacgccggaag 1837124



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | |||||||||||| || 
Sbjct: 1841383 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 1841442

                                                        
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
               ||||| ||  || | || ||||||||||| |||||||||||
Sbjct: 1841443 aggtgattcctctaatcaccgaccacgccacgccggaagaa 1841483



 Score = 46.1 bits (23), Expect = 0.074
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 287     tggcgcatgcctccgcgatctccctgtccactccg 321
               ||||||| |||||| |||||| |||||||||||||
Sbjct: 1841561 tggcgcaggcctccacgatcttcctgtccactccg 1841595



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 297     ctccgcgatctccctgtccactccggcatcctgctcc 333
               |||| ||||||  |||||||||| |||||||||||||
Sbjct: 1837214 ctccacgatctttctgtccactctggcatcctgctcc 1837250



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                           
Query: 115     cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
               ||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| ||||||
Sbjct: 1830009 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 1830068

                                                  
Query: 175     ttggtccagtccccgaccacgccgcgccggaagaa 209
               ||  |||| || ||||||||||| |||||||||||
Sbjct: 1830069 tttctccaatctccgaccacgccacgccggaagaa 1830103



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                           
Query: 112     gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
               |||||||| |||||| |||  | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 1837007 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 1837066

                                                   
Query: 172     tggttggtccagtccccgaccacgccgcgccggaag 207
               || ||  |||| || || |||||||| |||||||||
Sbjct: 1837067 tgattcctccaatctccaaccacgccacgccggaag 1837102



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                           
Query: 109     ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
               ||||||||||| ||||||  ||  | ||||||||||||||| | |||||||||||| || 
Sbjct: 1841361 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 1841420

                                                        
Query: 169     aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
               ||||| ||  || | || ||||||||||| |||||||||||
Sbjct: 1841421 aggtgattcctctaatcaccgaccacgccacgccggaagaa 1841461



 Score = 46.1 bits (23), Expect = 0.074
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 287     tggcgcatgcctccgcgatctccctgtccactccg 321
               ||||||| |||||| |||||| |||||||||||||
Sbjct: 1841539 tggcgcaggcctccacgatcttcctgtccactccg 1841573



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 297     ctccgcgatctccctgtccactccggcatcctgctcc 333
               |||| ||||||  |||||||||| |||||||||||||
Sbjct: 1837192 ctccacgatctttctgtccactctggcatcctgctcc 1837228



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>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128619

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 115   cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
             ||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| ||||||
Sbjct: 24749 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 24808

                                                
Query: 175   ttggtccagtccccgaccacgccgcgccggaagaa 209
             ||  |||| || ||||||||||| |||||||||||
Sbjct: 24809 tttctccaatctccgaccacgccacgccggaagaa 24843



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                         
Query: 112   gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
             |||||||| |||||| |||  | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 31747 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 31806

                                                 
Query: 172   tggttggtccagtccccgaccacgccgcgccggaag 207
             || ||  |||| || || |||||||| |||||||||
Sbjct: 31807 tgattcctccaatctccaaccacgccacgccggaag 31842



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 84/101 (83%)
 Strand = Plus / Plus

                                                                         
Query: 109   ccggatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtg 168
             ||||||||||| ||||||  ||  | ||||||||||||||| | |||||||||||| || 
Sbjct: 36101 ccggatcctttaaacttgatctccgtaatctcatcaatcctcctcgccatctccggtgtc 36160

                                                      
Query: 169   aggtggttggtccagtccccgaccacgccgcgccggaagaa 209
             ||||| ||  || | || ||||||||||| |||||||||||
Sbjct: 36161 aggtgattcctctaatcaccgaccacgccacgccggaagaa 36201



 Score = 46.1 bits (23), Expect = 0.074
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 287   tggcgcatgcctccgcgatctccctgtccactccg 321
             ||||||| |||||| |||||| |||||||||||||
Sbjct: 36279 tggcgcaggcctccacgatcttcctgtccactccg 36313



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 297   ctccgcgatctccctgtccactccggcatcctgctcc 333
             |||| ||||||  |||||||||| |||||||||||||
Sbjct: 31932 ctccacgatctttctgtccactctggcatcctgctcc 31968



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>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132026

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 115   cctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtgg 174
             ||||| ||||||| ||| | ||||||||||||||| |  |||||||| ||||| ||||||
Sbjct: 10451 cctttaaacttgctctttgtaatctcatcaatcctccttgccatctctggcgtcaggtgg 10392

                                                
Query: 175   ttggtccagtccccgaccacgccgcgccggaagaa 209
             ||  |||| || ||||||||||| |||||||||||
Sbjct: 10391 tttctccaatctccgaccacgccacgccggaagaa 10357



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 112  gatcctttgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgagg 171
            |||||||| |||||| |||  | ||||||||||||||| | ||||||||||||||| |||
Sbjct: 3453 gatcctttaaacttgacctctgtaatctcatcaatcctcctcgccatctccggcgtcagg 3394

                                                
Query: 172  tggttggtccagtccccgaccacgccgcgccggaag 207
            || ||  |||| || || |||||||| |||||||||
Sbjct: 3393 tgattcctccaatctccaaccacgccacgccggaag 3358



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 297  ctccgcgatctccctgtccactccggcatcctgctcc 333
            |||| ||||||  |||||||||| |||||||||||||
Sbjct: 3268 ctccacgatctttctgtccactctggcatcctgctcc 3232



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>ref|NM_183698.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
            ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 1000 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 941

                                           
Query: 179  tccagtccccgaccacgccgcgccggaagaa 209
             |||| ||||||| ||||| |||||||||||
Sbjct: 940  gccagcccccgacgacgcctcgccggaagaa 910



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                            
Query: 119      tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
                ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 11686461 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 11686520

                                               
Query: 179      tccagtccccgaccacgccgcgccggaagaa 209
                 |||| ||||||| ||||| |||||||||||
Sbjct: 11686521 gccagcccccgacgacgcctcgccggaagaa 11686551



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>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0551A11
          Length = 132384

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                          
Query: 119    tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
              ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 125585 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 125644

                                             
Query: 179    tccagtccccgaccacgccgcgccggaagaa 209
               |||| ||||||| ||||| |||||||||||
Sbjct: 125645 gccagcccccgacgacgcctcgccggaagaa 125675



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>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1011A07
          Length = 150590

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Plus

                                                                         
Query: 119   tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
             ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 25629 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 25688

                                            
Query: 179   tccagtccccgaccacgccgcgccggaagaa 209
              |||| ||||||| ||||| |||||||||||
Sbjct: 25689 gccagcccccgacgacgcctcgccggaagaa 25719



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>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full
            insert sequence
          Length = 1407

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
            ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 1072 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 1013

                                           
Query: 179  tccagtccccgaccacgccgcgccggaagaa 209
             |||| ||||||| ||||| |||||||||||
Sbjct: 1012 gccagcccccgacgacgcctcgccggaagaa 982



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>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid
            sulfotransferase (ss1 gene)
          Length = 1096

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 74/91 (81%)
 Strand = Plus / Minus

                                                                        
Query: 119  tgaacttgcccttgggaatctcatcaatccttcccgccatctccggcgtgaggtggttgg 178
            ||||||||| || || |||||| || ||||||   |||||||||||||  |||| ||| |
Sbjct: 1013 tgaacttgctctcggtaatctcgtcgatccttgtggccatctccggcgacaggtagttcg 954

                                           
Query: 179  tccagtccccgaccacgccgcgccggaagaa 209
             |||  ||||||| ||||| |||||||||||
Sbjct: 953  gccaacccccgacgacgcctcgccggaagaa 923



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>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21,
              complete sequence
          Length = 146539

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                        
Query: 153    cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
              ||||||||||||||  | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 116637 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 116580



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>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10,
              complete sequence
          Length = 157609

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                        
Query: 153    cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
              ||||||||||||||  | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 142630 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 142573



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>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full
            insert sequence
          Length = 1222

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 153  cgccatctccggcgtgaggtggttggtccagtccccgaccacgccgcgccggaagaag 210
            ||||||||||||||  | ||||||| ||||||| ||| |||| || | ||||||||||
Sbjct: 1081 cgccatctccggcgacatgtggttgctccagtcgccggccacccctctccggaagaag 1024



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>emb|BX510320.6| Zebrafish DNA sequence from clone CH211-117C8, complete sequence
          Length = 170783

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     gattgcaaacatcaaacgcgg 55
              |||||||||||||||||||||
Sbjct: 123382 gattgcaaacatcaaacgcgg 123402



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                            
Query: 153     cgccatctccggcgtgaggtggttggtccagtccccgaccacgcc 197
               ||||||||||||||| | ||||||   |||||| |||||||||||
Sbjct: 7945862 cgccatctccggcgtcatgtggttcacccagtcaccgaccacgcc 7945818



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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 153   cgccatctccggcgtgaggtggttggtccagtccccgaccacgcc 197
             ||||||||||||||| | ||||||   |||||| |||||||||||
Sbjct: 53380 cgccatctccggcgtcatgtggttcacccagtcaccgaccacgcc 53336



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>dbj|AB073155.1| Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F19O5
          Length = 116597

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 61     gaatgctagatcttggggatt 81
              |||||||||||||||||||||
Sbjct: 105761 gaatgctagatcttggggatt 105741



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>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full
            insert sequence
          Length = 1260

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 153  cgccatctccggcgtgaggtggttggtccagtccccgaccacgcc 197
            ||||||||||||||| | ||||||   |||||| |||||||||||
Sbjct: 1063 cgccatctccggcgtcatgtggttcacccagtcaccgaccacgcc 1019



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>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    gaacttgcccttgggaatct 139
              ||||||||||||||||||||
Sbjct: 158829 gaacttgcccttgggaatct 158848



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>gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome 18, complete
            sequence
          Length = 222376

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gaacttgcccttgggaatct 139
            ||||||||||||||||||||
Sbjct: 6103 gaacttgcccttgggaatct 6122



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>emb|AL445258.4| Human DNA sequence from clone RP11-269F10 on chromosome Xq27.1-27.3
              Contains STSs and GSSs, complete sequence
          Length = 175483

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     agattgttttgtgcagtatg 105
              ||||||||||||||||||||
Sbjct: 113285 agattgttttgtgcagtatg 113304



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>emb|AL355853.22| Human DNA sequence from clone RP11-36B21 on chromosome 13, complete
             sequence
          Length = 146641

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    agattgttttgtgcagtatg 105
             ||||||||||||||||||||
Sbjct: 75708 agattgttttgtgcagtatg 75689



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     ccccgaccacgccgcgccgg 204
               ||||||||||||||||||||
Sbjct: 4778083 ccccgaccacgccgcgccgg 4778102



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 272     cggccatgctcttcgtggcgcatg 295
               ||||| ||||||||||||||||||
Sbjct: 2794905 cggccctgctcttcgtggcgcatg 2794928



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>dbj|AK112773.1| Ciona intestinalis cDNA, clone:cieg057p17, full insert sequence
          Length = 3659

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  tttgaacttgcccttgggaa 136
            ||||||||||||||||||||
Sbjct: 2061 tttgaacttgcccttgggaa 2042



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>dbj|AB047106.1| Bacillus thermoleovorans Bt-adh, Bt-aldh, ORF-X, p21, ORF-Y, genes,
            partial and complete cds
          Length = 6119

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  cggccatgctcttcgtggcgcatg 295
            ||||| ||||||||||||||||||
Sbjct: 5111 cggccctgctcttcgtggcgcatg 5088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,270,575
Number of Sequences: 3902068
Number of extensions: 2270575
Number of successful extensions: 43884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43583
Number of HSP's gapped (non-prelim): 290
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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