>VL1_HPV5B (P26537) Major capsid protein L1|
          Length = 525

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 190 YDDDDDISTNYNVHSFRICRILQTPCRG------LPCRMQQQQRGKIPPIRV 327
           +  DD ++T+++    ++  +  TPC G      +PC    QQ G  PPI +
Sbjct: 148 FSKDDRLNTSFDPKQIQMFIVGCTPCIGEHWDKAVPCAKNDQQTGLCPPIEL 199

>VL1_HPV05 (P06917) Major capsid protein L1|
          Length = 516

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +1

Query: 145 FIHINYLQSSNEAHIYDDDDDISTNYNVHSFRICRILQTPCRG------LPCRMQQQQRG 306
           F  +   ++SN    +  DD   T+++    ++  +  TPC G      +PC    QQ G
Sbjct: 124 FNKVKDTENSNAYITFSKDDRQDTSFDPKQIQMFIVGCTPCIGEHWDKAVPCAENDQQTG 183

Query: 307 KIPPIRV 327
             PPI +
Sbjct: 184 LCPPIEL 190

>DNAJ2_MYCPA (Q73T77) Chaperone protein dnaJ 2|
          Length = 392

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 474 LRTDPQLADGRRVRLPGSGKRDIR 403
           +R  P + DG+R+RLPG G+  +R
Sbjct: 244 VRIPPGVEDGQRIRLPGQGEAGLR 267

>ASPA_AERSA (P31339) Microbial serine proteinase precursor (EC 3.4.21.-)|
          Length = 621

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 393 FIRVCGLEKLYMISSPFHGDLKHPDWR 313
           ++R  GL  + M+S  F+G+  H +WR
Sbjct: 541 YVRTKGLRDMRMLSHKFYGEPAHGEWR 567


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,562,071
Number of Sequences: 219361
Number of extensions: 1299289
Number of successful extensions: 3293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3292
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)