ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart48a02 |
|---|---|
| Clone Library Name | barley_pub |
>YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I| Length = 507 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/45 (46%), Positives = 27/45 (60%) Frame = -3 Query: 220 VHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 V+ T S IA LVSMGFD A QAL N D+++A++ LL Sbjct: 463 VNPPTDPGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 507
>MUD1_SCHPO (Q10256) UBA-domain protein mud1 (UBA-domain-containing protein 1)| (DNA-damage-inducible protein DDI1 homolog) Length = 332 Score = 38.5 bits (88), Expect = 0.011 Identities = 21/45 (46%), Positives = 27/45 (60%) Frame = -3 Query: 220 VHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 V+ T S IA LVSMGFD A QAL N D+++A++ LL Sbjct: 288 VNPPTDPGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 332
>RAD23_ORYSA (Q40742) Putative DNA repair protein RAD23 (OsRAD23)| Length = 392 Score = 37.0 bits (84), Expect = 0.031 Identities = 22/59 (37%), Positives = 29/59 (49%) Frame = -3 Query: 262 DENIPDHQARQMQGVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 +EN+ D M TP+ E+ I L +MGFDRA + N D LA+N LL Sbjct: 323 EENLLDQFPEAMPQTIAVTPEENEA-ILRLEAMGFDRALVLDVFFACNKDEQLAANYLL 380
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 36.6 bits (83), Expect = 0.041 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = -3 Query: 262 DENIPDHQARQMQGVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 +EN+ + M T TP+ E+ I L MGFDRA ++ N + LA+N LL Sbjct: 312 EENVMEQLEAAMPQAVTVTPEEREA-IERLEGMGFDRAMVLEVFFACNKNEELAANYLL 369
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 36.6 bits (83), Expect = 0.041 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 211 ATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLA 101 A P E + T+VSMGF R A++AL TNN + A Sbjct: 719 AADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERA 755
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 36.6 bits (83), Expect = 0.041 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 211 ATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLA 101 A P E + T+VSMGF R A++AL TNN + A Sbjct: 719 AADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERA 755
>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)| (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) Length = 863 Score = 35.8 bits (81), Expect = 0.069 Identities = 17/33 (51%), Positives = 21/33 (63%) Frame = -3 Query: 199 PTESSIATLVSMGFDRASAIQALALTNNDVNLA 101 P E +A + SMGF R AIQAL TNN++ A Sbjct: 728 PPEEIVAIITSMGFQRNQAIQALRATNNNLERA 760
>RD23B_ARATH (Q84L32) Putative DNA repair protein RAD23-2 (RAD23-like protein 2)| (AtRAD23-2) Length = 368 Score = 35.4 bits (80), Expect = 0.090 Identities = 23/59 (38%), Positives = 32/59 (54%) Frame = -3 Query: 262 DENIPDHQARQMQGVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 D +I D ++M TP+ ES I L +MGFDRA I+A + + LA+N LL Sbjct: 303 DVDIFDQPDQEMPHSVNVTPEEQES-IERLEAMGFDRAIVIEAFLSCDRNEELAANYLL 360
>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 596 Score = 35.0 bits (79), Expect = 0.12 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Frame = -3 Query: 394 GLLYRLNIFGIRRLKVPEYATSLFSRLSWPFSNNSYQRLPIATTDENIPDHQARQMQGV- 218 GL+ L FG R VP ++ S P S+ + N +QM + Sbjct: 480 GLVPSLGSFGTPRTSVPLAGSNSGSSAEAPTSSPGVPATSPPSAGSNAQQQLMQQMIQLL 539 Query: 217 ----HTATPDPT---ESSIATLVSMGF-DRASAIQALALTNNDVNLASNILLGAQ 77 ++ P P + + L SMGF +R + +QAL T D+N A LLG+Q Sbjct: 540 SGSGNSQVPMPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594
>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 601 Score = 35.0 bits (79), Expect = 0.12 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 12/118 (10%) Frame = -3 Query: 394 GLLYRLNIFGIRRLKVPEYATSLFSRLSWPFSNNSYQRLPIATTDENIPDHQARQMQGV- 218 GL+ L FGI R P ++ S P S+ + P ++ Q + MQ + Sbjct: 485 GLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPA---TPATSSPTGASSAQQQLMQQMI 541 Query: 217 ---------HTATPDPT-ESSIATLVSMGF-DRASAIQALALTNNDVNLASNILLGAQ 77 TP+ + + L SMGF +R + +QAL T D+N A LLG+Q Sbjct: 542 QLLAGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599
>Y3846_ARATH (Q8LB17) Protein At3g58460| Length = 403 Score = 34.7 bits (78), Expect = 0.15 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = -3 Query: 196 TESSIATLVSMGFDRASAIQALALTNNDVNLASNILLGAQS 74 +E I LV+MGFDR ALA ++D+ +A IL+ Q+ Sbjct: 363 SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQQA 403
>RD23A_ARATH (Q84L33) Putative DNA repair protein RAD23-1 (RAD23-like protein 1)| (AtRAD23-1) Length = 371 Score = 32.3 bits (72), Expect = 0.77 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -3 Query: 247 DHQARQMQGVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 D ++M TP E+ I L +MGFDRA I+A + + LA+N LL Sbjct: 311 DQPEQEMPHAINVTPAEQEA-IQRLEAMGFDRALVIEAFLACDRNEELAANYLL 363
>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) (hPLIC-1) Length = 589 Score = 32.0 bits (71), Expect = 1.0 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Frame = -3 Query: 277 PIATTDENIPDHQA------RQMQGVHTATPDPT---ESSIATLVSMGF-DRASAIQALA 128 P A T E P HQ + + GV+ +P + + L +MGF +R + +QAL Sbjct: 513 PTAGTTE--PGHQQFIQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALI 570 Query: 127 LTNNDVNLASNILLGAQ 77 T D+N A LLG+Q Sbjct: 571 ATGGDINAAIERLLGSQ 587
>RUVA_BARQU (Q6FYP5) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 208 TPDPTESSIATLVSMGFDRASAIQALALTNN 116 T PT +++ LV +GF+R A +ALAL N Sbjct: 151 THQPTNDALSALVKLGFERDQAARALALAMN 181
>UBQL2_MOUSE (Q9QZM0) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 638 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Frame = -3 Query: 274 IATTDENIPDHQARQMQ------GVHTATPDPT---ESSIATLVSMGF-DRASAIQALAL 125 I+ T E+ P+ Q Q G P+P + + L +MGF +R + +QAL Sbjct: 561 ISPTSESGPNQQFIQQMVQALTGGSPPQPPNPEVRFQQQLEQLNAMGFLNREANLQALIA 620 Query: 124 TNNDVNLASNILLGAQ 77 T D+N A LLG+Q Sbjct: 621 TGGDINAAIERLLGSQ 636
>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW| domain-binding protein 5A) (Fragment) Length = 311 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 291 ELLEKGHDNRENSEVAYSGTFSLRIPNIFRRYKSPASIPDSP 416 ++L DN E+S V T SL P + +PA PDSP Sbjct: 82 QVLHNEEDNSESSAVEQPSTSSLAAPTVEAAASAPALDPDSP 123
>UBC1_MOUSE (P61087) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -3 Query: 223 GVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 G ++P+ T+ I L +MGFDR + I AL+ + DV A+ +LL Sbjct: 153 GAPVSSPEYTKK-IENLCAMGFDRNAVIVALSSKSWDVETATELLL 197
>UBC1_HUMAN (P61086) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -3 Query: 223 GVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 G ++P+ T+ I L +MGFDR + I AL+ + DV A+ +LL Sbjct: 153 GAPVSSPEYTKK-IENLCAMGFDRNAVIVALSSKSWDVETATELLL 197
>UBC1_BOVIN (P61085) Ubiquitin-conjugating enzyme E2-25 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (E2(25K)) (Huntingtin-interacting protein 2) (HIP-2) Length = 199 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = -3 Query: 223 GVHTATPDPTESSIATLVSMGFDRASAIQALALTNNDVNLASNILL 86 G ++P+ T+ I L +MGFDR + I AL+ + DV A+ +LL Sbjct: 153 GAPVSSPEYTKK-IENLCAMGFDRNAVIVALSSKSWDVETATELLL 197
>NPRE_BACAM (P06832) Bacillolysin precursor (EC 3.4.24.28) (Neutral protease)| Length = 521 Score = 31.2 bits (69), Expect = 1.7 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 259 ENIPDHQARQMQGVHTATPDPTESSIATLVSMGFDRASAIQALALT 122 +N+P+ A GVHT + P +++ T+ +G ++A I ALT Sbjct: 435 KNLPNTDAGDYGGVHTNSGIPNKAAYNTITKIGVNKAEQIYYRALT 480
>RUVA_BARHE (Q6G5R0) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 208 TPDPTESSIATLVSMGFDRASAIQALALTNN 116 T PT +++ L+ +GF+R A +ALAL N Sbjct: 151 TNQPTNDALSALIKLGFERDQAARALALAVN 181
>TXD11_MOUSE (Q8K2W3) Thioredoxin domain-containing protein 11| Length = 948 Score = 30.4 bits (67), Expect = 2.9 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = +3 Query: 315 NRENSEVAYSGTFSLRIPNIFR---RYKSPASIPDSPGITERLPD 440 NR++ V Y G + +PN+ R + AS P PGI+ D Sbjct: 740 NRKDLSVKYPGDLPITLPNLLRFILHHSDAASAPQDPGISPPTQD 784
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 30.0 bits (66), Expect = 3.8 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Frame = -3 Query: 250 PDHQA------RQMQGVHTATPDPT---ESSIATLVSMGF-DRASAIQALALTNNDVNLA 101 P HQ + + GV+ P + + L +MGF +R + +QAL T D+N A Sbjct: 513 PGHQQFIQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAA 572 Query: 100 SNILLGAQ 77 LLG+Q Sbjct: 573 IERLLGSQ 580
>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 30.0 bits (66), Expect = 3.8 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Frame = -3 Query: 250 PDHQA------RQMQGVHTATPDPT---ESSIATLVSMGF-DRASAIQALALTNNDVNLA 101 P HQ + + GV+ P + + L +MGF +R + +QAL T D+N A Sbjct: 513 PGHQQFIQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAA 572 Query: 100 SNILLGAQ 77 LLG+Q Sbjct: 573 IERLLGSQ 580
>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 624 Score = 30.0 bits (66), Expect = 3.8 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Frame = -3 Query: 307 PFSNNSYQRLPIATTDENIPDHQARQ--MQGVHTAT----PDPT---ESSIATLVSMGF- 158 P +++ R + T E+ P+ Q Q +Q + A P+P + + L +MGF Sbjct: 536 PTVSSAAPRETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFL 595 Query: 157 DRASAIQALALTNNDVNLASNILLGAQ 77 +R + +QAL T D+N A LLG+Q Sbjct: 596 NREANLQALIATGGDINAAIERLLGSQ 622
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = -3 Query: 175 LVSMGFDRASAIQALALTNNDVNLASN 95 L+SMGF R A+ AL TN DVN S+ Sbjct: 797 LLSMGFPREKAVIALEATNYDVNEVSD 823
>PAFA2_BOVIN (P79106) Platelet-activating factor acetylhydrolase 2, cytoplasmic| (EC 3.1.1.47) (Serine dependent phospholipase A2) Length = 392 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -2 Query: 473 HIFGRAPASFLIWKTFCYTWTVWYTCWAFVPSEYIWYPQAKGP 345 H FG A A + K + V W F P E+ +YP A+GP Sbjct: 235 HSFGGATAILALAKEMQFRCAVALDAWMF-PLEHDFYPTARGP 276
>CHST1_HUMAN (O43916) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1) (GST-1) Length = 411 Score = 29.3 bits (64), Expect = 6.5 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%) Frame = +1 Query: 211 LCARPAFDEPG-------DQECFHQ--LLQLAISDKSC*RRAMTTAKTVKLHTLGPL 354 LC+RP D PG + +C + LL L ++ ++C R+ KTV++ + L Sbjct: 160 LCSRPVCDPPGPADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDL 216
>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF glutamate| transport modulator GTRAP48) Length = 1527 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = +3 Query: 324 NSEVAYSGTFSLRIP----NIFRRYKSPASIPDSPGITERLPDEK 446 + E AY G+ S R+ ++ K P +P+ PG +R+ D++ Sbjct: 1107 SQEPAYQGSTSSRVEINDSEVYHTEKEPKKLPEGPGPEQRVQDKQ 1151
>KHS1_YEAST (P39690) Killer toxin KHS precursor (Killer of heat-sensitive)| Length = 708 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 330 HCFRGCHGPSLTTLIRDCQLQQLMKTFLITRLVKCRAC 217 +C + C PSL + C LQQ + ++ L C AC Sbjct: 625 NCKKACESPSLVS----CNLQQTAELLMVYYLYICEAC 658
>CHST1_RAT (Q5RJQ0) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1) (GST-1) Length = 411 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 9/57 (15%) Frame = +1 Query: 211 LCARPAFDEPG-------DQECFHQ--LLQLAISDKSC*RRAMTTAKTVKLHTLGPL 354 LC+RP D PG + +C + LL L ++ ++C R+ KTV++ + L Sbjct: 160 LCSRPVCDPPGASDLILEEGDCVRKCGLLNLTLAAEACRERSHVAIKTVRVPEVNDL 216
>CHST1_MOUSE (Q9EQC0) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1) (GST-1) Length = 411 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = +1 Query: 211 LCARPAFDEPGDQECFHQ---------LLQLAISDKSC*RRAMTTAKTVKLHTLGPL 354 LC+RP D PG + + LL L ++ ++C R+ KTV++ + L Sbjct: 160 LCSRPVCDPPGSSDLILEEGDCVRMCGLLNLTLAAEACRERSHVAIKTVRVPEVNDL 216
>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)| [Contains: Capsid protein VP24 (EC 3.4.21.97) (Assemblin) (Protease); Capsid protein VP22A; UL26.5 protein; C-terminal peptide] Length = 635 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 271 ATTDENIPDHQARQMQGVHTATPDPTESSIATLV-SMGFDRASAIQALA 128 A ++ P H A Q GV + P P E+ IA LV ++ DR + Q A Sbjct: 368 AGLSQHYPPHVAHQYPGVLFSGPSPLEAQIAALVGAIAADRQAGGQPAA 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,543,146 Number of Sequences: 219361 Number of extensions: 1540151 Number of successful extensions: 4472 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4471 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
